Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05819 and BL03890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:53
# Commandline: needle
# -asequence dna-align/BSNT_05819___sacP.1.5803.seq
# -bsequence dna-align/BL03890___sacP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05819___sacP-BL03890___sacP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05819___sacP-BL03890___sacP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05819___sacP
# 2: BL03890___sacP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1410
# Identity: 1041/1410 (73.8%)
# Similarity: 1041/1410 (73.8%)
# Gaps: 54/1410 ( 3.8%)
# Score: 3652.0
#
#
#=======================================
BSNT_05819___ 1 ATGGATT-ACAAAGAGACTGCAAAACGCCTCATTGAGCTTCTCGGAGGGA 49
|| |||| |.|||||.|..||...|||.||.||..|||||||.||.||..
BL03890___sac 1 AT-GATTCATAAAGAAATCGCTGTACGTCTTATACAGCTTCTTGGCGGAG 49
BSNT_05819___ 50 AAGAAAATATTATCAGCGCGGCTCATTGTGCAACAAGACTGCGTTTAGTG 99
||||.|||.|.|||||.||.|||||||||||.|||||.||.|||||.|||
BL03890___sac 50 AAGATAATGTCATCAGTGCAGCTCATTGTGCGACAAGGCTTCGTTTGGTG 99
BSNT_05819___ 100 ATGAAAGATGAATCAAAGATAGATCAAGCACAAGTAGAAGAGCTTGATGG 149
||.||.||.|||.||||.||.||.||.|.|.|.||.||||||||.||.||
BL03890___sac 100 ATTAAGGACGAAGCAAAAATCGACCAGGAAAAGGTCGAAGAGCTGGAAGG 149
BSNT_05819___ 150 CGTCAAAGGGGC--TTTCAGCAGCTCTGGCCAGTACCAGATCATTTTCGG 197
.||.|||||.|| ||||| ||||||||.||.||||||||.||||||||
BL03890___sac 150 TGTAAAAGGAGCCTTTTCA--AGCTCTGGTCAATACCAGATTATTTTCGG 197
BSNT_05819___ 198 AACAGGCCTTGTGAATAAAGTATTCGATGCCTTTGCTAAAGAAGCTGATA 247
||||||.|||||.||||||||.|..||....|||||.|||| ||||||
BL03890___sac 198 AACAGGGCTTGTTAATAAAGTGTATGAACAGTTTGCCAAAG-AGCTGA-- 244
BSNT_05819___ 248 TCGAGCGTGAAGAACACGTAAA----TCATCA---GGATGCGGCAAAAGA 290
|.|.|||..|| |.|.||| |||.|| .|||||.|||||.|.
BL03890___sac 245 ---ATCTTGACCAA-AAGGAAACGGTTCAGCACAGCGATGCCGCAAAGGG 290
BSNT_05819___ 291 AAAGCTGAATCCCGCTGCGAGATTTGCGAAAACGCTTTCTAATATTTTTG 340
|||..|||||||....|||.||||||||||||||||.||.||||||||.|
BL03890___sac 291 AAAAATGAATCCTTTAGCGCGATTTGCGAAAACGCTGTCAAATATTTTCG 340
BSNT_05819___ 341 TTCCAATCATCCCGGCTATTGTAGCCAGCGGCCTATTAATGGGATTGCTG 390
|.||||||||||||||.|||||.||.|||||..||||||||||..||.||
BL03890___sac 341 TGCCAATCATCCCGGCCATTGTTGCAAGCGGTTTATTAATGGGGCTGTTG 390
BSNT_05819___ 391 GGTATGATCAATGCGTTTCATTGGAT-GAGCAAGGATTCTGCGCTTTTGC 439
||.|||||.||.||.|||||.|||.| ||.| ..|||.|.|||||.|...
BL03890___sac 391 GGAATGATGAAGGCATTTCAGTGGGTCGATC-CTGATGCGGCGCTGTATA 439
BSNT_05819___ 440 AGCTGCTTGATATGTTTTCAAGTGCAGCATTTATTTTCTTGCCGATTCTA 489
|..|||||||||||||.||.||.||.|||||||||.||.|.|||||..|.
BL03890___sac 440 AAATGCTTGATATGTTCTCGAGCGCGGCATTTATTATCCTTCCGATCTTG 489
BSNT_05819___ 490 ATCGGGGTCAGCGCTTCAAAAGAGTTTGGCAGCAATCCATACTTGGGAGC 539
|||||.|||||.|||.|.||||||||||||||||||||.|||.||||.||
BL03890___sac 490 ATCGGTGTCAGTGCTGCGAAAGAGTTTGGCAGCAATCCTTACCTGGGGGC 539
BSNT_05819___ 540 GGTCATCGGGGGAATCATGATTCATCCGA-CTCTTTTAAATCCATGGGGA 588
.||..|.||.|||||..|.|||||.|||| || |.||.|||||.||||||
BL03890___sac 540 TGTACTTGGAGGAATTTTAATTCACCCGAGCT-TGTTCAATCCTTGGGGA 588
BSNT_05819___ 589 TTGGCGGAA--GCGACACCTGATTACATGCATCTTTT-CGGATTTGATAT 635
.|.|| || ||..||||.|||...|||.| ||||| ||||.|..|.||
BL03890___sac 589 CTTGC--AACTGCATCACCGGATGTGATGGA-CTTTTACGGACTCAAAAT 635
BSNT_05819___ 636 CGCGCTTCTCGGCTACCAGGGAACTGTTATCCCTGTCCTGCTTGCGGTGT 685
||.|.|.||.|||||.||.|||||.|||.|.||..|..|||||||.||.|
BL03890___sac 636 CGAGATGCTTGGCTATCAAGGAACCGTTGTTCCAATTTTGCTTGCCGTAT 685
BSNT_05819___ 686 ATGTGATGAGCAAGGTAGAGAAATGGACG--AGAAAAGTGGTTCCACATG 733
||||||||||.||..|.||.||| |.|| ||||.|.|.||||||.|||
BL03890___sac 686 ATGTGATGAGTAAAATCGAAAAA--GGCGTAAGAAGAATCGTTCCAAATG 733
BSNT_05819___ 734 CGGTAGATTTGCTTGTTACACCATTTGTTACTGTAATTGTCACCGGG-TT 782
||.|.|||.|..|.||.|||||.|||||.||..|.||| |||.|||| ||
BL03890___sac 734 CGATCGATCTATTAGTAACACCGTTTGTCACGATTATT-TCAACGGGATT 782
BSNT_05819___ 783 TGTTGCTGTTATCGCGATTGGCCCTCTAGGCAGAGCGCTTGGCTCCGGCA 832
..|||||.||||||||||.||.|||.||||.|||..||||||..|.||.|
BL03890___sac 783 CATTGCTTTTATCGCGATCGGTCCTTTAGGAAGAATGCTTGGTACAGGGA 832
BSNT_05819___ 833 TTACGGTTGCTTTAACTTATGTGTATGACCATGCCGGTTTTGTTGCGGGC 882
|.|||.....||||||.||||||||||||..||||||...||||||.||.
BL03890___sac 833 TCACGAACATTTTAACATATGTGTATGACGTTGCCGGGCCTGTTGCCGGA 882
BSNT_05819___ 883 CTGATTTTCGGGGGCACGTATTCACTCATCGTGCTGACAGGCGTTCATCA 932
||||||||||||||.||.||.||.||.|||||.||.||.||.||.||.||
BL03890___sac 883 CTGATTTTCGGGGGAACATACTCGCTGATCGTTCTAACTGGTGTCCACCA 932
BSNT_05819___ 933 TAGCTTCCATGCGATTGAGGCTGGGCTTATTGCAGATATAGGAAAAAACT 982
.||.|||||||||||||||||.||.|||||.||.|||||.||.|..||||
BL03890___sac 933 CAGTTTCCATGCGATTGAGGCCGGCCTTATCGCTGATATCGGCAGGAACT 982
BSNT_05819___ 983 ACTTGCTGCCGATCTGGTCAATGGCGAATGTCGCACAGGGCGGGGCAGGT 1032
||.||||.|||||||||||.|||.|.||||||||.||.||||||||.||.
BL03890___sac 983 ACCTGCTCCCGATCTGGTCTATGTCCAATGTCGCCCAAGGCGGGGCCGGA 1032
BSNT_05819___ 1033 CTTGCCGTCTTCTTTATGGCGAAAAAG---GCAAAGACAAAAGAAATCGC 1079
||||||||.||||||.|||| |||| |||||.|||||||||||.||
BL03890___sac 1033 CTTGCCGTATTCTTTTTGGC---AAAGCGTGCAAAAACAAAAGAAATTGC 1079
BSNT_05819___ 1080 GCTTCCGGCAGCATTTTCCGCTTTTCTCGGCATTACTGAGCCCGTCATAT 1129
..|.||.||.||.||.||..||||||||||||||||.||.||.||.||.|
BL03890___sac 1080 TTTACCTGCCGCTTTCTCTTCTTTTCTCGGCATTACCGAACCTGTTATTT 1129
BSNT_05819___ 1130 TCGGAGTCAATCTTCGCTACCGAAAACCGTTTATCGCCGCGATGATCGGA 1179
||||.|||||.||.||.|||||....|||||||||||.||.|||..|||.
BL03890___sac 1130 TCGGTGTCAACCTCCGTTACCGCCGGCCGTTTATCGCGGCAATGGCCGGG 1179
BSNT_05819___ 1180 GGCGCATTGGGTGGGGCATATGTCGTCTTTACACATGTAGCTGCAAACGC 1229
||.||..||||.|..|||||.||.|||||||...||||.||.||||||||
BL03890___sac 1180 GGAGCGCTGGGAGCTGCATACGTTGTCTTTATGAATGTTGCAGCAAACGC 1229
BSNT_05819___ 1230 TTACGGGTTAACGGGTATTCCGATGATCGCCATTGCGGCTCCGTTTGGCT 1279
.|||||.||.|||||.|||||||||||.||.||||..||.|||.||||..
BL03890___sac 1230 ATACGGTTTGACGGGAATTCCGATGATTGCGATTGTCGCCCCGCTTGGAA 1279
BSNT_05819___ 1280 TCAGCAACTTGATTCACTATCTGATTGGCATGGCGATTGC-GGCAGTGTC 1328
|..|||||.||||.||||||.|.||.||.|||||||||.| |..|.||||
BL03890___sac 1280 TGGGCAACCTGATCCACTATTTAATCGGAATGGCGATTTCTGTGACTGTC 1329
BSNT_05819___ 1329 AGCGTTCATCGCAGCATTTGTCATGAAG--ATTAATGAGGATGAGGAGAG 1376
||.||.|||.||||.|||.||.| || ||||||||.||.||
BL03890___sac 1330 -GCATTTATCACAGCCTTTATCTT--AGGCATTAATGAAGACGA------ 1370
BSNT_05819___ 1377 GAAAAAATGA 1386
||||||.|||
BL03890___sac 1371 GAAAAAGTGA 1380
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