Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05643 and BL03987

See Amino acid alignment / Visit BSNT_05643 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05643___ywlD.1.5803.seq
#    -bsequence dna-align/BL03987___ywlD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05643___ywlD-BL03987___ywlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05643___ywlD-BL03987___ywlD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05643___ywlD
# 2: BL03987___ywlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 591
# Identity:     399/591 (67.5%)
# Similarity:   399/591 (67.5%)
# Gaps:          63/591 (10.7%)
# Score: 1250.0
# 
#
#=======================================

BSNT_05643___      1 ----ATGTCGGATTTGTTTATAGGCGAA---CTGA---TTACATTAAGCA     40
                         |||| .|||.||||.|||||||||   ||||   ||.|      .|
BL03987___ywl      1 ATGAATGT-TGATGTGTTAATAGGCGAAATCCTGACGCTTTC------GA     43

BSNT_05643___     41 TCATGGCGTTTGCTTTAGGGATGGATGCTTTTTCTGTAGGCCTTGGAATG     90
                     |.|||||.|||||..|.||.||||||||.|||||.||.||.|||||||||
BL03987___ywl     44 TGATGGCTTTTGCACTCGGCATGGATGCCTTTTCAGTCGGTCTTGGAATG     93

BSNT_05643___     91 GGCATGGTCAAACTTAGAAAGAAGCAGATATTCTATATTGGTTTCATCAT    140
                     ||.||||.|||.||.|.||.|||.|||.|.||..|.||.||..||||.||
BL03987___ywl     94 GGAATGGCCAAGCTGAAAAGGAACCAGGTTTTTCAAATCGGCGTCATTAT    143

BSNT_05643___    141 CGGCCTCTTTCACGTCATCATGCCTCTCGCAGGGATGGCGGCCGGTAACA    190
                     .||..|.||.||.|||||||||||.||.|..||.|||...||.||  |||
BL03987___ywl    144 TGGATTGTTCCATGTCATCATGCCGCTTGGCGGAATGATTGCGGG--ACA    191

BSNT_05643___    191 --TGCTGTCAGG-GCTCCTCGGCGTGTTAGCGGTTTATATCGGTGGGGCG    237
                       |.||.||.|| || .||.||.|.|.|.||||..|||||.||.||.||.
BL03987___ywl    192 GTTTCTTTCGGGTGC-GCTTGGTGCGCTGGCGGGATATATTGGGGGAGCT    240

BSNT_05643___    238 CTGCTTTTTGTTCTTGGGGTTCAAATGCTTATGGCCTCTTTTA--AACAG    285
                     ||..|.||.||.||.||..||||.|||.||.|.||.|||||||  ||.||
BL03987___ywl    241 CTTTTATTGGTGCTGGGCATTCAGATGATTGTCGCATCTTTTAATAAAAG    290

BSNT_05643___    286 TC----AGAAGAACGATTCATGTCACCGGCAGGGC--CGGGCTTATTGCT    329
                      |    ||.|||     ||||.||.|| |||.|||  | |||||.||..|
BL03987___ywl    291 -CGGGGAGCAGA-----TCATCTCTCC-GCACGGCTTC-GGCTTGTTCGT    332

BSNT_05643___    330 GTTTGCCATCGGCGTCAGCCTTGACAGCTTTTCCGTCGGCTTGAGCTTGG    379
                     .||||||.|||||||||||||||||||||||||.|||||..|.|||.|.|
BL03987___ywl    333 TTTTGCCGTCGGCGTCAGCCTTGACAGCTTTTCAGTCGGTCTCAGCCTCG    382

BSNT_05643___    380 GGATATACGGCTCGCATCCGTTCCTCACAATTACC-------CTGTTCGG    422
                     |..|.|||||..||.|.|||.|       ||||.|       ||||||||
BL03987___ywl    383 GCCTCTACGGAACGAAACCGAT-------ATTAACGATCTTTCTGTTCGG    425

BSNT_05643___    423 GCTGTTTAGCATGATGTTGACATGGCTGGGCCTGCTGGTCGGAAAACAAG    472
                     ..||||.||||||.||||.||.|||..||||||.|||.|.||||||.|.|
BL03987___ywl    426 TTTGTTCAGCATGGTGTTAACTTGGGCGGGCCTTCTGCTTGGAAAAAAGG    475

BSNT_05643___    473 TGCAGTCATGGCTTGGCACATACAGCGAAGCGCTCGGGGG---CATCATA    519
                     |.||..|.|||||.|||.|.|||||||||||||||||.||   ||||.|.
BL03987___ywl    476 TTCAAACGTGGCTCGGCGCCTACAGCGAAGCGCTCGGAGGAGCCATCTTG    525

BSNT_05643___    520 TTAATCGTGTTTGGACTAAAGCTGCTTT--TGCCAATTTAA    558
                     .|.|.|   ||.||.||.|||||  |||  ||||.||||||
BL03987___ywl    526 CTGAGC---TTCGGTCTGAAGCT--TTTGCTGCCCATTTAA    561


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.