Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04569 and BL03904
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:43
# Commandline: needle
# -asequence dna-align/BSNT_04569___yuaB.1.5803.seq
# -bsequence dna-align/BL03904___yuaB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04569___yuaB-BL03904___yuaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04569___yuaB-BL03904___yuaB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04569___yuaB
# 2: BL03904___yuaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity: 357/602 (59.3%)
# Similarity: 357/602 (59.3%)
# Gaps: 118/602 (19.6%)
# Score: 961.5
#
#
#=======================================
BSNT_04569___ 1 ATGAAACGCAAATTATTATC-TTCT---TTGGCAAT-TAGTGCATTAAGT 45
.|||||.| ||| .|||| |||| |||.|||| |.| ||..|.|||
BL03904___yua 1 TTGAAAAG--AAT--GTATCGTTCTAAATTGTCAATCTTG-GCGGTTAGT 45
BSNT_04569___ 46 CTCG-------GGTTACTCGTTTCTGCACCTACAGCTTCTTTC------- 81
|||| ||.| |||.||.| |||.| ||||.|||
BL03904___yua 46 CTCGTGATGATGGCT--TCGATTTT---CCTGC--CTTCGTTCCAGGCCA 88
BSNT_04569___ 82 GCGGCTGAATCTACATCAACTAAAGCTCATACTGAATCTACTATGAGAAC 131
|||.|..|| ||||.||| |||||||||
BL03904___yua 89 GCGCCCAAA-------CAACAAAA------ACTGAATCT----------- 114
BSNT_04569___ 132 ACAGTCTAC--------------AGCTTCATTG--TTCG----CAACAAT 161
|||||| .|||||.||| |||| .||||
BL03904___yua 115 ---GTCTACCGCCCGGCTGCGAGCGCTTCCTTGTATTCGGTGATAACA-- 159
BSNT_04569___ 162 CACTGGCGCCAGCAAAACGGAATGGTCTTTCTCAGATATCGAATTGACTT 211
||||||||||||..|||.|||||.|||||.|||||.||.||.||.|
BL03904___yua 160 ----GGCGCCAGCAAACAGGAGTGGTCGTTCTCGGATATTGAGTTAACAT 205
BSNT_04569___ 212 ACCGTCCAAACACGCTTCTCAGCCTTGGCGTT-------ATGGAGTTTAC 254
|.|||||.|| ||||..|||||||.| .|.||.|||||
BL03904___yua 206 ATCGTCCTAA-------CTCAATCTTGGCGCTGGGAACGGTTGAATTTAC 248
BSNT_04569___ 255 ATTGCCAAGCGGATTTACTGCAAACACGAAAGACACACTGAACGGAAATG 304
.|||||....||||||.|.||.|..||||||||.||..||||.||||..|
BL03904___yua 249 TTTGCCGTCGGGATTTTCCGCCACAACGAAAGATACGGTGAATGGAAGAG 298
BSNT_04569___ 305 CCTTGCGTACAACA---CAGATCCTCAATAACGGGAAAACAGTAAGAGTT 351
| ||..|||||| ||.||..|.||.|||||.|||||.|||||..|.
BL03904___yua 299 C---GCTGACAACAGGGCAAATTTTGAACAACGGAAAAACGGTAAGGCTG 345
BSNT_04569___ 352 CCTTTGGCACTTGATTTGTTAGGAGCTGGCGAATTTAAATTAAAACTGAA 401
||..|..||.|||||.||.|.||...||..||.|||||..|....|||..
BL03904___yua 346 CCGCTTACAATTGATCTGCTGGGCATTGCGGAGTTTAAGCTGGTGCTGGC 395
BSNT_04569___ 402 TAACAAAACACTTCCTGCCGCTGGTACATACACTTTCCGTGCAGAGAATA 451
.||||||||.||.||||||||.||.|..||.||.|||||.||.|||||.|
BL03904___yua 396 CAACAAAACGCTGCCTGCCGCAGGAAAGTATACATTCCGGGCGGAGAACA 445
BSNT_04569___ 452 AATCATTAAGCATCGGAAATAAATTTTACGCAGAAGC--CAGCATTGACG 499
.|..|.|..|..|||||...|..||.||.||.|||.| || ||.||.|
BL03904___yua 446 GAGTACTGGGGCTCGGATCGACTTTCTATGCCGAATCTTCA--ATCGAAG 493
BSNT_04569___ 500 TGGCTAA-----GCGCAGCACTCCTCCGACTCAGCCTTGCGGTTGCAACT 544
| ||.|| ||| |||||.||.||.|||||.|||...|||||.|
BL03904___yua 494 T-GCAAAAACGGGCG----ACTCCGCCTACACAGCCGTGCAACTGCAAGT 538
BSNT_04569___ 545 AA 546
||
BL03904___yua 539 AA 540
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