Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05904 and BL03841

See Amino acid alignment / Visit BSNT_05904 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:59
# Commandline: needle
#    -asequence dna-align/BSNT_05904.1.5803.seq
#    -bsequence dna-align/BL03841___licB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05904-BL03841___licB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05904-BL03841___licB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05904
# 2: BL03841___licB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 315
# Identity:     202/315 (64.1%)
# Similarity:   202/315 (64.1%)
# Gaps:          72/315 (22.9%)
# Score: 781.5
# 
#
#=======================================

BSNT_05904         0 --------------------------------------------------      0
                                                                       
BL03841___lic      1 ATGAATATCTTATTAGCTTGCGCCGCAGGAATGTCAACGAGTCTGCTTGT     50

BSNT_05904         1 -------ATGGAAAAAAGTGCGCAGGAACAGGGAAAAGACTATACCATTT     43
                            ||||||||||||||..|||||||.|||||||||||||..||.|
BL03841___lic     51 GACGAAAATGGAAAAAAGTGCAGAGGAACAAGGAAAAGACTATAAAATCT    100

BSNT_05904        44 GGGCAGTTTC---AGGCGATTCTGTACAAAATCATATCGATAAAGCGGAT     90
                     ||||.|||||   |||.||   .||.||.|||||||||||||||||.||.
BL03841___lic    101 GGGCCGTTTCCGGAGGAGA---GGTTCAGAATCATATCGATAAAGCCGAC    147

BSNT_05904        91 GTATTGCTTCTCGGTCCGCAAGTCCGTTACATGCTTCCGCAGCTCAAAAA    140
                     |||||||||||.||.||||||||||||||||||||.|||||..|.||.||
BL03841___lic    148 GTATTGCTTCTTGGCCCGCAAGTCCGTTACATGCTCCCGCAATTAAAGAA    197

BSNT_05904       141 ATTAGGAGAGTC-AAAGGGGGTTCCGGTAGATGTCATTAATACCGTCCAT    189
                     |||||||||.|| |||||.|..||| ||.||||||||.|||||.||||||
BL03841___lic    198 ATTAGGAGAATCGAAAGGTGTATCC-GTCGATGTCATCAATACGGTCCAT    246

BSNT_05904       190 TATGGCACGTGCAACGGGGCGGAAGTGCTGAAATCAGCTGAACAGCTTG-    238
                     ||.||.||.||.||.||.||.||||||.|.|||||.||.|||||||||| 
BL03841___lic    247 TACGGAACTTGTAATGGAGCTGAAGTGTTAAAATCCGCCGAACAGCTTGC    296

BSNT_05904       239 -GACATGTGTCATAG    252
                      |.|     ||.||.
BL03841___lic    297 CGGC-----TCTTAA    306


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