Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05903 and BL03842

See Amino acid alignment / Visit BSNT_05903 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:59
# Commandline: needle
#    -asequence dna-align/BSNT_05903___licC.1.5803.seq
#    -bsequence dna-align/BL03842___licC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05903___licC-BL03842___licC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05903___licC-BL03842___licC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05903___licC
# 2: BL03842___licC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1383
# Identity:    1009/1383 (73.0%)
# Similarity:  1009/1383 (73.0%)
# Gaps:          54/1383 ( 3.9%)
# Score: 3473.0
# 
#
#=======================================

BSNT_05903___      1 GTGAATAAAGTCAAT-CAGATCTTAGAAGAAAAGGTCATGCCTATAGCGG     49
                     |||||.||..|.||| || .|.|||||.||.|||.|||||||..|.||.|
BL03842___lic      1 GTGAACAAGTTTAATGCA-TTTTTAGAGGAGAAGATCATGCCGGTTGCCG     49

BSNT_05903___     50 GAAGAATTGCGGGACAGCGTCATTTGCAGGCGCTGCGTGATGGTATCATC     99
                     |.||||||||.|..|||||.|||||||||||.||..|.||.||.||.||.
BL03842___lic     50 GCAGAATTGCCGCCCAGCGCCATTTGCAGGCTCTCAGAGACGGCATTATT     99

BSNT_05903___    100 CTCACGATGCCCCTGATTATCATCGGTTC-CTTTTTCCTCATCATTGGCA    148
                     ||.||.|||||..|.||.||.|||||.|| ||.||| |||||..|.|.||
BL03842___lic    100 CTGACCATGCCATTAATCATTATCGGATCGCTGTTT-CTCATTTTAGCCA    148

BSNT_05903___    149 ACCTCCCGATCCCGGGATACGCTGAGTTTATGGCAAAAACGTTTGGCAGC    198
                     |..|.|||||.||||||||..|.||.||.|||||....|..||.||| |.
BL03842___lic    149 ATTTGCCGATTCCGGGATATCCGGAATTCATGGCGGGGATTTTCGGC-GA    197

BSNT_05903___    199 TC-CTGGTCTGAAAAACTGGCCTACCCAGTCGACGCGACCTTTGAAATTA    247
                     || .|||.||||.|||.|...|||.||.||..|.|..|.||||||.||||
BL03842___lic    198 TCAATGGGCTGAGAAATTAAGCTATCCGGTTAATGTCAGCTTTGACATTA    247

BSNT_05903___    248 TGGGTCTTGTCGCCGCGTTCGGCATCGCCTACCGGCTCGCCGAGAAATAC    297
                     |||..||..|||||.||||.||||||||||||||.||.||.||||||||.
BL03842___lic    248 TGGCGCTGATCGCCACGTTTGGCATCGCCTACCGTCTGGCGGAGAAATAT    297

BSNT_05903___    298 GGTGTTGATGCCTTGTCGGCCGGAGCCATTTCCCTTGCGGCATTTTTATT    347
                     |.|.|.||||||.||||..|.||.||||||.||.|.||.||.|||.|..|
BL03842___lic    298 GATATCGATGCCCTGTCATCGGGCGCCATTGCCGTAGCAGCTTTTCTGCT    347

BSNT_05903___    348 AGCAACACCTTATCAAGTGCCTTTTATGCCGGATGGCGCGACGAAAGAAA    397
                     .||.||.||.||.||..|.||.||.|..||.||.|||||.||..|.||||
BL03842___lic    348 TGCGACCCCCTACCAGATTCCGTTCACACCCGAAGGCGCAACAGAGGAAA    397

BSNT_05903___    398 TCATGGTTGGC-GGCGGGATTCCGCTTTCGCTCATGGGAAGCAAAGGCTT    446
                     |..|.| ||.| |||||.||.|||.||||..|.||||||||||||||..|
BL03842___lic    398 TTTTAG-TGTCAGGCGGCATCCCGATTTCATTAATGGGAAGCAAAGGTCT    446

BSNT_05903___    447 ATTTGTCGCCATGATTATCGCAATGGTGTCCACAGAGATTTACCGC----    492
                     .|||||||.||||.|.|||||.|||.|.|||||.|||.||||||||    
BL03842___lic    447 GTTTGTCGGCATGCTGATCGCGATGTTCTCCACTGAGGTTTACCGCTGGG    496

BSNT_05903___    493 -CTTATTATCCAGCGCA-ATTTAGTCTTCAAAATGCCGGACGGTGTCCCG    540
                      |.|    ||.|..|.| |||  |||.||||||||||||||||.||.|||
BL03842___lic    497 TCGT----TCAAAAGGATATT--GTCGTCAAAATGCCGGACGGCGTACCG    540

BSNT_05903___    541 CCGGCGGTAAGCAAGTCATTTGTCGCGTTAATCCCCGGCTTTGCCGTCAT    590
                     |||||.||.|||||.||||||.||||..|.||.||.||.||.|||||.||
BL03842___lic    541 CCGGCTGTCAGCAAATCATTTATCGCTCTGATTCCGGGATTCGCCGTTAT    590

BSNT_05903___    591 CTTCCTGATTTGGGCAGCCCGGCTGATTGTTGAAGCGACACCGTTTGAAA    640
                     |..|..|||.|||||.|||||.||..|..|||||..|||.||||||||||
BL03842___lic    591 CGGCTCGATCTGGGCGGCCCGCCTTTTAATTGAAATGACGCCGTTTGAAA    640

BSNT_05903___    641 GCCTTCATAATATTGTAAGCGTTTTATTGGGGACTCCGCTTTCCATTCTG    690
                     ||||.||||||.|.||.|.|||..|.|||||.||.||.||||||.|.||.
BL03842___lic    641 GCCTCCATAATGTCGTCAACGTCCTTTTGGGAACGCCTCTTTCCGTCCTT    690

BSNT_05903___    691 GGAGGAAGCCTTGGAGGAAGCCTTGTCGCCGAAGCCGTCAAAATGCTTTT    740
                     ||.||.||.||.||.|||||||||.|.||||||.|.||.||||||||..|
BL03842___lic    691 GGCGGCAGTCTCGGCGGAAGCCTTATTGCCGAAACTGTGAAAATGCTGCT    740

BSNT_05903___    741 ATGGGCCTGCGGCCTTCACGGTGCAAACATTGTCGGCGGCGTCATGGCAC    790
                     .|||.|||||||||||||.||.|||||||||||||||||.||.|||.|.|
BL03842___lic    741 GTGGTCCTGCGGCCTTCATGGAGCAAACATTGTCGGCGGAGTGATGTCGC    790

BSNT_05903___    791 CGATTTGGTACGGCGCAATGGATGCCAACCGGATCGCCTTCCAAGCCGGT    840
                     ||||.||||||||.||.|||||.|..|||||..||||.|||||||||||.
BL03842___lic    791 CGATCTGGTACGGAGCGATGGACGAAAACCGTCTCGCTTTCCAAGCCGGA    840

BSNT_05903___    841 GAGGAGCTTCCTAAGATTTTCACCCAGCAATTTTTCGATATCTGGGTCAA    890
                     ||.|.|||.||.||.||.||.||...|||.|||||.||.||.|||.||||
BL03842___lic    841 GAAGCGCTCCCGAACATATTTACGACGCAGTTTTTTGAGATTTGGATCAA    890

BSNT_05903___    891 TATCGGCGGAAGCGGCGCCACATTGGCACTGGTTGTCACGATGTTCCTGC    940
                     .||||||||.||||||||.||.|||||..||||..|.||||||||.||..
BL03842___lic    891 CATCGGCGGCAGCGGCGCTACTTTGGCTTTGGTCATTACGATGTTTCTTA    940

BSNT_05903___    941 GCGCCCGAAGCAAACAAATGAAGCAGCTCGGGAAGCTTGCGGTCGGACCG    990
                     |.||.||||||||.||||||||.||||||||.|..||.||..||||.||.
BL03842___lic    941 GGGCGCGAAGCAAGCAAATGAAACAGCTCGGCAGACTCGCCATCGGCCCC    990

BSNT_05903___    991 GCCATCTTCAATATTAACGAACCGATTATATTCGGAATGCCGATCGTCAT   1040
                     ||..|.||.||.||.||||||||||||||.|||||.||||||||||||||
BL03842___lic    991 GCTGTTTTTAACATCAACGAACCGATTATCTTCGGCATGCCGATCGTCAT   1040

BSNT_05903___   1041 GAACCCAATGCT-CTTACTTCCGTTTATCATCACACCGCT--TG-TCACA   1086
                     ||||||.||||| ||.| |.|||||.|||.|..|.|||||  || |.|.|
BL03842___lic   1041 GAACCCGATGCTGCTGA-TCCCGTTCATCGTGTCGCCGCTGCTGATGATA   1089

BSNT_05903___   1087 GTGACACTTACGTACATCGGAATGAGCACCGGCCTTGTCGCAAAACCGGC   1136
                     ..|.||   ||.||.||.|||||||||||.||.|||||.|||||.|||||
BL03842___lic   1090 ACGGCA---ACCTATATTGGAATGAGCACAGGTCTTGTTGCAAAGCCGGC   1136

BSNT_05903___   1137 GGGTATCGCAGTGCCGTGGACCATGCCGCCGATCTTTTCAGGCTATTTGG   1186
                     .||.||.||.|||||||||||.||||||||...||||||.||.|||||||
BL03842___lic   1137 TGGGATTGCCGTGCCGTGGACGATGCCGCCCGGCTTTTCCGGATATTTGG   1186

BSNT_05903___   1187 CGACTGGAGGAAAAGTCTCAGGCGCGGTCATGCAAGC-CATTAA--TATT   1233
                     |.||.|||||.|||.|.||.||.|||||||||| ||| .||.||  |.||
BL03842___lic   1187 CAACAGGAGGGAAAATTTCCGGAGCGGTCATGC-AGCTGATCAATCTGTT   1235

BSNT_05903___   1234 GCCGTGTCCTTTGTTGTCTACTATCCATTCTTCAGAATGTGGGATAAGCA   1283
                     |  .|.||.|||||.||.||||||||.|||||.||||||||||||||.||
BL03842___lic   1236 G--ATCTCGTTTGTCGTATACTATCCGTTCTTTAGAATGTGGGATAAACA   1283

BSNT_05903___   1284 GAAGCTGAAAGAAGAAAACGATCTGGAG-CTGGTCAAAACGCCTGC-AGC   1331
                     .||||||||||||||.|.|||.|||||| |.||    ||||.|||| |||
BL03842___lic   1284 AAAGCTGAAAGAAGAGAGCGAACTGGAGACCGG----AACGGCTGCAAGC   1329

BSNT_05903___   1332 ATCAGAT-GACAAAGAAGCGGCTC--TGTAG--   1359
                         ||| |.|||     |.|.||  ||||.  
BL03842___lic   1330 ----GATGGTCAA-----CAGGTCAGTGTATAG   1353


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