Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05647 and BL03984
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05647___spoIIR.1.5803.seq
# -bsequence dna-align/BL03984___spoIIR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05647___spoIIR-BL03984___spoIIR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05647___spoIIR-BL03984___spoIIR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05647___spoIIR
# 2: BL03984___spoIIR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 731
# Identity: 476/731 (65.1%)
# Similarity: 476/731 (65.1%)
# Gaps: 121/731 (16.6%)
# Score: 1527.0
#
#
#=======================================
BSNT_05647___ 1 ATGAAAAAAACAGTAATCATT---TGTATATATATCTTTCTTTTATTATC 47
|||||.|||.| ||.|||| |||||.|||||.||||||||||||..
BL03984___spo 1 ATGAAGAAATC---AAACATTGCCTGTATGTATATTTTTCTTTTATTAAT 47
BSNT_05647___ 48 TGGAGCGCTCGTAGGGCTGGCAAAAGAAGAGACGGCACAGAAATCGGAAA 97
.||||||||.|.|...||..|.|..||||||||.||.| ||||
BL03984___spo 48 AGGAGCGCTTGCAAATCTCACGACGGAAGAGACTGCCC---AATC----- 89
BSNT_05647___ 98 ATCAGCCGG------TG--GTCATACCGGATCAGGCGATTCGTTTGAGAA 139
|||||.||| || ||.||.||.|||.|.||||||||..||.|.|
BL03984___spo 90 ATCAGGCGGGCAGCCTGCCGTGATTCCTGATGAAGCGATTCGGCTGCGGA 139
BSNT_05647___ 140 TATTGGCAAACAGCGATA--GTGATCAAGATCAGCAATTAAAACGTCATA 187
|.||||||||||||||.| |.||.| ||.|||....|.|||||..|.|
BL03984___spo 140 TTTTGGCAAACAGCGACAGCGGGAGC--GACCAGAGCGTCAAACGCAAAA 187
BSNT_05647___ 188 TAAGAGACGCGGTGAATAAAGAAATCACAACTTGGGTAAAGGATA---TT 234
|.||.||.|.|||.||||||.||||.||.|..||||| |||.| |.
BL03984___spo 188 TCAGGGATGAGGTCAATAAACAAATTACGAAATGGGT---GGAAAACCTG 234
BSNT_05647___ 235 ACTTCTATTGAAGAAGCGCGTCGCGTGATTCGTTCAAAGCTGCCTGAAAT 284
||.||..||||.||||||.|.|..||.||..|.||.||||||||||||||
BL03984___spo 235 ACCTCGGTTGAGGAAGCGAGACAAGTCATCAGGTCGAAGCTGCCTGAAAT 284
BSNT_05647___ 285 CAAAGCAATTGCAA--------AGGAAACAATGGAGAAAGAAGGAGCG-- 324
|.|||...||||.| |.||||| |.||| ||.|..||
BL03984___spo 285 CCAAGAGGTTGCCATGGATGTCATGAAAC----GCGAA--AATGTTCGGC 328
BSNT_05647___ 325 AATCAGTCGATATCCG--TTGATTTTGACAAAATCTCGTTTCCGACAAAG 372
||||.||...|.|||| |||||..|| |.||.||||||||||||
BL03984___spo 329 AATCCGTGTCTGTCCGTTTTGATCGTG------TTTCATTTCCGACAAAG 372
BSNT_05647___ 373 CTTTACGGCAACATGGTATATCCTGCCGGTGAGTATGAAGCGATTTTGAT 422
||.||||||||.|||||.|||||.|||||.||.|||||.||..||||.||
BL03984___spo 373 CTATACGGCAATATGGTGTATCCGGCCGGAGAATATGAGGCTGTTTTAAT 422
BSNT_05647___ 423 TACGCTTGGAAACGGAGACGGCGCCAACTGGTGGTGTGTGCTGTTCCCGC 472
|||..|.||.||.|||||.||.||||||||||||||.||.|||||.||||
BL03984___spo 423 TACATTAGGCAAGGGAGAGGGAGCCAACTGGTGGTGCGTCCTGTTTCCGC 472
BSNT_05647___ 473 CCCTCTGCTTTCTCGATTTTTCTAACGGGGAAGCCGTCAAAGAACAAGAA 522
|.||.||||||||.||||||||.||.||||||||||
BL03984___spo 473 CACTTTGCTTTCTTGATTTTTCCAATGGGGAAGCCG-------------- 508
BSNT_05647___ 523 GATAAAGAAGCCTCAAAAAAGCAGACTGAA-AAAGTGCTTGAGGACGTA- 570
|||||..|||| |.|||| ||| |||..|||...||| |.|
BL03984___spo 509 --TAAAGTCGCCT-------GAAGAC-GAACAAACCGCTGCCGGA-GAAG 547
BSNT_05647___ 571 ACCGCTAAAGCGGAAAAAGCCAAAAAA-----------GAAGAGA----- 604
||||| |||.|| .|||||| ||.||.|
BL03984___spo 548 ACCGC-----CGGGAA----GAAAAAACAGACGCGGCGGATGAAACGGTA 588
BSNT_05647___ 605 ----------ATAAAGAAAAAGAAGACGGCACAGAAGTGAAATTCTTTTT 644
|||||||.|||||||| ||.||||||||||||.|||.|
BL03984___spo 589 TCTGGCATAGATAAAGATAAAGAAGA---CAAAGAAGTGAAATTTTTTCT 635
BSNT_05647___ 645 AGTCGAATGGATTTCCGACCTTTTTTCCTAA 675
.||||||||||||.|||..||||||||.|||
BL03984___spo 636 TGTCGAATGGATTACCGGGCTTTTTTCTTAA 666
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