Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05837 and BL03871
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:55
# Commandline: needle
# -asequence dna-align/BSNT_05837___qoxA.1.5803.seq
# -bsequence dna-align/BL03871___qoxA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05837___qoxA-BL03871___qoxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05837___qoxA-BL03871___qoxA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05837___qoxA
# 2: BL03871___qoxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 989
# Identity: 740/989 (74.8%)
# Similarity: 740/989 (74.8%)
# Gaps: 61/989 ( 6.2%)
# Score: 2739.5
#
#
#=======================================
BSNT_05837___ 1 TTGTTCAGAGCATTAAAACCGTTGCTTGTATTAGCGCTGTTAACTGTGGT 50
||||||||||||||.|||||..|| |||| ||.|.|||.| |.
BL03871___qox 1 TTGTTCAGAGCATTTAAACCACTG-----ATTA----TGCTGACTCT-GC 40
BSNT_05837___ 51 TTTCGTCC---------TTGGG-GGATGCAG-CAATGCTTCAGTACTAGA 89
||||.||| ||||| ||.||||| |||..| .|.|||.|.||
BL03871___qox 41 TTTCCTCCGTTTTTTTATTGGGCGGCTGCAGTCAAATC-GCGGTATTGGA 89
BSNT_05837___ 90 TCCGAAAGGACCTGTAGCTGAACAGCAAAGTGATTTAATCCTGTTATCTA 139
|||.||||||||.||.|||...||||||||.|||.|.||.||.|||||.|
BL03871___qox 90 TCCTAAAGGACCGGTTGCTTCGCAGCAAAGAGATCTTATTCTATTATCGA 139
BSNT_05837___ 140 TCGGATTTATGCTGTTTATCGTCGGGGTCGTCTTTGTTCTATTTACCATT 189
|.||||||||||||||||||||.|.||||||.|||||.||.|||||..|.
BL03871___qox 140 TTGGATTTATGCTGTTTATCGTAGCGGTCGTATTTGTCCTTTTTACTGTG 189
BSNT_05837___ 190 ATTTTAGTAAAATACCGCGACCGTAAAGGC--AAAGATAATGGAT---CT 234
||..|.||.||||||||.||.|||||||.| |||| | ||
BL03871___qox 190 ATGATTGTGAAATACCGTGAGCGTAAAGACAGAAAG--------TCTCCT 231
BSNT_05837___ 235 TATAACCCAGAAATTCACGGTAACACGTTTTTAGAAGTAGTCTGGACAGT 284
||.|.|||.|||.|..|.||.||.||.|||||||||.|.|||||||||||
BL03871___qox 232 TACAGCCCGGAAGTAGAAGGCAATACATTTTTAGAAATCGTCTGGACAGT 281
BSNT_05837___ 285 GATCCCAATTTTAATCGTCATTGCACTTTCTGTGCCAACAGTACAGACGA 334
|.|.||.||||||||.||.|||||.||.||.|||||.|||||.||.||.|
BL03871___qox 282 GGTTCCGATTTTAATTGTTATTGCGCTGTCAGTGCCGACAGTTCAAACAA 331
BSNT_05837___ 335 TATATTCGTTAGAAAAAGCTCCTGAAGCAACAAAAGACAAAGAGCCTCTT 384
|.|||||..|||||.|.|||||..|||||.||||.|||||.||.|||.|.
BL03871___qox 332 TTTATTCTCTAGAAGAGGCTCCAAAAGCATCAAAGGACAAGGAACCTTTG 381
BSNT_05837___ 385 GTTGTTTATGCTACTTCGGTAGACTGGAAATGGGTATTCAGCTACCCTGA 434
||.||.||||||||.||.||.||.||||||||||||||||||||.||.||
BL03871___qox 382 GTCGTATATGCTACATCTGTCGATTGGAAATGGGTATTCAGCTATCCGGA 431
BSNT_05837___ 435 ACAGGATATTGAAACGGTCAACTACTTAAACATTCCTGTC-GACCGCCCG 483
|||||||||.||||||||||||||.||.||.| |||.|.| |||.|.|||
BL03871___qox 432 ACAGGATATCGAAACGGTCAACTATTTGAATA-TCCCGACAGACAGACCG 480
BSNT_05837___ 484 ATCTTGTTCAAAATCTCATCTGCAGATTCAATGGCTTCGCTATGGATTCC 533
||||||||.||||||||||||||.||.||.|||||.||.||.||||||||
BL03871___qox 481 ATCTTGTTTAAAATCTCATCTGCCGACTCTATGGCATCTCTGTGGATTCC 530
BSNT_05837___ 534 TCAGCTTGGAGGACAAAAATATGCGATGGCAGGAATGCTGATGGATCAAT 583
.||||||||.||.||||||||.||.|||.|.||||||...|||||.||||
BL03871___qox 531 GCAGCTTGGCGGGCAAAAATACGCCATGTCCGGAATGGAAATGGAGCAAT 580
BSNT_05837___ 584 ACTTACAGGCTGACAAAGTGGGTACTTACGAAGGCCGCAACGCGAACTTC 633
|.||||||||.|||.|.|.|||||||||..|||||||.||.||.||||||
BL03871___qox 581 ATTTACAGGCAGACCATGAGGGTACTTATAAAGGCCGAAATGCAAACTTC 630
BSNT_05837___ 634 ACAGGTGAACACTTTGCAGACCAAGAGTTTGATGTGAATGCAGTCACAGA 683
|||||.|||...||||||||.|||.|||||.||||.|||||.||..|.||
BL03871___qox 631 ACAGGCGAAGGTTTTGCAGAACAAAAGTTTAATGTCAATGCGGTATCTGA 680
BSNT_05837___ 684 AA--AAGACTTTAACAGCTGGGTGAAAAAGACTCAGAACGAGGCTCCTAA 731
|| ||| |||||...|||||||||.||.||.|||||.||.|||||.||
BL03871___qox 681 AAGCAAG--TTTAATGACTGGGTGAAGAAAACGCAGAAAGAAGCTCCCAA 728
BSNT_05837___ 732 GCTGACAAAAGAGAAGTATGATGAATTGATGCTTCCTGAAAATGTGGACG 781
||||||.|||....||||.||||||.|||||||||||.|..|||.|||||
BL03871___qox 729 GCTGACGAAAACCCAGTACGATGAACTGATGCTTCCTCAGCATGCGGACG 778
BSNT_05837___ 782 AATTAACGTTCTCTTCTACTCACTTGAAATACGTTGATCACGGACAAGAC 831
||.|.||||||||.|||||.|||.||||.||||||.||||||||.|.||.
BL03871___qox 779 AAATGACGTTCTCATCTACACACCTGAAGTACGTTAATCACGGAAATGAT 828
BSNT_05837___ 832 GCTGAGTACGCGATGGAGGCGCGCAAACGCCTTGGCTATCAAGCCGTT-T 880
||.||.|||||.||..|.||||||.||.|.||.|||||| ||.||||| |
BL03871___qox 829 GCGGAATACGCCATTAAAGCGCGCGAAAGACTGGGCTAT-AAACCGTTGT 877
BSNT_05837___ 881 CACCGCACTCTAAAACAGATCCGTTTGAAAACGTAAAGAAAAACGAATTT 930
|.||||||||||||.||||||||||||||||||||||||.||||.||..|
BL03871___qox 878 CTCCGCACTCTAAATCAGATCCGTTTGAAAACGTAAAGACAAACAAAGAT 927
BSNT_05837___ 931 ----AAGAAGTCTGATGATACAGA--------AGAATGA 957
||.|| |||||.||...||| ||
BL03871___qox 928 CAAAAACAA-TCTGAAGACCAAGATTCTCACTAG----- 960
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