Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05948 and BL03870
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence dna-align/BSNT_05948___galE.1.5803.seq
# -bsequence dna-align/BL03870___galE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05948___galE-BL03870___galE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05948___galE-BL03870___galE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05948___galE
# 2: BL03870___galE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1170
# Identity: 638/1170 (54.5%)
# Similarity: 638/1170 (54.5%)
# Gaps: 330/1170 (28.2%)
# Score: 1452.5
#
#
#=======================================
BSNT_05948___ 1 ATGGCAATACTTGTTACT----GGTGGTGCCGGGTACATTGGCAGCCACA 46
.|||||||| |||.| ||.||.||.||.||.|||||.|||||..
BL03870___gal 1 TTGGCAATA----TTAGTATGCGGAGGGGCGGGCTATATTGGAAGCCATG 46
BSNT_05948___ 47 CATGT-GTTGAATTATTGAACAGCGGCTACG-AGATTGTTG---TTCTTG 91
| ||| |..|||.|.|| .|||.||.|.| ||| |||.| ||.|||
BL03870___gal 47 C-TGTAGCGGAACTGTT---AAGCCGCAATGAAGA-TGTCGTAATTATTG 91
BSNT_05948___ 92 ATAATCTGTCCAACAGTTC-GGCTGAGGC-GCTGAACCGTGTCAA--GGA 137
||||.||| |.|||.|..| .|..||||| ||| |.|| |||
BL03870___gal 92 ATAACCTG-CAAACTGGACATGAAGAGGCGGCT--------TTAAAGGGA 132
BSNT_05948___ 138 GATTACGGGAAAAGATTTAACGTTCTACGAAGCGGATTTATTGGA----- 182
|.|| |.||||| ||.||||
BL03870___gal 133 GCTT----------------CTTTCTA-----------TAATGGAGATCT 155
BSNT_05948___ 183 ---CCGGGAAGCAGT----AGATGCGGTTTTTGCTGAAAATGAAATCGAA 225
|...||||||.| ||| ..|||.|||...|||||.||.||.||.
BL03870___gal 156 GCGCGATGAAGCATTTCTAAGA-AAGGTGTTTCAGGAAAACGACATTGAG 204
BSNT_05948___ 226 GCTGTGATTCATTTTGCTG--GGTTAAAAGCAGTCGGTGAATCTGTTGC- 272
|||||.||.|||||.||.| |.||.|..| ||.||.|||...||..|
BL03870___gal 205 GCTGTCATGCATTTCGCGGCCGATTCATTG--GTTGGAGAAAGCGTAACA 252
BSNT_05948___ 273 GATTCCGCTCAAATATTATCATAACAATCTAACAGGAACGTTTA------ 316
|| |||.||||||||||||.|.||| ||||||||
BL03870___gal 253 GA-TCCTCTCAAATATTATGACAAC-----------AACGTTTACGGAGC 290
BSNT_05948___ 317 TTTTATG--TG----AGGCCATGGAGAAATACGGCGTCAAGAAAATTGTG 360
|.|| || || |||.||||.|..|.|.||..||.|||.|||||||.
BL03870___gal 291 TGTT-TGCCTGTTAAAGGTCATGAAAGAGTTCGATGTGAAGCAAATTGTT 339
BSNT_05948___ 361 TTCAGTTCATCCGCGACAGTATACGGCGTTCCGGAAACATC----ACCGA 406
|||...|||.||||..||..||||||.|..|||| ||| .||||
BL03870___gal 340 TTCTCATCAACCGCTGCAACATACGGAGAACCGG----ATCGGGTGCCGA 385
BSNT_05948___ 407 TTACGGA---GGACTTTCCATTAGGCG----CGACAAATCCTTATGGGCA 449
|||.||| .|| ||| |.|| |||||||.||.||.|||.|
BL03870___gal 386 TTATGGAAACAGA---TCC----GACGGATCCGACAAACCCGTACGGGGA 428
BSNT_05948___ 450 GACGAAGCTCATGC--TTGAACAAATATTGCGTGACTT-----------G 486
.|||||||| ||| |||||.||| ||| |||..| |
BL03870___gal 429 AACGAAGCT--TGCAATTGAAAAAA---TGC-TGAAGTGGTCTGAAAAGG 472
BSNT_05948___ 487 CATAC---AGCCGACAATGAGTGGAGCGTTG-CGTTGCTTCGTTACTTTA 532
||||| |.|||.|| || || |.|||||.|||||||
BL03870___gal 473 CATACGGAATCCGTCA-------------TGTCG-TCCTTCGCTACTTTA 508
BSNT_05948___ 533 ACCCGTT--CGGCGCGCATCCTAG-CGGACGGATCGGTGAAGAC--CCGA 577
| .||| |||.|||||| .||| |||...||||||.||.||| ||..
BL03870___gal 509 A--TGTTGCCGGGGCGCAT-GTAGACGGCTTGATCGGCGAGGACCACCAG 555
BSNT_05948___ 578 ACGGAATCCCAAATAACCTTATGCCGTATGTGGCA-----CAGGTAGCTG 622
.|.|||.|.| ||||.||.||| || || ||.||.||..
BL03870___gal 556 CCTGAAACGC-----ACCTGATTCCG-AT----CATTCTTCAAGTCGCGC 595
BSNT_05948___ 623 TCGGGAAGCTCGAGCA--ATTAAGCGTATTCGGAAATGACTATCCGACAA 670
|.||.||.|..|| || ||||.| .|.|||||..|.|||||||||||..
BL03870___gal 596 TAGGCAAACGGGA-CAAGATTATG-ATTTTCGGCGACGACTATCCGACTC 643
BSNT_05948___ 671 AAGACGGGACAGGCGTACGCGATTATATTCACGTCGTTGATCT------- 713
..||.||.||..||.|..|.||.||.||.||.||..|.|||||
BL03870___gal 644 CGGATGGCACGTGCATCAGAGACTACATCCATGTGATGGATCTGGTCGAC 693
BSNT_05948___ 714 -CGCAGA--------------AGGCCACGTCAAGGCGCTGGAAAAAGTAT 748
||||.| ||||..||..|.||| |||.||||
BL03870___gal 694 GCGCATATTCTCGCTGTCGAGAGGCTTCGAAACGGC---GGAGAAAG--- 737
BSNT_05948___ 749 TGAACTCTACAGGAGCCGATGCATACAACCTTGGAACAGGAACAGGCTAC 798
||..|.||||||.||.||||..|||||.||||.|
BL03870___gal 738 ----------------CGCCGTATACAATCTCGGAAACGGAACGGGCTTC 771
BSNT_05948___ 799 AGCGTGCTTGAAATGGTCA---AAGCCTTTGAA---------AAAGTGTC 836
|.| |||| |||.|.||||| ||||||.|
BL03870___gal 772 --------TCA----GTCAAAGAAGTCGTTGAAACTGCCCGGAAAGTGAC 809
BSNT_05948___ 837 AGG--GAAAGAGGTTCCG-TACCG-----TTTTGCGGACCGCCGCCCGGG 878
||| | |||| ||||| ..||||.||.||||||.|.||
BL03870___gal 810 AGGCTG--------TCCGATACCGGCGGAGGTTGCAGAGCGCCGCGCAGG 851
BSNT_05948___ 879 AGACATCGCCACATGCTTTGCAGATC----CTGC-GAAAGCCAAGCGG-- 921
|||| .||.|||| ||.|||| ||.| |||| ||||||
BL03870___gal 852 AGAC-CCGGCACA------GCTGATCGCCTCTTCGGAAA---AAGCGGTG 891
BSNT_05948___ 922 ---GATCTGGGCTGGGAAGCGAA--ACG-CGGCCTTGAGGAAATGTGCGC 965
||.||.||.|||.|..|||| ||| ||..|| ||||| ||.
BL03870___gal 892 AAAGAGCTTGGATGGCAGCCGAAGTACGCCGAACT---GGAAA----CGA 934
BSNT_05948___ 966 TGATTCCTGGAGA-----TGGCAGTCTTCTA------ATGTGAATGGGTA 1004
|.||| ||.| |||.|||..|.|| ||..|||.||.||
BL03870___gal 935 TCATT----GACAGCGCGTGGAAGTGGTTTAAAGCACATCCGAACGGCTA 980
BSNT_05948___ 1005 T--AAG--AGTGCGGAATAA 1020
| ||| ||
BL03870___gal 981 TCAAAGCTAG---------- 990
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