Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05646 and BL03985

See Amino acid alignment / Visit BSNT_05646 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05646___ywlB.1.5803.seq
#    -bsequence dna-align/BL03985___ywlB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05646___ywlB-BL03985___ywlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05646___ywlB-BL03985___ywlB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05646___ywlB
# 2: BL03985___ywlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 485
# Identity:     312/485 (64.3%)
# Similarity:   312/485 (64.3%)
# Gaps:          82/485 (16.9%)
# Score: 882.0
# 
#
#=======================================

BSNT_05646___      1 ATGTTTTATCAACTGCGGGTGGCAAGGGAA---AAAGAC-GGAGATGTGC     46
                     |||||.||.|||.||.||.|.||   ||||   |||||| .|| |||.|.
BL03985___ywl      1 ATGTTCTACCAATTGAGGTTAGC---GGAAACGAAAGACATGA-ATGCGA     46

BSNT_05646___     47 TCGAGGCATTTTTAAAACAGGCAAAAACCAGCTATGAAGG--CGTGA--A     92
                     ||||.||||||||||||.||||....||.|||.|| ||||  |.|||  |
BL03985___ywl     47 TCGAAGCATTTTTAAAAAAGGCGGGGACAAGCCAT-AAGGGTCTTGAGGA     95

BSNT_05646___     93 A--GAAG-GCTTCACTCAATTTCTTATGCTGGAGGACAGT---GAGAAAA    136
                     |  |||| ||      ||.|||.|.|||.||||.|||..|   ||..|||
BL03985___ywl     96 AGCGAAGAGC------CAGTTTATCATGATGGAAGACCCTCCCGATGAAA    139

BSNT_05646___    137 ACATTGCCGGATGCCTCGGTA---------TTGAAAAAATAAGCTGTGAC    177
                     .|.|.|||   ||||||||.|         |||||||.|.||        
BL03985___ywl    140 TCGTCGCC---TGCCTCGGAATGGAGGAATTTGAAAACAAAA--------    178

BSNT_05646___    178 CAGGGGCTGCTGCGATCACTTGTCATATCGGACAAGCTTCA-CCAAGGCC    226
                      |.||.||||||||.||.||||||.|.||.||||||| ||| ||||||||
BL03985___ywl    179 -AAGGACTGCTGCGCTCGCTTGTCGTGTCTGACAAGC-TCAGCCAAGGCC    226

BSNT_05646___    227 ATATCGTCACGCTT-TTTCAAAGCATGGAGGTGCTGTGCGAAAAGCATCA    275
                     |.|||||..| ||| ||||||||||||.||||..||||||||||||  .|
BL03985___ywl    227 ACATCGTTTC-CTTGTTTCAAAGCATGCAGGTATTGTGCGAAAAGC--GA    273

BSNT_05646___    276 G--ATCAAAACCGTGTACCTAGTAGCAAATCAGCATTCCTCTGCGGACTT    323
                     |  |||.|||||.|.||..|||||||.|||.|||...|.||...||| ||
BL03985___ywl    274 GGAATCCAAACCCTTTATTTAGTAGCCAATAAGCGAACATCGATGGA-TT    322

BSNT_05646___    324 TC--TGACG-GCCATGGGTTTTGAAAGAGCTGAGAGTGTACCGGAGGAGC    370
                     ||  |||.| ||  |.||||||.||..|||||.|....|.||.||.||||
BL03985___ywl    323 TCCTTGAAGTGC--TCGGTTTTAAACAAGCTGCGGCAATTCCTGATGAGC    370

BSNT_05646___    371 TGTTTTCTTCTGATCACTTCTGT----GATTCGCGGCAAAC--AGAAGGA    414
                     ||..|...||.||.||    |||    ||.||.|.|  |||  |.|.|||
BL03985___ywl    371 TGGATGAATCCGAGCA----TGTTTCAGACTCACTG--AACGTAAACGGA    414

BSNT_05646___    415 GCCGTTTTGATGAAAAAAGCGTCTGGATAA-----    444
                     ||.|||||.|||.|.|||.||||     ||     
BL03985___ywl    415 GCGGTTTTAATGGAGAAAACGTC-----AAATTAG    444


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