Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05641 and BL03988

See Amino acid alignment / Visit BSNT_05641 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05641___ywlE.1.5803.seq
#    -bsequence dna-align/BL03988___ywlE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05641___ywlE-BL03988___ywlE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05641___ywlE-BL03988___ywlE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05641___ywlE
# 2: BL03988___ywlE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 510
# Identity:     319/510 (62.5%)
# Similarity:   319/510 (62.5%)
# Gaps:         111/510 (21.8%)
# Score: 982.5
# 
#
#=======================================

BSNT_05641___      1 ATGG---ATATTATTTTTGTCTGTACTGGAAATACGTGCCGCAGCCCAAT     47
                      |.|   ||||||  ||||||||||||||||||||||||||||||||.||
BL03988___ywl      1 -TTGAACATATTA--TTTGTCTGTACTGGAAATACGTGCCGCAGCCCGAT     47

BSNT_05641___     48 GGCTGAGGCGCTTTTTAAATCAAT-----TGCAGAAATGGAAGGGCTGAA     92
                     |||.||.|||||.||||||||  |     |||.||||   ||...|||.|
BL03988___ywl     48 GGCCGAAGCGCTCTTTAAATC--TGCGGCTGCCGAAA---AAAATCTGGA     92

BSNT_05641___     93 TGTCAATGTCCG----CTCGGCAGGCGTGTTTGCTTCGCCTAATGGGAAA    138
                     ||||    ||||    .||.||.||..||||||||   |||     ||||
BL03988___ywl     93 TGTC----TCCGTCAAATCTGCCGGGTTGTTTGCT---CCT-----GAAA    130

BSNT_05641___    139 GCG---ACGCCTC-----ATGCAGTCGAAGCGCTGTTTGAAAAACACATT    180
                     .||   |.||.||     ||||.|||||||||||.|||||||||.||||.
BL03988___ywl    131 ACGGAAAAGCTTCTTTATATGCTGTCGAAGCGCTTTTTGAAAAAAACATC    180

BSNT_05641___    181 GCCCTTAATCATGTGTCTTCTC--CATTAACTGA--AGAACTGATGGAAT    226
                     ||.||.||||||...|||||.|  |.||  |.||  ||||  |.||||||
BL03988___ywl    181 GCTCTGAATCATACATCTTCACAGCTTT--CCGAGGAGAA--GGTGGAAT    226

BSNT_05641___    227 CGGCTGATTTGGTTCTGGCTATGACCCATCAGCACAAACAGAT--CATTG    274
                     .|||||||.|.||||||.|.|||||..|.||||||||.|||.|  ||.|.
BL03988___ywl    227 GGGCTGATCTTGTTCTGACGATGACAGAGCAGCACAAGCAGCTGGCAGTA    276

BSNT_05641___    275 C-------------CAGCCAATTTGGACGTTATCGTGATAAAGTGTTTAC    311
                     |             .||||||               |||||..|.|.|||
BL03988___ywl    277 CATGAATTTTCAAAGAGCCAA---------------GATAAGATCTATAC    311

BSNT_05641___    312 GTTAAAAGAATATGTTACAGGCAGCCATGGTGATG---------TCATCG    352
                     |.|.|||||.|||||||         ||||.||||         |.||.|
BL03988___ywl    312 GCTGAAAGAGTATGTTA---------ATGGAGATGGCGGGGACATTATTG    352

BSNT_05641___    353 ATCCGTTCGGCGG----CTCAATTGACATCTATAAACAAACGCGAGATGA    398
                     |.|||||||||||    ||||    .|..||||.||..||||.|||||||
BL03988___ywl    353 ACCCGTTCGGCGGTTCTCTCA----GCGACTATCAAAGAACGAGAGATGA    398

BSNT_05641___    399 GCTTGAAGAGCTTCTTCGGCAGCTGGCAAAACAGCT---GAAAAAAGACC    445
                     |||.||..||||.||..|..|..||||..||..|||   |||.||  |.|
BL03988___ywl    399 GCTGGAGCAGCTGCTGAGAAAATTGGCGGAAATGCTTGCGAAGAA--ATC    446

BSNT_05641___    446 GCAG--ATAA    453
                     .|||  |||.
BL03988___ywl    447 TCAGGAATAG    456


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