Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02904 and BL03867

See Amino acid alignment / Visit BSNT_02904 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:37
# Commandline: needle
#    -asequence dna-align/BSNT_02904___xylA.1.5803.seq
#    -bsequence dna-align/BL03867___xylA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02904___xylA-BL03867___xylA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02904___xylA-BL03867___xylA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02904___xylA
# 2: BL03867___xylA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1477
# Identity:     900/1477 (60.9%)
# Similarity:   900/1477 (60.9%)
# Gaps:         269/1477 (18.2%)
# Score: 2697.5
# 
#
#=======================================

BSNT_02904___      1 ATGGCTCAATCTCATTCCAGTTCAATTAACTATTTTGGA---AGCGCAAA     47
                                  ||    |||          ||||.||   |.||.|| 
BL03867___xyl      1 -------------AT----GTT----------TTTTAGAAATATCGGAA-     22

BSNT_02904___     48 CAAAGTGGTT---TACGAAGGGAAAGATTCGACTAATCCTTTAGCATTTA     94
                          ||.||   ||.||||||...||||||...|||||||..|||||||
BL03867___xyl     23 -----TGATTGAGTATGAAGGGGCCGATTCGGAAAATCCTTACGCATTTA     67

BSNT_02904___     95 AATATTATAATCCTCAAGAAGTAATCGGCGGAAAAACGATGAAAGAGCAT    144
                     |||||||.||.|||.|.|||.|..|||||||.|||||||||||.||.||.
BL03867___xyl     68 AATATTACAACCCTGATGAATTTGTCGGCGGCAAAACGATGAAGGAACAC    117

BSNT_02904___    145 TTGCGATTTTCTATTGCCTATTGGCATACATTTACTGCTGATGGTACGGA    194
                     .|.||.||..||.||||.|||||||||||.|||..|||.||.||.|..||
BL03867___xyl    118 CTTCGCTTCGCTGTTGCGTATTGGCATACCTTTGATGCGGACGGGAAAGA    167

BSNT_02904___    195 CGTTTTTGGATCAGCTACGATGCAAAGACCATG----------GGATC--    232
                     |..|||.||        |||.|   .|||.|||          |||.|  
BL03867___xyl    168 CCCTTTCGG--------CGACG---GGACGATGTTCCGGGCGTGGAACCG    206

BSNT_02904___    233 ACTATAAAGGCA-------TGGATCTAGCGAAGATGAGAGTAGAAGCAGC    275
                     .||     |.||       |||||..||||||....||.|..|||||.||
BL03867___xyl    207 GCT-----GACACATCCTTTGGATAAAGCGAAAGCCAGGGCGGAAGCGGC    251

BSNT_02904___    276 ATTTGAGATGTTTGAAATACTAG--ATGCACCATTCTTTGCTTTTCATGA    323
                     .|||||..|.|||||||..||.|  .|||.|.||| |.|| |||||||||
BL03867___xyl    252 TTTTGAATTTTTTGAAAAGCTCGGCGTGCCCTATT-TCTG-TTTTCATGA    299

BSNT_02904___    324 CCGGGATATTGCACCAGAAGGCAGTACGCTAAAAGAG--ACAAACC---A    368
                     ....|||||||              .||.|.||.|||  |||...|   |
BL03867___xyl    300 TGTTGATATTG--------------TCGATGAAGGAGCAACATTGCGTGA    335

BSNT_02904___    369 AA---------ATTTAGAT---ATGATCGTGGGCATGATT---AAAGATT    403
                     ||         ||||.|||   ||| ||||   |.|  ||   |||||..
BL03867___xyl    336 AACTTTCACGTATTTGGATCAAATG-TCGT---CTT--TTCTCAAAGAAA    379

BSNT_02904___    404 ACAT-GAGAAATAGCGGCGTTAAGCTATTATGGAATACCGCAAACATGTT    452
                     ..|| ||||.| |||...|||.||||..|.||||||||.||.||.|||||
BL03867___xyl    380 TGATGGAGACA-AGCCATGTTCAGCTGCTTTGGAATACAGCCAATATGTT    428

BSNT_02904___    453 TACGAATCCCCGTTTCGTCCATGGTGCCGCGACTTCTTGCAATGCAGATG    502
                     ||||.||||..|.|..|||||.||.|||||.|||||||||||||||||.|
BL03867___xyl    429 TACGCATCCGAGATATGTCCACGGGGCCGCAACTTCTTGCAATGCAGACG    478

BSNT_02904___    503 TGTTTGCGTATGCTGCAGCACAAGTGAAAAAAGGGTTAGAAACAGCAAAA    552
                     |.|.|||.|||||.||.|||.|||||||||||||..|.||.|..||.|||
BL03867___xyl    479 TCTATGCCTATGCAGCTGCAAAAGTGAAAAAAGGCCTGGACATCGCCAAA    528

BSNT_02904___    553 GAGCTTGGCGCTGAGAACTATGTATTTTGGGGCGGCCGTGAAGGATATGA    602
                     ||||||||.||.||.||||||||.||.||||||||..|.|||||.|||||
BL03867___xyl    529 GAGCTTGGAGCGGAAAACTATGTGTTCTGGGGCGGAAGAGAAGGTTATGA    578

BSNT_02904___    603 AACATTGTTAAATACCGATTTAAAATTTGAGCTTGATAATTTGGCTAGA-    651
                     |||||||.|.|||||.|||.|.||..|||||||.||.||.|||.||..| 
BL03867___xyl    579 AACATTGCTGAATACAGATATGAAGCTTGAGCTCGAAAACTTGTCTTCAT    628

BSNT_02904___    652 TTTATGCATATGGCAGTGGATTATGCGAAGGAAATCGGGT---ACACAGG    698
                     |||||..| ||||||||.||.||||||...||||||||.|   ||   ||
BL03867___xyl    629 TTTATAGA-ATGGCAGTTGAGTATGCGCGTGAAATCGGTTTTGAC---GG    674

BSNT_02904___    699 GCAGTTTTTGATTGAGCCAAAACCAAAAGAGCCGACCACCCATCAATACG    748
                     .||.|||||.||.|||||.||.||.||.||||||||.|..||.|||||||
BL03867___xyl    675 CCAATTTTTAATCGAGCCGAAGCCGAAGGAGCCGACGAAGCACCAATACG    724

BSNT_02904___    749 ATACAGATGCAGCAACAACCATTGCCTTTTTGAAGCAA--TATGGCTTAG    796
                     ||...||||||||.|||||.||.||.|||||  ||.||  ||.||.|||.
BL03867___xyl    725 ATTTTGATGCAGCCACAACGATCGCTTTTTT--AGAAACTTACGGTTTAA    772

BSNT_02904___    797 ACAATCATTTTAAATTAAATCTTGAAGCCAATCATGCCACATTAGCCGGG    846
                     |..|.|||||||||.|.||||||||.||.||.|||||.|||||.||||||
BL03867___xyl    773 AAGACCATTTTAAACTTAATCTTGAGGCGAACCATGCGACATTGGCCGGG    822

BSNT_02904___    847 CATACATTCGAACATGAATTACGCATGGCAAGAGTACATGGTCTGCTTGG    896
                     ||||||||.||.||||||.||.|..||||.....|.||.|.|.||||.||
BL03867___xyl    823 CATACATTTGAGCATGAACTAAGGGTGGCTGCCTTGCACGATATGCTGGG    872

BSNT_02904___    897 CTCTGTTGACGCAAACCAGGGTCATCCTCTTTTAGGCTGGGACACGGATG    946
                     .||..||||.||.||||||||..||...||.||.||||||||.||.||||
BL03867___xyl    873 TTCCATTGATGCCAACCAGGGCGATTTGCTCTTGGGCTGGGATACCGATG    922

BSNT_02904___    947 AATTTCCGACGGATTTATATTCTACGACATTAGCAATGTACGAAATCCTG    996
                     |.||||||||.|||.|.||||||.||....|.||.|||||.|||||..||
BL03867___xyl    923 AGTTTCCGACCGATCTGTATTCTGCGGTTCTGGCGATGTATGAAATTTTG    972

BSNT_02904___    997 CAAAATGGCGGCCTAGGAAGCGGCGGATTAAACTTTGATGCGAAGGTCAG   1046
                     .||...|||||..|...||.||||||..|.|||||.|||||.||.||.||
BL03867___xyl    973 AAAGCAGGCGGGTTTAAAACCGGCGGCATCAACTTCGATGCTAAAGTAAG   1022

BSNT_02904___   1047 AAGATCTTCTTTTGAGCCTGATGA--TCTAATAT-ATGCCCATATTGCAG   1093
                     ..|..|.||.||||   |.|||||  .||..|.| |.||.|||||.||||
BL03867___xyl   1023 GCGCCCGTCATTTG---CCGATGAGGACTTGTTTCACGCTCATATCGCAG   1069

BSNT_02904___   1094 GGATGGATGCATTTGCAAGAGGATTGAAAGTTGCCCACAAATTAATCGAA   1143
                     |.||||||.|.|.||||...||.||||||||.|||..|            
BL03867___xyl   1070 GAATGGATACGTATGCAGTCGGCTTGAAAGTCGCCTCC------------   1107

BSNT_02904___   1144 GATCGTGTGTTTGAAGAT---------------GTGATTCAACATCGTTA   1178
                        |||.||.||||||||               ||.||..||.|.|||||
BL03867___xyl   1108 ---CGTCTGCTTGAAGATAAAGCGCTCGATCAGGTTATCGAAGAACGTTA   1154

BSNT_02904___   1179 CCGCAGCTTTACTGAAGGGATTGGTCTTGAAATTATAGAAGG--------   1220
                     ....||||.|||..||||.||.||.||||||||.|.||||||        
BL03867___xyl   1155 TGAGAGCTATACGAAAGGCATCGGGCTTGAAATCAAAGAAGGCCGCACCG   1204

BSNT_02904___   1221 ------AAGAGCTAATTTTC-------ACACACTTGAGCAATATGCGCTA   1257
                           ||.|||      ||       ||.|.|||||            |
BL03867___xyl   1205 ATCTGAAAAAGC------TCGCCGCTTACGCTCTTGA------------A   1236

BSNT_02904___   1258 A---ATCATAAATTAATTAAAAACGAATCTGGAAGACAGGAGAA--ATTA   1302
                     |   |.|||      |||.||||..|.||.||..|.||  ||||  ..|.
BL03867___xyl   1237 AACGACCAT------ATTGAAAATCAGTCAGGCCGCCA--AGAACGGCTG   1278

BSNT_02904___   1303 AAAGCGA---------------TATTGAAC-------------------C   1318
                     ||.||||               ||||||||                   |
BL03867___xyl   1279 AAGGCGACCGTTAACCGTTACTTATTGAACGCTTTGCGCGAAGCGCCGGC   1328

BSNT_02904___   1319 A-------ATACATTTTAGAAGTATAA   1338
                     |       |.|||...|||        
BL03867___xyl   1329 AGGAAAGGAGACACACTAG--------   1347


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