Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05827 and BL03887
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05827___nfrA.1.5803.seq
# -bsequence dna-align/BL03887___nfrA1.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05827___nfrA-BL03887___nfrA1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05827___nfrA-BL03887___nfrA1.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05827___nfrA
# 2: BL03887___nfrA1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 805
# Identity: 525/805 (65.2%)
# Similarity: 525/805 (65.2%)
# Gaps: 110/805 (13.7%)
# Score: 1633.5
#
#
#=======================================
BSNT_05827___ 1 ATGAATAACACAATCGAAACCATTTTGAATCATCGGTCAATCCGGTCTTT 50
||||||||.||.||.|||||.|||||.|||||.||.||.|||.|||||||
BL03887___nfr 1 ATGAATAAAACGATTGAAACTATTTTAAATCACCGTTCGATCAGGTCTTT 50
BSNT_05827___ 51 TACTGATCAGCTTTTGACAGCTGAAGAAATT-GATACAT--TAGTGAAAA 97
|||.||||.|||..||||.|..|||||..|| | |.| |.|||.|.|
BL03887___nfr 51 TACAGATCGGCTCCTGACCGAAGAAGAGGTTCG---CCTGCTTGTGGAGA 97
BSNT_05827___ 98 GTGCGC-AGGCTGCGTCTACATCCAGCTATGTGCAGGCATATTCGATTAT 146
|.||.| |.|| ||.||.||.||.||||||.|.||.||||||||.||.||
BL03887___nfr 98 GCGCTCAAAGC-GCATCGACGTCAAGCTATATTCAAGCATATTCAATCAT 146
BSNT_05827___ 147 CGGGGTTTCTGATCCTGAGAAAAAACGTGAGCTGTCCGTGC-----TTGC 191
|||.||..|.|||||.||.||.||.||..|||| ||| |.||
BL03887___nfr 147 CGGTGTCACCGATCCGGACAAGAAGCGCAAGCT-----TGCGGAATTGGC 191
BSNT_05827___ 192 TGGGAATCAGCCTTACGTTGAGAAGAACGGACACTTTTTTGTATTTTGTG 241
.|||||.|||||.||.|||||.||.|||||.||..|.|||||||||||.|
BL03887___nfr 192 CGGGAACCAGCCATATGTTGAAAAAAACGGCCATCTGTTTGTATTTTGCG 241
BSNT_05827___ 242 CGGATTTGTACCGCCATCAACAACTGGCTGAGGAAAAA-GGTGAACATAT 290
|.|||.|.|||.|.|||.|..||.|.||| .||||||| ||||.|.||||
BL03887___nfr 242 CAGATCTTTACAGGCATGACAAAATCGCT-CGGAAAAAGGGTGTAGATAT 290
BSNT_05827___ 291 TTCTGAGCTGCTCGAGAA--TACAGAAATGTTTATGGTTAGCTTGATTGA 338
|.| ||||.|||..||| .||.||||..||||||||.|||.|.||.||
BL03887___nfr 291 TAC--AGCTTCTCTTGAAGGGACGGAAACCTTTATGGTCAGCGTCATCGA 338
BSNT_05827___ 339 TGCGGCGCTGGCAGCGCAAAATATGAGCATTGCCGCTGAATCCATGGGGC 388
|||.|||||.||.||.|||||||||...||.||.||.|||||.|||||.|
BL03887___nfr 339 TGCAGCGCTTGCCGCTCAAAATATGTCAATAGCGGCCGAATCAATGGGCC 388
BSNT_05827___ 389 TTGGCATTTGCTATATCGGCGGCATTCGGAATGAACTGGACAAGGTGACA 438
|.|||||.|||||||||||.||.|||||.||..|..||.||.|.||..|.
BL03887___nfr 389 TCGGCATCTGCTATATCGGTGGGATTCGCAACAATTTGAACGAAGTCTCC 438
BSNT_05827___ 439 GAGGTGCTGCAAACGCCTGACCATGTGCTCCCGCTTTTCGGACTGGCAGT 488
|||.|.||..||||.|||||..|.||.||.|||||.|||||.||.|..||
BL03887___nfr 439 GAGCTTCTTGAAACACCTGAATACGTTCTTCCGCTGTTCGGGCTTGTCGT 488
BSNT_05827___ 489 AGGCCATCCTGCGAACCTTTCCGGCAAAAAACCGAGATTGCCAAAGCAGG 538
.|||||.||.||.||||.|||.|.||||||||||.|..|||| |
BL03887___nfr 489 CGGCCAGCCGGCCAACCCTTCGGCCAAAAAACCGCGTCTGCC-------G 531
BSNT_05827___ 539 C-------CGTTTATCATGAGAATACGTATAATGTGAACACAGACGATTT 581
| |.||||||||||.|||...|||.|.| |.||.|| |.
BL03887___nfr 532 CTTGATCACATTTATCATGAAAATGTCTATCAAG------CGGATGA-TG 574
BSNT_05827___ 582 CCGTCATACTATGAATA-----------CGTATGACAAAACCATTTCTGA 620
||| |.|.||||.| |.||||||.||||.|||||..|
BL03887___nfr 575 CCG----AGTTTGAAAAGCATTTGTCCGCATATGACGAAACGATTTCAAA 620
BSNT_05827___ 621 TTACTATAGAGAAAGAACAAACGGGCAGCG---GGAAG--AAACGTGGTC 665
.||.||| |||| |||| |||.| |||| ||||
BL03887___nfr 621 CTATTAT----------CAAA-----AGCGGACGGACGGCAAAC--GGTC 653
BSNT_05827___ 666 CGATCAAAT--ACTGAACTTTATGAAG--------------CAAAA---- 695
.|| ||||| ||.||.| || |||||
BL03887___nfr 654 TGA-CAAATGGACAGACC-------AGATCACCGGCAGCCTCAAAAAGCC 695
BSNT_05827___ 696 GCCGCGTACGTATTTAAATGACTACGTGAAAGAAAAGGGCTTTAATAAAA 745
|||||||.|||||.|.|||||.|.|||.||||.|||.||.||.||.||||
BL03887___nfr 696 GCCGCGTGCGTATATGAATGAATTCGTTAAAGGAAAAGGTTTGAACAAAA 745
BSNT_05827___ 746 ACTAA 750
..|||
BL03887___nfr 746 GGTAA 750
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