Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05662 and BL03973
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:46
# Commandline: needle
# -asequence dna-align/BSNT_05662___rho.1.5803.seq
# -bsequence dna-align/BL03973___rho.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05662___rho-BL03973___rho.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05662___rho-BL03973___rho.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05662___rho
# 2: BL03973___rho
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1286
# Identity: 1051/1286 (81.7%)
# Similarity: 1051/1286 (81.7%)
# Gaps: 4/1286 ( 0.3%)
# Score: 4310.0
#
#
#=======================================
BSNT_05662___ 1 ATGAAAGACGTATCTATTTCCTCTTTGGAAAATATGAAATTGAAAGAGCT 50
.|||||||.|||||.|||||.||||||||||||||||||||.||||||||
BL03973___rho 1 GTGAAAGATGTATCCATTTCATCTTTGGAAAATATGAAATTAAAAGAGCT 50
BSNT_05662___ 51 TTATGAACTTGCAAGACATTATAAAATCTCCTATTACAGCAAACTGACAA 100
.|||||.||||||||.|||||||||.||||.|||||||||||||||||||
BL03973___rho 51 GTATGAGCTTGCAAGGCATTATAAAGTCTCTTATTACAGCAAACTGACAA 100
BSNT_05662___ 101 AAAAAGAACTCATTTTCGCCATTCTGAAAGCGAATGCAGAACAGGAAGAT 150
||||.|||||.|||||.||||||||||||||.||.||.||||||||||||
BL03973___rho 101 AAAAGGAACTGATTTTTGCCATTCTGAAAGCAAACGCCGAACAGGAAGAT 150
BSNT_05662___ 151 CTGCTGTTTATGGAAGGCGTTCTTGAGATCATCCAGTCTGAAGGTTTCGG 200
||||||||.|||||||||||..|.||.|||||||||||.|||||.|||||
BL03973___rho 151 CTGCTGTTCATGGAAGGCGTATTGGAAATCATCCAGTCCGAAGGGTTCGG 200
BSNT_05662___ 201 CTTCCTGAGACCGATCAACTACTCTCCAAGCTCAGAAGACATTTACATCT 250
|||.||.|||||||||||||||||.||.||.|||||.||.||.||.||.|
BL03973___rho 201 CTTTCTCAGACCGATCAACTACTCGCCTAGTTCAGAGGATATCTATATTT 250
BSNT_05662___ 251 CAGCTTCACAAATCCGCCGTTTCGATTTGCGGAACGGAGACAAAGTATCT 300
|.||.|||||||||||||||||.||||||.|.|||||.||.|||||.||.
BL03973___rho 251 CCGCCTCACAAATCCGCCGTTTTGATTTGAGAAACGGTGATAAAGTGTCC 300
BSNT_05662___ 301 GGCAAGGTTCGCCCGCCAAAAGAAAATGAGCGTTACTATGGACTTTTGCA 350
||.|||||.|||||.|||||||||||.||.||.||.||.||.||..||||
BL03973___rho 301 GGAAAGGTCCGCCCTCCAAAAGAAAACGAACGGTATTACGGCCTGCTGCA 350
BSNT_05662___ 351 CGTTGAAGCAGTAAACGGGGATGATCCCGAATCTGCAAAAGAGCGTGTGC 400
|||||||||.||.|||||.||.|||||.|||||.||||||||.||.||||
BL03973___rho 351 CGTTGAAGCGGTTAACGGCGACGATCCTGAATCAGCAAAAGAACGCGTGC 400
BSNT_05662___ 401 ATTTCCCGGCTCTTACGCCCCTTTATCCGGATCGTCAAATGGTGCTTGAA 450
|.||.|||||..|.|||||.||||||||.|||||.||.||||||||||||
BL03973___rho 401 ACTTTCCGGCATTAACGCCTCTTTATCCAGATCGCCAGATGGTGCTTGAA 450
BSNT_05662___ 451 ACAAAGCCGAACTTCTTGTCTACAAGAATTATGGACATGATGGCGCCGGT 500
||.||||||||...|.||||.|||.|.||.||||||||||||||||||||
BL03973___rho 451 ACGAAGCCGAATCACCTGTCAACACGGATCATGGACATGATGGCGCCGGT 500
BSNT_05662___ 501 TGGATTTGGGCAGCGCGGATTGATTGTTGCGCCGCCGAAAGCCGGAAAAA 550
.||.|||||.||||||||..||||.||.||.|||||.|||||.||.||||
BL03973___rho 501 CGGCTTTGGACAGCGCGGTCTGATCGTCGCTCCGCCTAAAGCGGGTAAAA 550
BSNT_05662___ 551 CGATGCTGCTGAAGGAAATTGCCAACAGCATTACAGCGAACCAGCCTGAA 600
|.|||||..||||.||.||.||.||||||||.|||.|.||.||.||.|||
BL03973___rho 551 CCATGCTCTTGAAAGAGATCGCGAACAGCATCACAACCAATCATCCGGAA 600
BSNT_05662___ 601 GCAGAGCTGATCGTGCTTTTAATTGACGAAAGACCTGAGGAAGTAACCGA 650
||.|||||||||||||||.|.||.||.|||||||||||||||||.|||||
BL03973___rho 601 GCGGAGCTGATCGTGCTTCTTATCGATGAAAGACCTGAGGAAGTGACCGA 650
BSNT_05662___ 651 TATCGAGCGCTCTGTAGCTGGGGATGTCGTCAGCTCAACGTTTGATGAAG 700
.|||||.||.||.||.||.||.||.||.|||||||||||||||||.||||
BL03973___rho 651 CATCGAACGTTCGGTTGCAGGAGACGTTGTCAGCTCAACGTTTGACGAAG 700
BSNT_05662___ 701 TGCCGGAAAACCATATCAAAGTGGCCGAGCTTGTGCTTGAACGTGCGATG 750
|.||.||||||||||||||.||||||||||||||..|.||||||||.|||
BL03973___rho 701 TTCCTGAAAACCATATCAAGGTGGCCGAGCTTGTATTGGAACGTGCAATG 750
BSNT_05662___ 751 CGTCTCGTGGAACACAAAAAAGACGTCATTATCCTGATGGACAGCATCAC 800
.|.||.||.||.||.|||||.|||||.||.||..|.|||||||||||.||
BL03973___rho 751 AGGCTTGTTGAGCATAAAAAGGACGTTATCATTTTAATGGACAGCATTAC 800
BSNT_05662___ 801 ACGGCTTGCCCGCGCCTACAACTTAGTGATTCCGCCAAGTGGAAGAACGC 850
|.||||||||||||||||.|||.|.||.||||||||.||.||.||||||.
BL03973___rho 801 AAGGCTTGCCCGCGCCTATAACCTTGTCATTCCGCCGAGCGGCAGAACGT 850
BSNT_05662___ 851 TTTCCGGGGGGATTGACCCAGCGGCG--TTCCACCGTCCGAAACGCTTCT 898
|.||||||||.||.||.|| ||||| |||||||||||.||.||.||||
BL03973___rho 851 TGTCCGGGGGAATCGATCC--CGGCGCTTTCCACCGTCCAAAGCGTTTCT 898
BSNT_05662___ 899 TTGGGGCTGCGAGAAATATCGAAGAGGGCGGCAGCTTAACCATCCTTGCT 948
||||.||.||..|.||.||.||||||||||||||||||||.|||||.||.
BL03973___rho 899 TTGGAGCAGCCCGCAACATTGAAGAGGGCGGCAGCTTAACGATCCTGGCG 948
BSNT_05662___ 949 ACGGCTCTGGTTGATACAGGTTCACGTATGGATGATGTCATTTATGAAGA 998
||.|||||.||.||.||.||.||.||.||||||||.|||||.|||||.||
BL03973___rho 949 ACCGCTCTCGTCGACACGGGCTCGCGGATGGATGACGTCATCTATGAGGA 998
BSNT_05662___ 999 ATTCAAGGGAACAGGCAACATGGAACTCCATCTTGACCGCTCTCTTGCCG 1048
|||.||.||||||||.||||||||.||.|||||||||||.||||||||.|
BL03973___rho 999 ATTTAAAGGAACAGGGAACATGGAGCTTCATCTTGACCGTTCTCTTGCGG 1048
BSNT_05662___ 1049 AGCGCCGCATCTTCCCTGCCATCGATATCCGCCGTTCAGGAACGCGCAAA 1098
|..|..|.|||||.||||||||.|||||.||||||||.||.|||||.|||
BL03973___rho 1049 AAAGAAGAATCTTTCCTGCCATTGATATTCGCCGTTCGGGTACGCGTAAA 1098
BSNT_05662___ 1099 GAAGAACTGCTTGTGCCTAAAGAGCATCTTGATCGTTTATGGTCTATCCG 1148
|||||.||.||.||.||.||||||||.|||||||||.|.|||||.|||||
BL03973___rho 1099 GAAGAGCTTCTCGTTCCGAAAGAGCACCTTGATCGTCTGTGGTCAATCCG 1148
BSNT_05662___ 1149 CAAAACGATGTCTGATTCACCTGATTTCGCAGAAAAGTTCATGAGAAAAA 1198
.||||||||||||||..|.|||||.||||..||.||.|||||||||||||
BL03973___rho 1149 GAAAACGATGTCTGACACGCCTGACTTCGTCGAGAAATTCATGAGAAAAA 1198
BSNT_05662___ 1199 TGAAAAAAACCAAAACAAACCAGGAATTTTTCGATATTCTCAATCAAGAA 1248
|||||||.||.|||||.||.|||||.||||||||||||||.|..||.|||
BL03973___rho 1199 TGAAAAAGACGAAAACGAATCAGGAGTTTTTCGATATTCTGATCCAGGAA 1248
BSNT_05662___ 1249 TGGAAACAGGCAAATCTATCATCTGCAAGAAGGTAA 1284
||||||||.||.|||.|.||..|||||||..|.|.|
BL03973___rho 1249 TGGAAACAAGCCAATATGTCTGCTGCAAGGCGCTGA 1284
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