Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05641 and BL03988
See
Amino acid alignment /
Visit
BSNT_05641 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05641___ywlE.1.5803.seq
# -bsequence dna-align/BL03988___ywlE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05641___ywlE-BL03988___ywlE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05641___ywlE-BL03988___ywlE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05641___ywlE
# 2: BL03988___ywlE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 510
# Identity: 319/510 (62.5%)
# Similarity: 319/510 (62.5%)
# Gaps: 111/510 (21.8%)
# Score: 982.5
#
#
#=======================================
BSNT_05641___ 1 ATGG---ATATTATTTTTGTCTGTACTGGAAATACGTGCCGCAGCCCAAT 47
|.| |||||| ||||||||||||||||||||||||||||||||.||
BL03988___ywl 1 -TTGAACATATTA--TTTGTCTGTACTGGAAATACGTGCCGCAGCCCGAT 47
BSNT_05641___ 48 GGCTGAGGCGCTTTTTAAATCAAT-----TGCAGAAATGGAAGGGCTGAA 92
|||.||.|||||.|||||||| | |||.|||| ||...|||.|
BL03988___ywl 48 GGCCGAAGCGCTCTTTAAATC--TGCGGCTGCCGAAA---AAAATCTGGA 92
BSNT_05641___ 93 TGTCAATGTCCG----CTCGGCAGGCGTGTTTGCTTCGCCTAATGGGAAA 138
|||| |||| .||.||.||..|||||||| ||| ||||
BL03988___ywl 93 TGTC----TCCGTCAAATCTGCCGGGTTGTTTGCT---CCT-----GAAA 130
BSNT_05641___ 139 GCG---ACGCCTC-----ATGCAGTCGAAGCGCTGTTTGAAAAACACATT 180
.|| |.||.|| ||||.|||||||||||.|||||||||.||||.
BL03988___ywl 131 ACGGAAAAGCTTCTTTATATGCTGTCGAAGCGCTTTTTGAAAAAAACATC 180
BSNT_05641___ 181 GCCCTTAATCATGTGTCTTCTC--CATTAACTGA--AGAACTGATGGAAT 226
||.||.||||||...|||||.| |.|| |.|| |||| |.||||||
BL03988___ywl 181 GCTCTGAATCATACATCTTCACAGCTTT--CCGAGGAGAA--GGTGGAAT 226
BSNT_05641___ 227 CGGCTGATTTGGTTCTGGCTATGACCCATCAGCACAAACAGAT--CATTG 274
.|||||||.|.||||||.|.|||||..|.||||||||.|||.| ||.|.
BL03988___ywl 227 GGGCTGATCTTGTTCTGACGATGACAGAGCAGCACAAGCAGCTGGCAGTA 276
BSNT_05641___ 275 C-------------CAGCCAATTTGGACGTTATCGTGATAAAGTGTTTAC 311
| .|||||| |||||..|.|.|||
BL03988___ywl 277 CATGAATTTTCAAAGAGCCAA---------------GATAAGATCTATAC 311
BSNT_05641___ 312 GTTAAAAGAATATGTTACAGGCAGCCATGGTGATG---------TCATCG 352
|.|.|||||.||||||| ||||.|||| |.||.|
BL03988___ywl 312 GCTGAAAGAGTATGTTA---------ATGGAGATGGCGGGGACATTATTG 352
BSNT_05641___ 353 ATCCGTTCGGCGG----CTCAATTGACATCTATAAACAAACGCGAGATGA 398
|.||||||||||| |||| .|..||||.||..||||.|||||||
BL03988___ywl 353 ACCCGTTCGGCGGTTCTCTCA----GCGACTATCAAAGAACGAGAGATGA 398
BSNT_05641___ 399 GCTTGAAGAGCTTCTTCGGCAGCTGGCAAAACAGCT---GAAAAAAGACC 445
|||.||..||||.||..|..|..||||..||..||| |||.|| |.|
BL03988___ywl 399 GCTGGAGCAGCTGCTGAGAAAATTGGCGGAAATGCTTGCGAAGAA--ATC 446
BSNT_05641___ 446 GCAG--ATAA 453
.||| |||.
BL03988___ywl 447 TCAGGAATAG 456
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.