Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05900 and BL03844
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:58
# Commandline: needle
# -asequence dna-align/BSNT_05900___licH.1.5803.seq
# -bsequence dna-align/BL03844___licH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05900___licH-BL03844___licH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05900___licH-BL03844___licH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05900___licH
# 2: BL03844___licH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1348
# Identity: 1037/1348 (76.9%)
# Similarity: 1037/1348 (76.9%)
# Gaps: 38/1348 ( 2.8%)
# Score: 3950.5
#
#
#=======================================
BSNT_05900___ 1 ATGACAAAAGGATTGAAGATTGTAACGATTGGCGGAGGTTCAAGCTATAC 50
||||.||||||||||||.||.|||||.|||||||||||||||||.|||||
BL03844___lic 1 ATGAAAAAAGGATTGAAAATCGTAACAATTGGCGGAGGTTCAAGTTATAC 50
BSNT_05900___ 51 GCCCGAGCTAGTGGAGGGGTTCATTAAACGGTATGATGAGCTGCCTGTCC 100
|||||||||.||.|||||.||.||.||||||.||||.|||||.||.|||.
BL03844___lic 51 GCCCGAGCTTGTCGAGGGATTAATCAAACGGCATGACGAGCTTCCGGTCA 100
BSNT_05900___ 101 GTGAATTATGGCTTGTCGATATCCCCGAGGGCGAAGAAAAGCTGAATATT 150
|.||..|.|||||.||||||||.||.||.||.||||||||.||.|||||.
BL03844___lic 101 GCGAGCTCTGGCTCGTCGATATACCGGAAGGGGAAGAAAAACTTAATATC 150
BSNT_05900___ 151 GTCGGCACACTCGCCAAAAGGATGGTTGAAAAAGCTGGCGTCCCGATTGA 200
||||||||.||.||.||..|.|||||.||||||||.|||||||||||..|
BL03844___lic 151 GTCGGCACGCTGGCGAAGCGAATGGTCGAAAAAGCAGGCGTCCCGATCAA 200
BSNT_05900___ 201 CATTCATCTTACGCTCGACCGGAGAAAAGCGCTGAAAGACGCAGACTTTG 250
..|.|||||.|||||.|||||.||..|.||..|.||||||||.||.||||
BL03844___lic 201 AGTCCATCTGACGCTAGACCGCAGGGAGGCTTTAAAAGACGCTGATTTTG 250
BSNT_05900___ 251 TTACGACCCAATTCCGTGTCGGACTTTTGC---AGGCAAGAGCAAAGGAT 297
|.|||||.||||||||.||||| .|||| |.||.||||||||.|||
BL03844___lic 251 TCACGACGCAATTCCGCGTCGG---CTTGCTCGAAGCGAGAGCAAAAGAT 297
BSNT_05900___ 298 GAGCGCATTCCGCTAAAATATGGTGTAATTGGCCAGGAAACAAACGGCCC 347
||.||.|||||..|||||||.||.||.||.||.|||||||||||.||.||
BL03844___lic 298 GAACGAATTCCTTTAAAATACGGGGTGATCGGTCAGGAAACAAATGGACC 347
BSNT_05900___ 348 GGGAGGCCTGTTTAAAGGATTGCGCACAATTCCGGTCATCCTTGAGATCG 397
|||.|||||.||.||.||..|.|||||.||||||||||||||||||||.|
BL03844___lic 348 GGGCGGCCTTTTCAAGGGGCTTCGCACCATTCCGGTCATCCTTGAGATTG 397
BSNT_05900___ 398 CAAAGGACATAGAAGAGCTTTGCCCGAACGCTTGGCTTGTTAACTTCACA 447
||||.|||||.|||||.||.|||||..||||.||||||||.||.||.||.
BL03844___lic 398 CAAAAGACATCGAAGAACTGTGCCCCGACGCGTGGCTTGTCAATTTTACC 447
BSNT_05900___ 448 AACCCTGCCGGCATGGTAACAGAAGCCTTGCTTCGCTACGCCAACCTGAA 497
|||||.||.||||||||.||.|||||..||||.|||||..|.||..||||
BL03844___lic 448 AACCCGGCAGGCATGGTGACTGAAGCGCTGCTCCGCTATTCTAATTTGAA 497
BSNT_05900___ 498 GAAAGTCGTCGGTCTCTGTAATGTTCCAATCGGCATCAAAATGGGCGTAG 547
.|||||||||||.|||||.|||||.||.||||||||.||.|||||.||.|
BL03844___lic 498 AAAAGTCGTCGGGCTCTGCAATGTGCCGATCGGCATGAAGATGGGGGTTG 547
BSNT_05900___ 548 CCAAAGCGCTTGATGTAGATGTGGACCGCGTAGAAGTCCAATTCGCCGGA 597
|.||.|||||.|||||.||||....||||.||||..|.|||||.||.|||
BL03844___lic 548 CAAAGGCGCTCGATGTTGATGAAAGCCGCATAGACATTCAATTTGCAGGA 597
BSNT_05900___ 598 CTGAACCATATGGTATTTGGGCTGGATGTTTTCTTGGACGGCGTAAGTGT 647
.|.||.||||||||.||.||.||.||.||||||.|.||||||||.||.||
BL03844___lic 598 TTAAATCATATGGTGTTCGGACTCGACGTTTTCCTTGACGGCGTCAGCGT 647
BSNT_05900___ 648 GAAGGAGCAAGTCATCGAGGCGATGGGCGACCCGAAAAACGCGATGACGA 697
.||.||..||||.|||||.|||||||..||.||..||||.||||||||||
BL03844___lic 648 CAAAGACAAAGTGATCGAAGCGATGGCAGATCCAGAAAATGCGATGACGA 697
BSNT_05900___ 698 TGAAAAATATCTCAGGCGCCGAA---TGGGAACCGGATTTCTTAAAAGCG 744
||||||||||||| ||..||| ||||||||.||.| |||...|||
BL03844___lic 698 TGAAAAATATCTC---CGGAGAATCGTGGGAACCCGACT--TTATCCGCG 742
BSNT_05900___ 745 --CTCAATG---TCATCCCTTGCGGCTATCACCGTTACTATTTCAAAACA 789
|| || |.||.||.||||||||.|||||.|||||.|..||||||
BL03844___lic 743 GCCT---TGGCCTGATTCCGTGCGGCTACCACCGCTACTACTATAAAACA 789
BSNT_05900___ 790 AAAGAGATGCTGGAGCACGAACTGGAAGCATCACAAACGGAGGGCACCCG 839
.|.||.|||||.||.|||||||||||.||.|||.|||||||.||.||.||
BL03844___lic 790 CAGGAAATGCTTGAACACGAACTGGAGGCTTCAAAAACGGAAGGAACGCG 839
BSNT_05900___ 840 CGCAGAAGTCGTACAGAAGGTCGAAAAAGAGCTGTTCGAGCTTTATAAAG 889
.|||||.||.||.|||.|.||.|||||.||..||||.|||||.|||||||
BL03844___lic 840 TGCAGAGGTTGTTCAGCAAGTTGAAAAGGAATTGTTTGAGCTGTATAAAG 889
BSNT_05900___ 890 ATCCGAACCTTGCGATCAAACCGCCGCAGCTGGAAAAACGGGGCGGAGCT 939
|||||.|.||.||||||||||||||.|||||.|||||.||.|||||.||.
BL03844___lic 890 ATCCGGAGCTGGCGATCAAACCGCCCCAGCTTGAAAAGCGCGGCGGCGCA 939
BSNT_05900___ 940 TACTACAGTGATGCAGCATGTAACTTAATCAGCTCCATTTATAATGATAA 989
||.|||||||||||.||.||.|||||.||||||||.|||||.|||||.||
BL03844___lic 940 TATTACAGTGATGCCGCCTGCAACTTGATCAGCTCGATTTACAATGACAA 989
BSNT_05900___ 990 ACATGACATTCAGCCGGTGAACACAATCAATAATGGTGCAATAGCGAGCA 1039
.||.||.|||||.||.||.|||||.||.|||||.||.||.||.||.||||
BL03844___lic 990 GCACGATATTCAACCTGTTAACACGATGAATAACGGAGCGATCGCAAGCA 1039
BSNT_05900___ 1040 TTCCAGACGATTCCGCAGTTGAAGTGAACTGTGTGATGACGAAAACTGGC 1089
||||.||.||.||||||||.|||||.||||||||.||||||||||..||.
BL03844___lic 1040 TTCCTGATGACTCCGCAGTGGAAGTCAACTGTGTCATGACGAAAAACGGG 1089
BSNT_05900___ 1090 CCTAAGCCAATTGCTGTCGGCGACTTGCCGGTGTCTGTCCGT----GGCC 1135
||.||.||.||.||.|||||.||.||||| |||| .|||| ||.|
BL03844___lic 1090 CCGAAACCGATCGCGGTCGGAGATTTGCC--TGTC--ACCGTGAGAGGTC 1135
BSNT_05900___ 1136 TCGTCCAGCAAATCAAATCCTTTGAACGTGTCGCGGCAGAAGCGGCAGTT 1185
|.|||||||||||.|||||.||.|||||.||.|||||.||||||||.|||
BL03844___lic 1136 TTGTCCAGCAAATTAAATCGTTCGAACGCGTTGCGGCTGAAGCGGCTGTT 1185
BSNT_05900___ 1186 ACAGGTGACTACCAAACTGCACTCCTTGCCATGACGATTAACCCGCTTGT 1235
|||||.||.|||.|.||||||||..|.|||||||||||.||||||||.||
BL03844___lic 1186 ACAGGCGATTACAACACTGCACTTGTGGCCATGACGATCAACCCGCTCGT 1235
BSNT_05900___ 1236 CCCGTCCGATACTGTGGCCAAACAGATTTTAGACGAAATGCTGGAGGCGC 1285
.||||||||.|...|.||.|||||.||..|.|||||||||||.||.||||
BL03844___lic 1236 TCCGTCCGACAAAATTGCGAAACAAATACTGGACGAAATGCTTGAAGCGC 1285
BSNT_05900___ 1286 ACAAAGCGTATCTGCCGCAGTTTTTCAACAAAA----TTGAAGCGTAA 1329
|.||||.|.||||.||||||||||| .|.| |.|||||.||.
BL03844___lic 1286 ATAAAGAGCATCTTCCGCAGTTTTT----TAGATCTGTAGAAGCATAG 1329
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