Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02904 and BL03867
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:37
# Commandline: needle
# -asequence dna-align/BSNT_02904___xylA.1.5803.seq
# -bsequence dna-align/BL03867___xylA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02904___xylA-BL03867___xylA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02904___xylA-BL03867___xylA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02904___xylA
# 2: BL03867___xylA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1477
# Identity: 900/1477 (60.9%)
# Similarity: 900/1477 (60.9%)
# Gaps: 269/1477 (18.2%)
# Score: 2697.5
#
#
#=======================================
BSNT_02904___ 1 ATGGCTCAATCTCATTCCAGTTCAATTAACTATTTTGGA---AGCGCAAA 47
|| ||| ||||.|| |.||.||
BL03867___xyl 1 -------------AT----GTT----------TTTTAGAAATATCGGAA- 22
BSNT_02904___ 48 CAAAGTGGTT---TACGAAGGGAAAGATTCGACTAATCCTTTAGCATTTA 94
||.|| ||.||||||...||||||...|||||||..|||||||
BL03867___xyl 23 -----TGATTGAGTATGAAGGGGCCGATTCGGAAAATCCTTACGCATTTA 67
BSNT_02904___ 95 AATATTATAATCCTCAAGAAGTAATCGGCGGAAAAACGATGAAAGAGCAT 144
|||||||.||.|||.|.|||.|..|||||||.|||||||||||.||.||.
BL03867___xyl 68 AATATTACAACCCTGATGAATTTGTCGGCGGCAAAACGATGAAGGAACAC 117
BSNT_02904___ 145 TTGCGATTTTCTATTGCCTATTGGCATACATTTACTGCTGATGGTACGGA 194
.|.||.||..||.||||.|||||||||||.|||..|||.||.||.|..||
BL03867___xyl 118 CTTCGCTTCGCTGTTGCGTATTGGCATACCTTTGATGCGGACGGGAAAGA 167
BSNT_02904___ 195 CGTTTTTGGATCAGCTACGATGCAAAGACCATG----------GGATC-- 232
|..|||.|| |||.| .|||.||| |||.|
BL03867___xyl 168 CCCTTTCGG--------CGACG---GGACGATGTTCCGGGCGTGGAACCG 206
BSNT_02904___ 233 ACTATAAAGGCA-------TGGATCTAGCGAAGATGAGAGTAGAAGCAGC 275
.|| |.|| |||||..||||||....||.|..|||||.||
BL03867___xyl 207 GCT-----GACACATCCTTTGGATAAAGCGAAAGCCAGGGCGGAAGCGGC 251
BSNT_02904___ 276 ATTTGAGATGTTTGAAATACTAG--ATGCACCATTCTTTGCTTTTCATGA 323
.|||||..|.|||||||..||.| .|||.|.||| |.|| |||||||||
BL03867___xyl 252 TTTTGAATTTTTTGAAAAGCTCGGCGTGCCCTATT-TCTG-TTTTCATGA 299
BSNT_02904___ 324 CCGGGATATTGCACCAGAAGGCAGTACGCTAAAAGAG--ACAAACC---A 368
....||||||| .||.|.||.||| |||...| |
BL03867___xyl 300 TGTTGATATTG--------------TCGATGAAGGAGCAACATTGCGTGA 335
BSNT_02904___ 369 AA---------ATTTAGAT---ATGATCGTGGGCATGATT---AAAGATT 403
|| ||||.||| ||| |||| |.| || |||||..
BL03867___xyl 336 AACTTTCACGTATTTGGATCAAATG-TCGT---CTT--TTCTCAAAGAAA 379
BSNT_02904___ 404 ACAT-GAGAAATAGCGGCGTTAAGCTATTATGGAATACCGCAAACATGTT 452
..|| ||||.| |||...|||.||||..|.||||||||.||.||.|||||
BL03867___xyl 380 TGATGGAGACA-AGCCATGTTCAGCTGCTTTGGAATACAGCCAATATGTT 428
BSNT_02904___ 453 TACGAATCCCCGTTTCGTCCATGGTGCCGCGACTTCTTGCAATGCAGATG 502
||||.||||..|.|..|||||.||.|||||.|||||||||||||||||.|
BL03867___xyl 429 TACGCATCCGAGATATGTCCACGGGGCCGCAACTTCTTGCAATGCAGACG 478
BSNT_02904___ 503 TGTTTGCGTATGCTGCAGCACAAGTGAAAAAAGGGTTAGAAACAGCAAAA 552
|.|.|||.|||||.||.|||.|||||||||||||..|.||.|..||.|||
BL03867___xyl 479 TCTATGCCTATGCAGCTGCAAAAGTGAAAAAAGGCCTGGACATCGCCAAA 528
BSNT_02904___ 553 GAGCTTGGCGCTGAGAACTATGTATTTTGGGGCGGCCGTGAAGGATATGA 602
||||||||.||.||.||||||||.||.||||||||..|.|||||.|||||
BL03867___xyl 529 GAGCTTGGAGCGGAAAACTATGTGTTCTGGGGCGGAAGAGAAGGTTATGA 578
BSNT_02904___ 603 AACATTGTTAAATACCGATTTAAAATTTGAGCTTGATAATTTGGCTAGA- 651
|||||||.|.|||||.|||.|.||..|||||||.||.||.|||.||..|
BL03867___xyl 579 AACATTGCTGAATACAGATATGAAGCTTGAGCTCGAAAACTTGTCTTCAT 628
BSNT_02904___ 652 TTTATGCATATGGCAGTGGATTATGCGAAGGAAATCGGGT---ACACAGG 698
|||||..| ||||||||.||.||||||...||||||||.| || ||
BL03867___xyl 629 TTTATAGA-ATGGCAGTTGAGTATGCGCGTGAAATCGGTTTTGAC---GG 674
BSNT_02904___ 699 GCAGTTTTTGATTGAGCCAAAACCAAAAGAGCCGACCACCCATCAATACG 748
.||.|||||.||.|||||.||.||.||.||||||||.|..||.|||||||
BL03867___xyl 675 CCAATTTTTAATCGAGCCGAAGCCGAAGGAGCCGACGAAGCACCAATACG 724
BSNT_02904___ 749 ATACAGATGCAGCAACAACCATTGCCTTTTTGAAGCAA--TATGGCTTAG 796
||...||||||||.|||||.||.||.||||| ||.|| ||.||.|||.
BL03867___xyl 725 ATTTTGATGCAGCCACAACGATCGCTTTTTT--AGAAACTTACGGTTTAA 772
BSNT_02904___ 797 ACAATCATTTTAAATTAAATCTTGAAGCCAATCATGCCACATTAGCCGGG 846
|..|.|||||||||.|.||||||||.||.||.|||||.|||||.||||||
BL03867___xyl 773 AAGACCATTTTAAACTTAATCTTGAGGCGAACCATGCGACATTGGCCGGG 822
BSNT_02904___ 847 CATACATTCGAACATGAATTACGCATGGCAAGAGTACATGGTCTGCTTGG 896
||||||||.||.||||||.||.|..||||.....|.||.|.|.||||.||
BL03867___xyl 823 CATACATTTGAGCATGAACTAAGGGTGGCTGCCTTGCACGATATGCTGGG 872
BSNT_02904___ 897 CTCTGTTGACGCAAACCAGGGTCATCCTCTTTTAGGCTGGGACACGGATG 946
.||..||||.||.||||||||..||...||.||.||||||||.||.||||
BL03867___xyl 873 TTCCATTGATGCCAACCAGGGCGATTTGCTCTTGGGCTGGGATACCGATG 922
BSNT_02904___ 947 AATTTCCGACGGATTTATATTCTACGACATTAGCAATGTACGAAATCCTG 996
|.||||||||.|||.|.||||||.||....|.||.|||||.|||||..||
BL03867___xyl 923 AGTTTCCGACCGATCTGTATTCTGCGGTTCTGGCGATGTATGAAATTTTG 972
BSNT_02904___ 997 CAAAATGGCGGCCTAGGAAGCGGCGGATTAAACTTTGATGCGAAGGTCAG 1046
.||...|||||..|...||.||||||..|.|||||.|||||.||.||.||
BL03867___xyl 973 AAAGCAGGCGGGTTTAAAACCGGCGGCATCAACTTCGATGCTAAAGTAAG 1022
BSNT_02904___ 1047 AAGATCTTCTTTTGAGCCTGATGA--TCTAATAT-ATGCCCATATTGCAG 1093
..|..|.||.|||| |.||||| .||..|.| |.||.|||||.||||
BL03867___xyl 1023 GCGCCCGTCATTTG---CCGATGAGGACTTGTTTCACGCTCATATCGCAG 1069
BSNT_02904___ 1094 GGATGGATGCATTTGCAAGAGGATTGAAAGTTGCCCACAAATTAATCGAA 1143
|.||||||.|.|.||||...||.||||||||.|||..|
BL03867___xyl 1070 GAATGGATACGTATGCAGTCGGCTTGAAAGTCGCCTCC------------ 1107
BSNT_02904___ 1144 GATCGTGTGTTTGAAGAT---------------GTGATTCAACATCGTTA 1178
|||.||.|||||||| ||.||..||.|.|||||
BL03867___xyl 1108 ---CGTCTGCTTGAAGATAAAGCGCTCGATCAGGTTATCGAAGAACGTTA 1154
BSNT_02904___ 1179 CCGCAGCTTTACTGAAGGGATTGGTCTTGAAATTATAGAAGG-------- 1220
....||||.|||..||||.||.||.||||||||.|.||||||
BL03867___xyl 1155 TGAGAGCTATACGAAAGGCATCGGGCTTGAAATCAAAGAAGGCCGCACCG 1204
BSNT_02904___ 1221 ------AAGAGCTAATTTTC-------ACACACTTGAGCAATATGCGCTA 1257
||.||| || ||.|.||||| |
BL03867___xyl 1205 ATCTGAAAAAGC------TCGCCGCTTACGCTCTTGA------------A 1236
BSNT_02904___ 1258 A---ATCATAAATTAATTAAAAACGAATCTGGAAGACAGGAGAA--ATTA 1302
| |.||| |||.||||..|.||.||..|.|| |||| ..|.
BL03867___xyl 1237 AACGACCAT------ATTGAAAATCAGTCAGGCCGCCA--AGAACGGCTG 1278
BSNT_02904___ 1303 AAAGCGA---------------TATTGAAC-------------------C 1318
||.|||| |||||||| |
BL03867___xyl 1279 AAGGCGACCGTTAACCGTTACTTATTGAACGCTTTGCGCGAAGCGCCGGC 1328
BSNT_02904___ 1319 A-------ATACATTTTAGAAGTATAA 1338
| |.|||...|||
BL03867___xyl 1329 AGGAAAGGAGACACACTAG-------- 1347
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