Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02113 and BL03837

See Amino acid alignment / Visit BSNT_02113 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_02113___yjqB.1.5803.seq
#    -bsequence dna-align/BL03837___yjqB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02113___yjqB-BL03837___yjqB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02113___yjqB-BL03837___yjqB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02113___yjqB
# 2: BL03837___yjqB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 722
# Identity:     354/722 (49.0%)
# Similarity:   354/722 (49.0%)
# Gaps:         235/722 (32.5%)
# Score: 775.0
# 
#
#=======================================

BSNT_02113___      1 ATGAAAGATATGTATGACAGCTTTGCAGCCCTTTCTGCTTCTGAGTCGGA     50
                                                                       
BL03837___yjq      0 --------------------------------------------------      0

BSNT_02113___     51 GTACCGGATTATTTATGAGGAGAAAAACG-----GAAGTGA--GCTTA-T     92
                                   ||| |.|| ||||||     ||||.||  |.||| |
BL03837___yjq      1 --------------ATG-GCAG-AAAACGAAATAGAAGGGACCGATTATT     34

BSNT_02113___     93 CG-----TCCTCGG-----------------------------TCCCCAC    108
                     ||     |.|||||                             |||||||
BL03837___yjq     35 CGGTGGCTGCTCGGGATGCAGGGAGCGCTCTGCTTGTGATGGCTCCCCAC     84

BSNT_02113___    109 GGCGGCAGAATTGAGCCTGGCGTCAGTGAATTGGTGCGGGCATTTTCGGA    158
                     ||.|||.|.||.|||||.|||.||||||||.|.||...|||.|||.|.||
BL03837___yjq     85 GGGGGCGGGATCGAGCCGGGCATCAGTGAAATTGTCAAGGCTTTTGCAGA    134

BSNT_02113___    159 --TCGATGCTCCATCTATTTGTTTGAGGGTGTAAAACAGCGAAACAAT-C    205
                       .||.|  ||..|.|||||.||.||.||..|.|||..|||...|||| .
BL03837___yjq    135 GGGCGCT--TCGGTTTATTTATTGGAAGGATTGAAAAGGCGCGGCAATAA    182

BSNT_02113___    206 GTTCCTTGCATCTCACCAGCATTCGTTTTGA-TGAGCCGCTGGCTTTAGA    254
                     |..|||| |||.|.||.|||..||.|||||| || .|||||.||.||   
BL03837___yjq    183 GAGCCTT-CATGTGACAAGCGCTCATTTTGACTG-CCCGCTTGCCTT---    227

BSNT_02113___    255 AAAAGTGAATGCC-------CACCATTACGCATTAGCGTTTCACGGGTAT    297
                         |.|||||.|       ||||..|||..|.|.||.||||||||||||
BL03837___yjq    228 ----GCGAATGGCTGCAGGACACCGGTACATACTGGCTTTTCACGGGTAT    273

BSNT_02113___    298 TATGATCCAAACATCC----CG-CATACTTTGGTCGGCGGGGCTGATCGA    342
                     .|.||.||     |.|    || |||||..|..||||.|||.|.||||| 
BL03837___yjq    274 GAGGAGCC-----TGCTCATCGACATACGCTCATCGGAGGGACAGATCG-    317

BSNT_02113___    343 AAAAAAGCCAAGCTCATT--TGT-----GAG-CGTCTGAATGAAG--CGG    382
                         |||.|  ||.|.||  |||     ||| |.|..||  ||.|  |||
BL03837___yjq    318 ----AAGGC--GCGCCTTGATGTTTAAGGAGACATTGGA--GAGGCACGG    359

BSNT_02113___    383 GTTTTAGC-GCCGAGCTAACTAATGAGAAAGACCGCCTGGCAGGTGTACA    431
                     .||||  | ||.|||||..|...|||.|..|.|...||..|||||..|.|
BL03837___yjq    360 ATTTT--CTGCGGAGCTGGCGGCTGAAAGGGGCTATCTTTCAGGTACAAA    407

BSNT_02113___    432 CC---CAAGCAATATTGTCAATCG--GACGAA-------AAGAGAAATGG    469
                     ||   |||||   ||...||||||  |.|.||       |||.|      
BL03837___yjq    408 CCCTGCAAGC---ATCAACAATCGCTGCCAAACCGGTTTAAGCG------    448

BSNT_02113___    470 GGCTGCAATTGGAGGTGAGCACGGCACAAAGAAACGCGCTGTTCT--GCA    517
                        |||||||.||..|.|||||.||.||..|.||.|||.|||| |  |||
BL03837___yjq    449 ---TGCAATTTGAAATCAGCACAGCCCAGCGGAAGGCGATGTT-TGAGCA    494

BSNT_02113___    518 ATT----TT----GGGTGCCGTGATAAAAG-CTACATACAAAACGACTTG    558
                     |||    ||    ||..|.||     ||.| ||     |||||.||..||
BL03837___yjq    495 ATTCACATTAAAGGGCAGGCG-----AACGTCT-----CAAAATGAGGTG    534

BSNT_02113___    559 TTTGATCGATATGTGGAAGCCGTCAAGCTTG--GCTTTTAT-ACATAA--    603
                     |||...||.|||||..||||..|.|||...|  ||.|..|| .||||.  
BL03837___yjq    535 TTTTCCCGCTATGTCAAAGCTTTGAAGGAAGGAGCATGCATCGCATATGG    584

BSNT_02113___    603 ----------------------    603
                                           
BL03837___yjq    585 GCCGAGTGCAGCCGGCAGCTGA    606


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