Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02113 and BL03837
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_02113___yjqB.1.5803.seq
# -bsequence dna-align/BL03837___yjqB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02113___yjqB-BL03837___yjqB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02113___yjqB-BL03837___yjqB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02113___yjqB
# 2: BL03837___yjqB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 722
# Identity: 354/722 (49.0%)
# Similarity: 354/722 (49.0%)
# Gaps: 235/722 (32.5%)
# Score: 775.0
#
#
#=======================================
BSNT_02113___ 1 ATGAAAGATATGTATGACAGCTTTGCAGCCCTTTCTGCTTCTGAGTCGGA 50
BL03837___yjq 0 -------------------------------------------------- 0
BSNT_02113___ 51 GTACCGGATTATTTATGAGGAGAAAAACG-----GAAGTGA--GCTTA-T 92
||| |.|| |||||| ||||.|| |.||| |
BL03837___yjq 1 --------------ATG-GCAG-AAAACGAAATAGAAGGGACCGATTATT 34
BSNT_02113___ 93 CG-----TCCTCGG-----------------------------TCCCCAC 108
|| |.||||| |||||||
BL03837___yjq 35 CGGTGGCTGCTCGGGATGCAGGGAGCGCTCTGCTTGTGATGGCTCCCCAC 84
BSNT_02113___ 109 GGCGGCAGAATTGAGCCTGGCGTCAGTGAATTGGTGCGGGCATTTTCGGA 158
||.|||.|.||.|||||.|||.||||||||.|.||...|||.|||.|.||
BL03837___yjq 85 GGGGGCGGGATCGAGCCGGGCATCAGTGAAATTGTCAAGGCTTTTGCAGA 134
BSNT_02113___ 159 --TCGATGCTCCATCTATTTGTTTGAGGGTGTAAAACAGCGAAACAAT-C 205
.||.| ||..|.|||||.||.||.||..|.|||..|||...|||| .
BL03837___yjq 135 GGGCGCT--TCGGTTTATTTATTGGAAGGATTGAAAAGGCGCGGCAATAA 182
BSNT_02113___ 206 GTTCCTTGCATCTCACCAGCATTCGTTTTGA-TGAGCCGCTGGCTTTAGA 254
|..|||| |||.|.||.|||..||.|||||| || .|||||.||.||
BL03837___yjq 183 GAGCCTT-CATGTGACAAGCGCTCATTTTGACTG-CCCGCTTGCCTT--- 227
BSNT_02113___ 255 AAAAGTGAATGCC-------CACCATTACGCATTAGCGTTTCACGGGTAT 297
|.|||||.| ||||..|||..|.|.||.||||||||||||
BL03837___yjq 228 ----GCGAATGGCTGCAGGACACCGGTACATACTGGCTTTTCACGGGTAT 273
BSNT_02113___ 298 TATGATCCAAACATCC----CG-CATACTTTGGTCGGCGGGGCTGATCGA 342
.|.||.|| |.| || |||||..|..||||.|||.|.|||||
BL03837___yjq 274 GAGGAGCC-----TGCTCATCGACATACGCTCATCGGAGGGACAGATCG- 317
BSNT_02113___ 343 AAAAAAGCCAAGCTCATT--TGT-----GAG-CGTCTGAATGAAG--CGG 382
|||.| ||.|.|| ||| ||| |.|..|| ||.| |||
BL03837___yjq 318 ----AAGGC--GCGCCTTGATGTTTAAGGAGACATTGGA--GAGGCACGG 359
BSNT_02113___ 383 GTTTTAGC-GCCGAGCTAACTAATGAGAAAGACCGCCTGGCAGGTGTACA 431
.|||| | ||.|||||..|...|||.|..|.|...||..|||||..|.|
BL03837___yjq 360 ATTTT--CTGCGGAGCTGGCGGCTGAAAGGGGCTATCTTTCAGGTACAAA 407
BSNT_02113___ 432 CC---CAAGCAATATTGTCAATCG--GACGAA-------AAGAGAAATGG 469
|| ||||| ||...|||||| |.|.|| |||.|
BL03837___yjq 408 CCCTGCAAGC---ATCAACAATCGCTGCCAAACCGGTTTAAGCG------ 448
BSNT_02113___ 470 GGCTGCAATTGGAGGTGAGCACGGCACAAAGAAACGCGCTGTTCT--GCA 517
|||||||.||..|.|||||.||.||..|.||.|||.|||| | |||
BL03837___yjq 449 ---TGCAATTTGAAATCAGCACAGCCCAGCGGAAGGCGATGTT-TGAGCA 494
BSNT_02113___ 518 ATT----TT----GGGTGCCGTGATAAAAG-CTACATACAAAACGACTTG 558
||| || ||..|.|| ||.| || |||||.||..||
BL03837___yjq 495 ATTCACATTAAAGGGCAGGCG-----AACGTCT-----CAAAATGAGGTG 534
BSNT_02113___ 559 TTTGATCGATATGTGGAAGCCGTCAAGCTTG--GCTTTTAT-ACATAA-- 603
|||...||.|||||..||||..|.|||...| ||.|..|| .||||.
BL03837___yjq 535 TTTTCCCGCTATGTCAAAGCTTTGAAGGAAGGAGCATGCATCGCATATGG 584
BSNT_02113___ 603 ---------------------- 603
BL03837___yjq 585 GCCGAGTGCAGCCGGCAGCTGA 606
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