Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05879 and BL03853

See Amino acid alignment / Visit BSNT_05879 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05879___ywaF.1.5803.seq
#    -bsequence dna-align/BL03853___ywaF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05879___ywaF-BL03853___ywaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05879___ywaF-BL03853___ywaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05879___ywaF
# 2: BL03853___ywaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 811
# Identity:     486/811 (59.9%)
# Similarity:   486/811 (59.9%)
# Gaps:         167/811 (20.6%)
# Score: 1349.0
# 
#
#=======================================

BSNT_05879___      1 TTGCAAAAATATGTTCAATCCGACTATAAGCATGATC----CGTTTCATC     46
                     .||.|||.|||..|||||...||.|||.|||    ||    |||||||.|
BL03853___ywa      1 ATGAAAACATACTTTCAAAAAGATTATCAGC----TCGGCTCGTTTCAGC     46

BSNT_05879___     47 TGTTTTCGACAGAGCA---CGTA--GTGAC---GTTAGCGATTATCGCCC     88
                     |.|||||     ||||   |.||  |||||   |.|||.||||...||.|
BL03853___ywa     47 TATTTTC-----AGCATCCCATATTGTGACTTTGCTAGTGATTGCGGCGC     91

BSNT_05879___     89 T-----TTTGGCCATTCTGTT-GTTTTTGTTCCAAGATG-GGGTCAAGCA    131
                     |     ||||     |||||| ||.||     ||.||.| .|.||.|..|
BL03853___ywa     92 TTGGTGTTTG-----TCTGTTCGTCTT-----CAGGAAGACGCTCCAAAA    131

BSNT_05879___    132 GCCG--AGGGCCAGCCGGTTTTTGCGTTCTCTGTTTGT---GTTTCTTTT    176
                     ||||  |.||  |.||||||..|.||||.|.|.|||||   |.||||   
BL03853___ywa    132 GCCGGAATGG--AACCGGTTAATTCGTTATGTCTTTGTGGCGGTTCT---    176

BSNT_05879___    177 GC-TTGGTTCGCAAATCGGCTATCAAATATGG-----------------A    208
                      | ||..||||.||||||||||.||....|||                 |
BL03853___ywa    177 -CATTATTTCGGAAATCGGCTACCACTCCTGGTTCGTTTATGTGAACTCA    225

BSNT_05879___    209 TGGTCGCCACGGGCAGGTGGTCGGTGCGCACTTCATTGCCTCTCCAGCTT    258
                     |||.||||                 ||||..||..|||||.|||||.||.
BL03853___ywa    226 TGGACGCC-----------------GCGCTATTGTTTGCCGCTCCACCTC    258

BSNT_05879___    259 AGTGACCTGTCGGTGTA-TTTGTCAGCTATTATGTTAGTGACAAAAAGCA    307
                     ||.|||||.|||||.|| .||||||.| ||..|||||.||||.||||.|.
BL03853___ywa    259 AGCGACCTTTCGGTTTACCTTGTCATC-ATCCTGTTATTGACGAAAAACC    307

BSNT_05879___    308 GAAAGCTGTTTGTGTTTTTGTTTTTTGCCGGCATCGGCAGTTCGATTCAG    357
                     ..||..|||||...|||.|.|.|||||||||..|.||.||..||.|.|||
BL03853___ywa    308 TCAACTTGTTTAAATTTCTTTATTTTGCCGGTTTGGGAAGCGCGCTGCAG    357

BSNT_05879___    358 GCTCTTGCCACTCCTGACCTCGGAATG------TTT--TCATTTCCGCAT    399
                     ||..||...||.||||||.|.||||.|      |||  ||||||||||.|
BL03853___ywa    358 GCGATTCTGACGCCTGACTTGGGAAGGTACGGCTTTCCTCATTTCCGCTT    407

BSNT_05879___    400 ATCCGATATATCCTCTTTTTTATTTCTCACGGG-TCTGTGTTTTTATCCT    448
                     .|..||        .|||||.|||||.|||||| || ||..||.|..|||
BL03853___ywa    408 TTTTGA--------ATTTTTCATTTCCCACGGGATC-GTCGTTCTCGCCT    448

BSNT_05879___    449 GTCTGCTGATGGCTGTGATTGGCACCAACAGAATGG-----GCCAG----    489
                     |.||.||||      ||||||    ||.|.|||.||     ||| |    
BL03853___ywa    449 GCCTCCTGA------TGATTG----CAGCCGAAAGGTATAAGCC-GACGG    487

BSNT_05879___    490 --CGCTCGTTATGGGTGACAGTCCTGCTTGTTAATGTGTACGGCG-TCTG    536
                       |||||..|.|||||.||..|.||.|||||.|||||.||.|||| ||| 
BL03853___ywa    488 TTCGCTCTCTCTGGGTCACGTTTCTTCTTGTCAATGTTTATGGCGCTCT-    536

BSNT_05879___    537 TATTTTCCTGATTGATCGCTGGCTTGGCGCGAATTATATGTATTTGACGA    586
                     .|||||..||||..|.||.|.|||...|.||||.||||||||..|||.||
BL03853___ywa    537 CATTTTTTTGATCAACCGTTTGCTGAACTCGAACTATATGTACATGATGA    586

BSNT_05879___    587 AAAAACC---GGGCGGATCCTCTCTCTTAGATGTTCTCGGGCCATGGCCA    633
                     |.||.||   .||||||.|.||.||.||||||||.||||||||||||||.
BL03853___ywa    587 AGAAGCCCGGCGGCGGAGCATCGCTGTTAGATGTGCTCGGGCCATGGCCG    636

BSNT_05879___    634 TGGTATATCGTCTCGGCTGAAGCCATCACGGTCGCCAGCTT-TTTCATTC    682
                     ||||||.|..|.||.||||||||..|||||.|||.|..||| |.|| |||
BL03853___ywa    637 TGGTATCTTTTATCAGCTGAAGCGGTCACGATCGTCTTCTTCTATC-TTC    685

BSNT_05879___    683 TTTATATGC---TTT--ATCGCATCTTC--------------AAAAAATG    713
                     |.|||.|||   |||  |||||     |              ||||||.|
BL03853___ywa    686 TCTATTTGCCGTTTTGGATCGC-----CGGGAAGGTGAGAGAAAAAAAGG    730

BSNT_05879___    714 A----------    714
                     |          
BL03853___ywa    731 ATCATGCATGA    741


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05879 and BL03853

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
