Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05804 and BL03954

See Amino acid alignment / Visit BSNT_05804 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:52
# Commandline: needle
#    -asequence dna-align/BSNT_05804___ywdL.1.5803.seq
#    -bsequence dna-align/BL03954___gerQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05804___ywdL-BL03954___gerQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05804___ywdL-BL03954___gerQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05804___ywdL
# 2: BL03954___gerQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 601
# Identity:     367/601 (61.1%)
# Similarity:   367/601 (61.1%)
# Gaps:         119/601 (19.8%)
# Score: 1154.0
# 
#
#=======================================

BSNT_05804___      1 ATGAAACCGAAAAAAAATCAATATCAGCAAATGCAGGCATTTGATAATAT     50
                     ||||||...|||||||||||.|.|||||...|.||||...|||   |.||
BL03954___ger      1 ATGAAATTTAAAAAAAATCAGTTTCAGCCGCTTCAGGAGCTTG---AGAT     47

BSNT_05804___     51 GCAGGGGTATCAGCCTCAGTTTGGCGCCAACCCGTACCCGCAGCAAGGCC    100
                     ||.||..|..|.||..||..|.|||.||||.||.||.||||||       
BL03954___ger     48 GCCGGATTTCCGGCAGCAAATGGGCCCCAATCCTTATCCGCAG-------     90

BSNT_05804___    101 AAGGCTCACAAATGCAGCCAATGGG---GATGCAGCCAATGATGCCAATG    147
                                         |||||   ||||..||.|||| |.|||  |
BL03954___ger     91 --------------------ATGGGGCAGATGGGGCAAATG-TACCA--G    117

BSNT_05804___    148 CAGCAGGGACAGCA------------------AGGACAACAA--GGA-CA    176
                     ||||||||||||||                  |||.||.|||  |.| ||
BL03954___ger    118 CAGCAGGGACAGCAGCCTTTCACCCAAATGGGAGGGCAGCAATCGTATCA    167

BSNT_05804___    177 GCAGGGATTTGGATTCCCGG-----------GCCAGCAGCAG------GG    209
                     ||||           |||||           .|||||.||||      ||
BL03954___ger    168 GCAG-----------CCCGGTCCCCAGCTGACCCAGCCGCAGCCGGCAGG    206

BSNT_05804___    210 CGGC--GGT-TTTCAAATTCCATCGGG------GCCTACACCGTCAGGAC    250
                     ||.|  ||| ..||.|||.||.||.||      ||||.|||||       
BL03954___ger    207 CGTCCAGGTCCCTCCAATGCCTTCAGGACAGCAGCCTTCACCG-------    249

BSNT_05804___    251 CGGGCCAAAGCGTTCCCGGCATGCTGCCTGTTGAGGAATCTTACATCGAG    300
                             |||.|.||.|||||||||||..|||||.||||.|||||.||.
BL03954___ger    250 --------AGCATCCCAGGCATGCTGCCGCTTGAGCAATCCTACATTGAA    291

BSNT_05804___    301 AATATTTTGCGCCTGAATCGGGGAAAAACGGCCACCATTTATATGACATT    350
                     ||.||||||||.||.|||||.||||||..|||.|||.|.|||||||||||
BL03954___ger    292 AACATTTTGCGGCTCAATCGCGGAAAAGTGGCAACCGTATATATGACATT    341

BSNT_05804___    351 TGAAAACA-----GCAAGGAATGGGGCTCGAAGATTTTTCGCGGCGTCAT    395
                     .|||||||     |.|.||||||     ||||..|.|||||.||.|..||
BL03954___ger    342 CGAAAACAATCCGGAATGGAATG-----CGAAAGTCTTTCGGGGAGAAAT    386

BSNT_05804___    396 CGAAGCTGCAGGCCGGGATCACATTATTATCAGCGACCCGAAATCAGGAA    445
                     .|||||.||.|||||.||.|||||.|||.|.||||||...|||.|.||.|
BL03954___ger    387 TGAAGCAGCCGGCCGCGACCACATCATTTTAAGCGACAGAAAAACGGGCA    436

BSNT_05804___    446 CACGCTACCTGCTCCTGACAATCTACCTCGATTACATTACATTTGATGAA    495
                     |||||||..||||.||.|...|.||.||.||.||.|||||.||||||||.
BL03954___ger    437 CACGCTATTTGCTGCTCATGGTGTATCTTGACTATATTACGTTTGATGAG    486

BSNT_05804___    496 GAAATTGCTTATACGTATCCATATTCCATGGCGTCCTATTCGCCAAGATA    545
                     ...||..|||||...|||||.|||||.|||||.||.|||.|.||||||||
BL03954___ger    487 CCGATCACTTATGATTATCCGTATTCAATGGCCTCATATACACCAAGATA    536

BSNT_05804___    546 A    546
                     |
BL03954___ger    537 A    537


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