Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04569 and BL03904

See Amino acid alignment / Visit BSNT_04569 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:43
# Commandline: needle
#    -asequence dna-align/BSNT_04569___yuaB.1.5803.seq
#    -bsequence dna-align/BL03904___yuaB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04569___yuaB-BL03904___yuaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04569___yuaB-BL03904___yuaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04569___yuaB
# 2: BL03904___yuaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity:     357/602 (59.3%)
# Similarity:   357/602 (59.3%)
# Gaps:         118/602 (19.6%)
# Score: 961.5
# 
#
#=======================================

BSNT_04569___      1 ATGAAACGCAAATTATTATC-TTCT---TTGGCAAT-TAGTGCATTAAGT     45
                     .|||||.|  |||  .|||| ||||   |||.|||| |.| ||..|.|||
BL03904___yua      1 TTGAAAAG--AAT--GTATCGTTCTAAATTGTCAATCTTG-GCGGTTAGT     45

BSNT_04569___     46 CTCG-------GGTTACTCGTTTCTGCACCTACAGCTTCTTTC-------     81
                     ||||       ||.|  |||.||.|   |||.|  ||||.|||       
BL03904___yua     46 CTCGTGATGATGGCT--TCGATTTT---CCTGC--CTTCGTTCCAGGCCA     88

BSNT_04569___     82 GCGGCTGAATCTACATCAACTAAAGCTCATACTGAATCTACTATGAGAAC    131
                     |||.|..||       ||||.|||      |||||||||           
BL03904___yua     89 GCGCCCAAA-------CAACAAAA------ACTGAATCT-----------    114

BSNT_04569___    132 ACAGTCTAC--------------AGCTTCATTG--TTCG----CAACAAT    161
                        ||||||              .|||||.|||  ||||    .||||  
BL03904___yua    115 ---GTCTACCGCCCGGCTGCGAGCGCTTCCTTGTATTCGGTGATAACA--    159

BSNT_04569___    162 CACTGGCGCCAGCAAAACGGAATGGTCTTTCTCAGATATCGAATTGACTT    211
                         ||||||||||||..|||.|||||.|||||.|||||.||.||.||.|
BL03904___yua    160 ----GGCGCCAGCAAACAGGAGTGGTCGTTCTCGGATATTGAGTTAACAT    205

BSNT_04569___    212 ACCGTCCAAACACGCTTCTCAGCCTTGGCGTT-------ATGGAGTTTAC    254
                     |.|||||.||       ||||..|||||||.|       .|.||.|||||
BL03904___yua    206 ATCGTCCTAA-------CTCAATCTTGGCGCTGGGAACGGTTGAATTTAC    248

BSNT_04569___    255 ATTGCCAAGCGGATTTACTGCAAACACGAAAGACACACTGAACGGAAATG    304
                     .|||||....||||||.|.||.|..||||||||.||..||||.||||..|
BL03904___yua    249 TTTGCCGTCGGGATTTTCCGCCACAACGAAAGATACGGTGAATGGAAGAG    298

BSNT_04569___    305 CCTTGCGTACAACA---CAGATCCTCAATAACGGGAAAACAGTAAGAGTT    351
                     |   ||..||||||   ||.||..|.||.|||||.|||||.|||||..|.
BL03904___yua    299 C---GCTGACAACAGGGCAAATTTTGAACAACGGAAAAACGGTAAGGCTG    345

BSNT_04569___    352 CCTTTGGCACTTGATTTGTTAGGAGCTGGCGAATTTAAATTAAAACTGAA    401
                     ||..|..||.|||||.||.|.||...||..||.|||||..|....|||..
BL03904___yua    346 CCGCTTACAATTGATCTGCTGGGCATTGCGGAGTTTAAGCTGGTGCTGGC    395

BSNT_04569___    402 TAACAAAACACTTCCTGCCGCTGGTACATACACTTTCCGTGCAGAGAATA    451
                     .||||||||.||.||||||||.||.|..||.||.|||||.||.|||||.|
BL03904___yua    396 CAACAAAACGCTGCCTGCCGCAGGAAAGTATACATTCCGGGCGGAGAACA    445

BSNT_04569___    452 AATCATTAAGCATCGGAAATAAATTTTACGCAGAAGC--CAGCATTGACG    499
                     .|..|.|..|..|||||...|..||.||.||.|||.|  ||  ||.||.|
BL03904___yua    446 GAGTACTGGGGCTCGGATCGACTTTCTATGCCGAATCTTCA--ATCGAAG    493

BSNT_04569___    500 TGGCTAA-----GCGCAGCACTCCTCCGACTCAGCCTTGCGGTTGCAACT    544
                     | ||.||     |||    |||||.||.||.|||||.|||...|||||.|
BL03904___yua    494 T-GCAAAAACGGGCG----ACTCCGCCTACACAGCCGTGCAACTGCAAGT    538

BSNT_04569___    545 AA    546
                     ||
BL03904___yua    539 AA    540


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