Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05814 and BL03894

See Amino acid alignment / Visit BSNT_05814 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence dna-align/BSNT_05814___ywdF.1.5803.seq
#    -bsequence dna-align/BL03894___ywdF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05814___ywdF-BL03894___ywdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05814___ywdF-BL03894___ywdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05814___ywdF
# 2: BL03894___ywdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 856
# Identity:     581/856 (67.9%)
# Similarity:   581/856 (67.9%)
# Gaps:          86/856 (10.0%)
# Score: 1847.0
# 
#
#=======================================

BSNT_05814___      1 ATGAAGATTTCTATCGTAATTGTGACCTATAATCGGATTCCGGCTTTGTG     50
                     |||||.||.|||||||||.||||.||..||||||||.|..|.||||||||
BL03894___ywd      1 ATGAACATATCTATCGTAGTTGTCACGCATAATCGGGTCACCGCTTTGTG     50

BSNT_05814___     51 TGA---GCTTTTGGAGTCGATTTCCCGCCAGAC-----CTTGAAGCCGTA     92
                     .||   ||||   ||.||.|||    ||.|.||     .||||| ||||.
BL03894___ywd     51 CGAATTGCTT---GAATCTATT----GCAAAACAGTCTGTTGAA-CCGTT     92

BSNT_05814___     93 TGAAATTATTATTGTGAATGATGCCGGGGAATCGGTCGTGCCGGTCAA--    140
                     ||||.||||||||||.||||||||||||||       |.||  |||.|  
BL03894___ywd     93 TGAAGTTATTATTGTTAATGATGCCGGGGA-------GAGC--GTCGACT    133

BSNT_05814___    141 ------AGC-ACTGTATCCGGAGCTGCCGATTGCTGTCATCAATTT---A    180
                           ||| .||.|||.|.|||||.|||||....||.||..||.|   |
BL03894___ywd    134 TTGTTGAGCGCCTTTATTCAGAGCTTCCGATCAGAGTTATACATCTGAAA    183

BSNT_05814___    181 GAAAA---GAACTCGGGGCATGTGGCTGCGAGAAATGCCGGTGTAAAAGA    227
                     |||||   |||      ||||||....|||||||||...||.||.|||||
BL03894___ywd    184 GAAAACGTGAA------GCATGTAAAAGCGAGAAATATAGGGGTGAAAGA    227

BSNT_05814___    228 GGCGTCTGGCGA--TTGCATTATGCTGTGTGATGACGATGATTTCTTTAC    275
                     .||.||.||.||  ||  |||||||||||||||||.||||||||.||.||
BL03894___ywd    228 AGCTTCCGGAGACGTT--ATTATGCTGTGTGATGATGATGATTTTTTCAC    275

BSNT_05814___    276 GCCAGGGCATATCGAGAAAATGGCAAAGGAAATAGAAACGGCTGACTTCG    325
                     |||..|.|||||.||||.||||...||.|...|.||.||.||.||.||.|
BL03894___ywd    276 GCCGTGCCATATGGAGAGAATGTTGAATGCGCTGGAGACCGCCGATTTTG    325

BSNT_05814___    326 TTCATTCTGATGCGGAAATAGTTTCGTTTGAAGAGAAATACGGA-ACAAG    374
                     ||.||||.|||||.||.||.||.||.||||||||.|||.| ||| |..||
BL03894___ywd    326 TTTATTCGGATGCTGAGATTGTGTCTTTTGAAGAAAAAGA-GGATATGAG    374

BSNT_05814___    375 ATATCCAGTGTCA---CGGAAATTGTTTGCTTATACCGCTGACTATGAGG    421
                     |..|||   |.||   ||..|..|.|||||.|||.||..|.|||..||.|
BL03894___ywd    375 AATTCC---GACAAGCCGTTACCTTTTTGCGTATTCCTTTAACTTGGATG    421

BSNT_05814___    422 ATATGAGAGTGTTTTCTACATACGTGCCGTCGGGCAGCATGTACAGACGT    471
                     |.|||||...||||||||||||.||.||.||.||.||.|||||||.|||.
BL03894___ywd    422 AAATGAGGAAGTTTTCTACATATGTTCCTTCAGGAAGTATGTACAAACGA    471

BSNT_05814___    472 TTTCTGCATGATGAAATCGGGTATTTCGATGCTGATGTGCACAATTACTG    521
                     |.|||.|||||.||||||||.||.||||||.|||..||.||||||||.||
BL03894___ywd    472 TCTCTTCATGACGAAATCGGCTACTTCGATCCTGCCGTCCACAATTATTG    521

BSNT_05814___    522 GGATTGGGATTTTTATCTGCGCGCGGCCAA--GGATTACCGGGTGAAGCG    569
                     |||||||||.||||..|||.|.|||||..|  ||.||  ||.|||||..|
BL03894___ywd    522 GGATTGGGACTTTTTCCTGAGAGCGGCTGAGCGGTTT--CGCGTGAAAAG    569

BSNT_05814___    570 TGTCCCTTGCGCCAGTGTGATTTATGC--CTTCAGTGACGCGGGAGACAA    617
                     .||.||||.|||.||.||.||.|||||  .||||  |||..|||.|||||
BL03894___ywd    570 AGTTCCTTTCGCAAGCGTAATCTATGCGTTTTCA--GACCAGGGTGACAA    617

BSNT_05814___    618 TCAGTCTGCGGACCTTGGCGCCAAGCGGAAGCAATATTTGGATCGT-TTA    666
                     .|||||.|..||.|||||||..|.|.||.||.|.||.|||||| || ||.
BL03894___ywd    618 CCAGTCCGGAGATCTTGGCGGAATGAGGCAGTATTACTTGGAT-GTCTTG    666

BSNT_05814___    667 AGTGAAAAGCA-CGGACTCGGGGAGCTGCCGACGAAAAACTTTGCCGTCC    715
                     ||||||||||| |.| ||.||..||||||||||.||.||||||..|||.|
BL03894___ywd    667 AGTGAAAAGCATCAG-CTTGGCAAGCTGCCGACAAAGAACTTTTTCGTGC    715

BSNT_05814___    716 TGCTTGAAGAGCCTGAGATGAAGAGGCGGGAAGCAAAAAGTGAAATGGTT    765
                     |.||.|||||.||||..|||||.|...|||||||..||||.|||||.||.
BL03894___ywd    716 TACTCGAAGAACCTGCCATGAAAAAAAGGGAAGCGGAAAGCGAAATCGTC    765

BSNT_05814___    766 TGGGATGGCGAGCCTGTCTATTCCAGACTTCATCGTTCGTAA--------    807
                     ||||||||..|.||.||....|||||.| |||..|.| |.||        
BL03894___ywd    766 TGGGATGGAAAACCGGTTGCATCCAGGC-TCACTGCT-GCAAGACAATTG    813

BSNT_05814___    807 ------    807
                           
BL03894___ywd    814 AACTAA    819


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05814 and BL03894

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
