Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02906 and BL03869
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:37
# Commandline: needle
# -asequence dna-align/BSNT_02906___xylB.1.5803.seq
# -bsequence dna-align/BL03869___xylB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02906___xylB-BL03869___xylB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02906___xylB-BL03869___xylB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02906___xylB
# 2: BL03869___xylB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1652
# Identity: 985/1652 (59.6%)
# Similarity: 985/1652 (59.6%)
# Gaps: 304/1652 (18.4%)
# Score: 2532.5
#
#
#=======================================
BSNT_02906___ 1 ATGAAGTATGTCATTGGAATAGATCTTGGAACGAGTGCTGTTAAAACCAT 50
.||.|.||.||.||.||..|.|||||.||.||.||..|.|||||||.|||
BL03869___xyl 1 GTGGAATACGTAATCGGGGTCGATCTCGGCACCAGCACGGTTAAAATCAT 50
BSNT_02906___ 51 TTTAGTTAACCAAAACGGCAAGGTTTGTGCAGAAACG--TCCAAAAGGTA 98
..|.||.||.| |.|||..||...|||||.|..|.| ||||||
BL03869___xyl 51 CCTTGTCAATC--AGCGGGGAGAGCTGTGCGGCGAGGTCTCCAAA----- 93
BSNT_02906___ 99 TCCGCTTATCCA----AGAG---AAGGCGGGATATAGTGAGCAAAATCCT 141
||| ||.|||| .||| .|..|.||.|||...||.||..||||.
BL03869___xyl 94 -CCG-TTTTCCATCATTGAGCCCCATTCCGGTTATTCCGAACAGGATCCC 141
BSNT_02906___ 142 GAAGACTGGGTGCAGCAAACAATTGAAG-CATT--GGCTGAATTGG---- 184
|.|||.||||.|.|..||||.|..|||| |||| | |||||||
BL03869___xyl 142 GCAGAATGGGCGGACAAAACGAAGGAAGCCATTAAG---GAATTGGTCGG 188
BSNT_02906___ 185 ---TTTCTATATCC---AATGTTCAAGCCAAGGAT-----ATTGACGGGA 223
|||| || || |||.|| |||.|.|||.
BL03869___xyl 189 GCATTTC-----CCGGGAA----------AAGCATCTCAGATTAAAGGGG 223
BSNT_02906___ 224 TAAGCTATTCGGGACAAATGCATGGATTAGTACTGCTT-----GATAAAG 268
|.||||.|||.|||||.|||||||||||.||||| || |..||||
BL03869___xyl 224 TCAGCTTTTCCGGACAGATGCATGGATTGGTACT--TTTAAACGGCAAAG 271
BSNT_02906___ 269 ATTGTCAGGTGTTACGTAATGCAATTCTTTGGAATGATACCAGAACAACG 318
|..||||.||.||.||.||.||.||.|||||.|||||..|.|||||.
BL03869___xyl 272 ---GAGAGGTTTTGCGAAACGCGATCCTGTGGAACGATACACGGACAACC 318
BSNT_02906___ 319 CCTCAATG-----TATAAGGATGACCGAGAAATTTGG---CGATCATCTT 360
...||||| | |||.|.|||.|||.|.|| .||.|..||.
BL03869___xyl 319 GAACAATGCCGGCT-----GATTAACGACAAAATCGGAAAGGAGCGCCTG 363
BSNT_02906___ 361 CTTGACATCAC-AAAAAACCGTGTTTTAGAAGGGTTTACATTACCTAAAA 409
||.||.|||.| |||||.||| |...|.|||||.|||||..|.||.||..
BL03869___xyl 364 CTCGAGATCGCGAAAAATCCG-GCGCTCGAAGGTTTTACCCTTCCGAAGC 412
BSNT_02906___ 410 TGTTATGGGTGAAGGAACATGAACCTGAACTTTTTAAAAAAACTGCTGTG 459
|.|||||||||||.|||.|||||...||.||.|||.||||..|.||.||.
BL03869___xyl 413 TTTTATGGGTGAAAGAATATGAAAAAGAGCTGTTTGAAAAGGCGGCCGTT 462
BSNT_02906___ 460 TTTTTGCTTCCGAAAGACTATGTGAGATTCCGTATGACCGGTGC--CATT 507
||||||||.||||||||||||||.||.|.|...|||| |||.|| | ||
BL03869___xyl 463 TTTTTGCTGCCGAAAGACTATGTCAGGTACACCATGA-CGGGGCGTC-TT 510
BSNT_02906___ 508 CACACGGAATACTCCGATGCAGCAGGAACTTTACTTTTACATATTACTCG 557
||||..|||||.||.|||||.||.|||||..|.||..||.||.|
BL03869___xyl 511 CACAGCGAATATTCAGATGCGGCCGGAACGCTCCTGCTAGATGT------ 554
BSNT_02906___ 558 CAAGGAG----------TGGAGCAATGATATTTGCAATCAAA--TTGGTA 595
||| ||||||...||.||.|||| .||| |.||.|
BL03869___xyl 555 ----GAGACATCAAACATGGAGCGGGGAAATCTGCA--GAAAGCTCGGCA 598
BSNT_02906___ 596 TTTCTGCAGATATTTGTCC-----TCCG--CTTG-TTGAATCTCATGATT 637
|..|.| .|||| |||| .||| |||||.|....|.||
BL03869___xyl 599 TCCCGG--------AGTCCTTATGTCCGGATTTGATTGAACCGGGCGCTT 640
BSNT_02906___ 638 GTGTAGGGTCGCTGCTT----CCGCACGTTGCCGCCAAGACCGGACTAT- 682
||||.| ||.||.| |||.|..|.||.|||.|.|||||.||.|
BL03869___xyl 641 GTGTCG----GCGGCCTCAGACCGGAATTCGCGGCCGAAACCGGGCTGTC 686
BSNT_02906___ 683 ---TAGAAAAAACAAAAGTGTACGCTGGGGGAGCAGATAATGCTTGCGGC 729
| .||...||.||||..||.||.||.||.||||||||.||||||
BL03869___xyl 687 TCCT----GAAGTCAAGGTGTTTGCCGGCGGCGCTGATAATGCATGCGGC 732
BSNT_02906___ 730 GCTATTGGAGCAGGTATCCTTTCTTCCGGAAAAA------------CTTT 767
|||.|.||.||.||||| ||| |||| |||
BL03869___xyl 733 GCTGTCGGCGCCGGTAT--TTT--------AAAAGAAGGAACCGCCCTT- 771
BSNT_02906___ 768 ATGCAGTATTGGGACCTCAGGGGTCATACTTTCCTACGAAGAAGAAAAA- 816
|||||.||.||.|||||.|||||..|.||..|.||.||| ..|||
BL03869___xyl 772 -TGCAGCATAGGCACCTCGGGGGTTGTTCTCACATATGAA----TCAAAC 816
BSNT_02906___ 817 ---GA--AAGAGACTTTAAAGGCAAAGTCCACTTTTTTAATCATGGAAAA 861
|| ||||| |||||.|||||..|.||.|||.|.||.||||
BL03869___xyl 817 CGTGATCAAGAG--TTTAATGGCAATATTCATTTTCTGAACCATG----- 859
BSNT_02906___ 862 AAG-----GATTCTTTTTATACGATGGGCGTCACGCTCGCTGCAGGATAC 906
.|| |||.|.||||||.|||||||.||.|||||..||||||||..|
BL03869___xyl 860 CAGCCCCCGATGCGTTTTATTCGATGGGAGTGACGCTTTCTGCAGGACGC 909
BSNT_02906___ 907 AGCTTGGACTGGTTTAAAAGA---ACGTTTGCAC---CAAACGAATCGTT 950
|||||...||||||| ||||| | ||||| | ||..|| ||.||
BL03869___xyl 910 AGCTTCAGCTGGTTT-AAAGATGTA--TTTGC-CGGGCAGGCG--TCATT 953
BSNT_02906___ 951 TGAGCAATTATTGCAGGGGGTGGAA-----GCTATTCCGAT--AGGAGCC 993
|||..|||||.| |||.| | ||.|||||..| .||.|||
BL03869___xyl 954 TGACGAATTAAT-CAGCG------ATATTGGCCATTCCCGTCCCGGGGCC 996
BSNT_02906___ 994 AATGGACTGCTATACACTCCTTATTTGGTTGGTGAAAGAACGCCGCATGC 1043
...||||||||.|..||.|||||.|||...||.||.|||||.||.|||||
BL03869___xyl 997 GGGGGACTGCTGTTTACCCCTTACTTGTCAGGGGAGAGAACTCCTCATGC 1046
BSNT_02906___ 1044 TGATTCTTCTATTCGGGGAAGCTTGATCGGAATGGATGGAGCCCACAATA 1093
.||..|...||||||.|..|||||.|||||.||||| .|||.||| |||
BL03869___xyl 1047 CGACGCAGATATTCGCGCCAGCTTCATCGGGATGGA--CAGCGCAC-ATA 1093
BSNT_02906___ 1094 ---GAAAGCACTTTTTGAGGGCAATAATGGAAGGTATCACATTCTCTTTA 1140
|...|.|||||.|.||.||..|.||.|||||.||.||||||||..|.
BL03869___xyl 1094 CACGGGCGGACTTTGTCAGAGCCGTTATTGAAGGCATTACATTCTCCCTT 1143
BSNT_02906___ 1141 CATGAATCAATTGAGCTATTCCGCGAAGCGGGAAA----ATCAGTTCATA 1186
||||||...|||||.|.||||||.|..|.|||||| |||||
BL03869___xyl 1144 CATGAAAGCATTGAACAATTCCGTGCCGGGGGAAAAGACATCAG------ 1187
BSNT_02906___ 1187 C--TGTTGTTTCTATTGGTGGGGGAGCTAAAAATGATACGTGGCTGCAAA 1234
| |||..||||.||.||.||.||.||.||||...||...||||||||||
BL03869___xyl 1188 CCGTGTGATTTCAATCGGAGGAGGCGCCAAAAGCAATCAATGGCTGCAAA 1237
BSNT_02906___ 1235 TGCAAGCTGATATTTTCAA-TACGAGGGTAATTAAGTTAGA-----AAAT 1278
|.||.||.|||||.||||| ..||| .||.| |.||| ||..
BL03869___xyl 1238 TCCAGGCGGATATCTTCAACGCCGA----CATCA--TCAGACTGACAAGC 1281
BSNT_02906___ 1279 GAACAAGGGCCAGCTAT-GGGGGCTGCAATGCTGGCTGCCTTTGGAAGCG 1327
|||||.|||||.|| || .||.||.||.|||.|.||.|||.|.||..|||
BL03869___xyl 1282 GAACAGGGGCCGGC-ATACGGTGCAGCCATGATCGCGGCCGTCGGGTGCG 1330
BSNT_02906___ 1328 GATGGTTTGAATCCCTTGAAGAATGTGCAGAGCAGTTCATTCGTGAGGCT 1377
|.||||||...||.|||||.|..||||||||.|..|||.|||
BL03869___xyl 1331 GCTGGTTTCCGTCGCTTGAGGCTTGTGCAGACCGATTCGTTC-------- 1372
BSNT_02906___ 1378 GCTGCATTTTATCCAAAGGCGCAAAA--TGTTC----------------- 1408
|.|| ||||| ||| |.|||
BL03869___xyl 1373 --------TCAT-CAAAG-----AAACCTTTTCGCCCCGCCGTGAATACA 1408
BSNT_02906___ 1409 ---AAAAATATAAAACACTATTTGATTTGTATA-AGAACATTTATAC--T 1452
.|.||||..||.|.||.|||.|..|.||.| || ||.|.||| .
BL03869___xyl 1409 GCAGACAATACGAAGCTCTCTTTCAAATTTACAGAG---ATGTCTACCGG 1455
BSNT_02906___ 1453 CACAC--AAAGGATCTCAATCAAGC--TTTGAAGAGCTTTCGAAAAAACT 1498
||||| |||.| ||.|| |.||| .|.|.| ||||||||..|| |
BL03869___xyl 1456 CACACGAAAACG--CTGAA-CGAGCGGCTGGCA-AGCTTTCGGGAA---T 1498
BSNT_02906___ 1499 AA 1500
||
BL03869___xyl 1499 AA 1500
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