Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05681 and BL03924
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:47
# Commandline: needle
# -asequence dna-align/BSNT_05681___ywjF.1.5803.seq
# -bsequence dna-align/BL03924___ywjF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05681___ywjF-BL03924___ywjF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05681___ywjF-BL03924___ywjF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05681___ywjF
# 2: BL03924___ywjF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2176
# Identity: 1593/2176 (73.2%)
# Similarity: 1593/2176 (73.2%)
# Gaps: 119/2176 ( 5.5%)
# Score: 5673.0
#
#
#=======================================
BSNT_05681___ 1 ATGAGCGGCTTTCTCATCG--CAAATACATT--ATTATTTCTGATTGTAA 46
||||..|.|||.|| .||| .||.|.|||| .|| |||..| |||||
BL03924___ywj 1 ATGAATGTCTTGCT-GTCGTTGAATTTCATTGCGTT-TTTAGG--TGTAA 46
BSNT_05681___ 47 CCGCTTACGCTGTCTATTTGTTTGTGTATTTGGTCAAAACGAGACTGGCC 96
|||.||||||.||.|||.||||.||.||||||.|||.|||||||.|....
BL03924___ywj 47 CCGTTTACGCCGTTTATCTGTTCGTCTATTTGATCAGAACGAGAATCAGT 96
BSNT_05681___ 97 TACATCAAGCTCGGCCAGAAAGAACAATTTGATCAACGGTTCAAGGAACG 146
|||||||.||||||.||.|||||..|.||||||.|.|||...|||||.||
BL03924___ywj 97 TACATCAGGCTCGGACAAAAAGAGGATTTTGATAAGCGGACGAAGGAGCG 146
BSNT_05681___ 147 GCTTCACGACATATGGGTGAATGTATTCGGACAGAAAAAACTGCTCAAGG 196
.|||||..|.|||||||.|||.||.|||||.||.||.||||||||.||.|
BL03924___ywj 147 CCTTCAAAAGATATGGGAGAACGTGTTCGGCCAAAAGAAACTGCTTAAAG 196
BSNT_05681___ 197 ACAAGAAAAGCGGAATCATTCACGTCATGTTTTTCTACGGATTTATATTG 246
|.||.||||||||.|||||.||.|||||||||||.|||||.|||||..|.
BL03924___ywj 197 ATAAAAAAAGCGGCATCATCCATGTCATGTTTTTTTACGGCTTTATTCTC 246
BSNT_05681___ 247 GTTCAGTTCGGAGCAATTGACTTTATCATTAAAGGACTGGCTCCCGGCCG 296
||||||||||||||.||.||.|||||..|.|||||.||.|.|||.|
BL03924___ywj 247 GTTCAGTTCGGAGCGATCGATTTTATTTTGAAAGGGCTCGTTCCTG---- 292
BSNT_05681___ 297 GAATC------TGCCGCTTGGCCCGGTCTATCCCGCCTTCACCTTTTTTC 340
||| |.|||||||||...|||||.||.||.||.||.|||||||
BL03924___ywj 293 --ATCAAGGCATTCCGCTTGGCGGCGTCTACCCGGCGTTTACGTTTTTTC 340
BSNT_05681___ 341 AGGAAATTGTTACGTTTCTCATTTTAATTGCTGTTGGGTGGGCATTCTAC 390
|||||||.||.||..|..|.|||||||||||.||.|..|||||.||..||
BL03924___ywj 341 AGGAAATCGTCACACTGATGATTTTAATTGCGGTAGTCTGGGCTTTTCAC 390
BSNT_05681___ 391 AGACGTTACATCGAAAAGCTCGTGAGGCTGAAACGCGGTTTCAAAGCCGG 440
||.||.||.||.|||||.|||||.||||||||.|||..|||.||..|.||
BL03924___ywj 391 AGGCGGTATATAGAAAAACTCGTCAGGCTGAAGCGCAATTTTAAGTCGGG 440
BSNT_05681___ 441 ACTCGTTCTCATTTTTATCGGAGGTTTAATGCTGACCGTTCTGCTTGGGA 490
..||||.|||||..|.|||||.||.||.|||.|.||||||.|.||.||.|
BL03924___ywj 441 GATCGTGCTCATGCTGATCGGCGGCTTGATGTTTACCGTTTTACTCGGAA 490
BSNT_05681___ 491 ACGGGATGAATCTGATTTGGCATGAGCATGGGCTTTCTTGGAGCGAGCCA 540
||||.|||||..||||.||||||||.|||....|.||.|||..|||.||.
BL03924___ywj 491 ACGGTATGAACATGATCTGGCATGAACATTCATTATCATGGCACGAACCG 540
BSNT_05681___ 541 ATTGCCTCAGGTATTGCGTTTATGC--------TTAGCGGAGTCGGGAAA 582
||.||.|||||.|| ||.||.||| ||| |.|||.||
BL03924___ywj 541 ATGGCATCAGGCAT--CGCTTTTGCCTTCGGCTTTA------TGGGGGAA 582
BSNT_05681___ 583 ACAGGT---GCGGCGGTGATTTTCTATATCGCATGGTGGATCCATCTTCT 629
||.|.| |||||.||| |||||....||.||||||...||.|||||
BL03924___ywj 583 ACCGCTTCAGCGGCAGTG---TTCTACGCGGCGTGGTGGGCGCACCTTCT 629
BSNT_05681___ 630 GTTCTTGCTTAGCTTTTTAGTGTACGTGCCTCAGTCTAAGCATGCCCATT 679
..||.||||.|..||||||||.||.||.||.|||||.|||||.|||||.|
BL03924___ywj 630 CATCCTGCTGACATTTTTAGTCTATGTACCGCAGTCAAAGCACGCCCACT 679
BSNT_05681___ 680 TAATCGCCGGCCCGGCAAACGTCTTTTTCAATAGAATG--GAATCTGCCG 727
||||.|||||.|||||||||||.|||||||...|..|| .||.| |.|
BL03924___ywj 680 TAATTGCCGGACCGGCAAACGTATTTTTCAGCCGGCTGACAAACC--CGG 727
BSNT_05681___ 728 GAAAACTTGAAAAAATTGATTTTACCGACGAAACGAAAGAAAGCTACGGA 777
||||.|||.|||||||.||||||...||.|||||.|||||||..|.|||.
BL03924___ywj 728 GAAAGCTTCAAAAAATCGATTTTGAAGATGAAACAAAAGAAACGTTCGGC 777
BSNT_05681___ 778 GCGGGAAAAATTGAGGATTTCAGGCAGTCTCAGCTGCTTGATCTGTACGC 827
|..|||...||.|||||.|||||||||||.||||||.|.||.||.|||||
BL03924___ywj 778 GTCGGACGGATCGAGGAATTCAGGCAGTCCCAGCTGATCGACCTTTACGC 827
BSNT_05681___ 828 GTGTGTCGAGTGCGGCCGCTGTACCAATATGTGCCCTGCAACAGGCACCG 877
.||.||.||.|||||.||||||||||||||||||||.||.|||||.||.|
BL03924___ywj 828 ATGCGTGGAATGCGGGCGCTGTACCAATATGTGCCCGGCTACAGGAACAG 877
BSNT_05681___ 878 GAAAAATGCTGTCTCCGATGGACTTGATTTTACGTCTCAGAGACCATCTC 927
|.||.|||||.||.||||||||..|||||||.||.||||||||||||.|.
BL03924___ywj 878 GCAAGATGCTTTCGCCGATGGATCTGATTTTGCGGCTCAGAGACCATTTG 927
BSNT_05681___ 928 ACGGAAAAAGGCGCTGCCGTCACCTCGCGCTCCCCATGGGTGCCCGCAGC 977
||.|||||.||.||.||.||.||.|||.|..|.||.|||||.|||||| |
BL03924___ywj 928 ACAGAAAAGGGAGCAGCAGTGACATCGAGAACGCCTTGGGTACCCGCA-C 976
BSNT_05681___ 978 AGC-GTTTCGGCATACGAGAGGCAATCAGCTGGCTGCGGCGTCAGCGGGC 1026
.|| .||||.||||||||.||||||.||||||||...||||.||| |||.
BL03924___ywj 977 CGCTCTTTCAGCATACGAAAGGCAACCAGCTGGCCATGGCGGCAG-GGGG 1025
BSNT_05681___ 1027 AG-CGGATCGCAGGAAGCCGCAGCGGC-GCTTGA-----TTACAATCCAA 1069
|| .||.||...||| |||||| ||||.| ||||||.||.|
BL03924___ywj 1026 AGAAGGGTCAAGGGA------AGCGGCTGCTTCAGAACTTTACAACCCGA 1069
BSNT_05681___ 1070 GCTTGATCGGCGACGTCATCACAGAGGAAGAAATTTGGGCATGCACCACT 1119
||||.|||||||||.||||||||||.||||||||||||||.|||||.||.
BL03924___ywj 1070 GCTTAATCGGCGACATCATCACAGAAGAAGAAATTTGGGCCTGCACAACA 1119
BSNT_05681___ 1120 TGCCGAAACTGTGAGGATCAATGCCCGGTCATGAATGAGCACGTGGATAA 1169
|||||.||.|||||.|||||.|||||||||||||||||||||||.|||||
BL03924___ywj 1120 TGCCGGAATTGTGAAGATCAGTGCCCGGTCATGAATGAGCACGTCGATAA 1169
BSNT_05681___ 1170 AATCATCGACCTCCGCCGCTACCTCGTACTGACAGAAGGAAAAATGGA-- 1217
.||||||||.|||||||||||.|||||.||.|||||||||||||||||
BL03924___ywj 1170 GATCATCGATCTCCGCCGCTATCTCGTGCTCACAGAAGGAAAAATGGATG 1219
BSNT_05681___ 1218 CAGTGACGCCCAGCGCGCAATGACAAGTATTGAGCGGCAGGGGAATCCGT 1267
|| ||.|||||.|||||.|||||.||.|||||..||||||||||.||.|
BL03924___ywj 1220 CA--GATGCCCAACGCGCCATGACGAGCATTGAAAGGCAGGGGAACCCTT 1267
BSNT_05681___ 1268 GGGGACTCAACCGCAAGGAACGTGAAAATTGGCGTGAT----GAGGCGCC 1313
|||||.|.|||||.||.|||||||||||.||||||||| |||.|
BL03924___ywj 1268 GGGGATTAAACCGAAAAGAACGTGAAAACTGGCGTGATATAAGAGAC--- 1314
BSNT_05681___ 1314 GGATGCTGAGATTCCGACTGTAAAAGAAATGAAAAAAGAAGGAAAAGAAT 1363
||||.||||.|.|||||.||||||||||||||.|||.||||..|....|
BL03924___ywj 1315 -GATGTTGAGGTGCCGACAGTAAAAGAAATGAAGAAAAAAGGCGAGTCCT 1363
BSNT_05681___ 1364 TTGAGTACCTTTTCTGGGTAGGCTCCATGGGGTCTTACGACAACAGAAGC 1413
||||.|||||.||.|||||.||.||.|||||.||.||.|||...||||||
BL03924___ywj 1364 TTGAATACCTGTTTTGGGTCGGGTCGATGGGATCGTATGACCGGAGAAGC 1413
BSNT_05681___ 1414 CAGAAAATCGCAA----TTTCCTTTGCCAAGCTGCTCAATCACGCGGGCG 1459
|||||.|||||.| ||||..|.|| ||.||||||||.||.||.|
BL03924___ywj 1414 CAGAAGATCGCCATGGCTTTCGCTCGC----CTCCTCAATCAAGCCGGGG 1459
BSNT_05681___ 1460 TGTCCTTCGCGATCCTCGGCAATAAAGAAAAAAATTCAGGAGACACGCCG 1509
|..|.||||||||..|.|||||||||||||||||||||||.||.||||||
BL03924___ywj 1460 TCACGTTCGCGATATTAGGCAATAAAGAAAAAAATTCAGGCGATACGCCG 1509
BSNT_05681___ 1510 CGCCGCCTCGGAAATGAATTTTTGTTCCAAGAGCTGGCTGAGAAGAATAT 1559
.|.||.||.||.||.||.|||||.|||||.|||||.||||..||.||.||
BL03924___ywj 1510 AGACGGCTTGGCAACGAGTTTTTATTCCAGGAGCTAGCTGCAAAAAACAT 1559
BSNT_05681___ 1560 TTCTGAATTTGAAAAAAATGATGTCAAAAAAATCGTTACGATCGATCCCC 1609
|...||||||||||||||||||||..|||||||.||.||.|||||.||.|
BL03924___ywj 1560 TGAGGAATTTGAAAAAAATGATGTTCAAAAAATTGTAACTATCGACCCGC 1609
BSNT_05681___ 1610 ATGCATACAATTTATTTAAAAACGAATATCCGGATTTCGGATTTGAAGGC 1659
|||||||||||.|.||.|||||.||||||||.|||||.|| |.||||.||
BL03924___ywj 1610 ATGCATACAATATTTTCAAAAATGAATATCCTGATTTTGG-TCTGAAAGC 1658
BSNT_05681___ 1660 -GAGGTTTATCATCATACAGAAGTGCTGGCCGAGCT--TGTGAAAAACGG 1706
||.||||||||||||||||||.|.||.||.|..|| | ||||.|| ||
BL03924___ywj 1659 GGAAGTTTATCATCATACAGAAATTCTTGCTGCCCTCAT-TGAAGAA-GG 1706
BSNT_05681___ 1707 AAAATTAAAGCCGCAGCACCCGCTTCATGAGACGATTACCTTCCATGATT 1756
|||..|.||.||..||...|||.||||.||.||..|.|||||.|||||||
BL03924___ywj 1707 AAAGCTGAAACCTGAGTTTCCGGTTCACGAAACCGTCACCTTTCATGATT 1756
BSNT_05681___ 1757 CATGCTATTTGGGCCGGTACAATGAAGTCTATGATCCGCCGAGAGAGATT 1806
||||||||||||||||.|||||.||.||.||.|||||||||.|.|..|||
BL03924___ywj 1757 CATGCTATTTGGGCCGCTACAACGAGGTTTACGATCCGCCGCGCGCTATT 1806
BSNT_05681___ 1807 TTGAAAGGCATTCCGGGCGTGCAGCTTGTT-----GAAATGGAGAGAAAC 1851
.|......||||||||||.|.| ||| |||||||||.|.|.|
BL03924___ywj 1807 CTCCGCTCCATTCCGGGCATCC-----GTTTAGCGGAAATGGAGCGCAGC 1851
BSNT_05681___ 1852 CGGGAAACCGGCATGTGCTGCGGAGCTGGCGGGGGATTAATGTGGATGGA 1901
||.||||.|||.||||||||||||||.||.||.||..|.|||||||||||
BL03924___ywj 1852 CGTGAAAACGGAATGTGCTGCGGAGCGGGGGGCGGCCTCATGTGGATGGA 1901
BSNT_05681___ 1902 GGAAGAAACAGGCAACAGGATTAACGTCGCCAGGACAGAGCAAGCGCTC- 1950
||||||..|.|||...|||||.|||||.|||||.||.|||||.||||||
BL03924___ywj 1902 GGAAGAGGCGGGCGCGAGGATCAACGTTGCCAGAACGGAGCAGGCGCTCA 1951
BSNT_05681___ 1951 GCAGTCAAC-CCATCGGTGATCAGTTCCGGCTGTCCGTACTGTCTCACAA 1999
||| ||.| ||.||.||.|||||.||.||||||||.||||||.|.||.|
BL03924___ywj 1952 GCA--CATCACCTTCTGTCATCAGCTCGGGCTGTCCTTACTGTTTGACGA 1999
BSNT_05681___ 2000 TGCTTGGGGACGGCACAAAGGCGAAGGAAGCTGAAGACCAAGTCAAAACG 2049
||||.||.|||||.|||||.||.||||||...||.||.||.|||...|||
BL03924___ywj 2000 TGCTCGGCGACGGAACAAAAGCCAAGGAATTGGAGGATCAGGTCGGCACG 2049
BSNT_05681___ 2050 TACGACGTCGTCGAGCTTCTGGCTCAATCCGTTTTAGGCGCTGATCTGAA 2099
||.||.||.|..|||||.||.|..|...||||.||.||..|.||.| ||
BL03924___ywj 2050 TATGATGTAGCGGAGCTGCTTGAACGCGCCGTATTCGGGTCAGAGC--AA 2097
BSNT_05681___ 2100 AATGGGGGAGAAGCAATGA------- 2118
|| |||| .|||.
BL03924___ywj 2098 AA------AGAA--CATGCCTCATAG 2115
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