Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02136 and BL03825
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_02136___xkdH.1.5803.seq
# -bsequence dna-align/BL03825___yqbH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02136___xkdH-BL03825___yqbH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02136___xkdH-BL03825___yqbH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02136___xkdH
# 2: BL03825___yqbH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 401
# Identity: 231/401 (57.6%)
# Similarity: 231/401 (57.6%)
# Gaps: 88/401 (21.9%)
# Score: 593.0
#
#
#=======================================
BSNT_02136___ 1 ATGAGCTACAGGCAGATGCTCATT----CATCGCTGCGACATTTATCAT- 45
|||||||| ||.|.|.|.||| .|.||||||||.||.||||||
BL03825___yqb 1 ATGAGCTA----CAAAAGGTTATTAAGCGACCGCTGCGATATCTATCATT 46
BSNT_02136___ 46 -----GAAG--CAGCGC-----AAGCGCCGTCTGCAGGCCGATTTGGGAT 83
|||| ||| || |||| .||| |..||.||
BL03825___yqb 47 TAAAGGAAGACCAG-GCTGAGGAAGC--------AAGG----TACGGCAT 83
BSNT_02136___ 84 TCCGGC---AGACAGGCTGCAGCCGGTGATT---TCATATCCGGATACAC 127
|||.|| |||| |||||||| |||| .||||...|||.||||
BL03825___yqb 84 TCCTGCGCGAGAC---CTGCAGCC---GATTCGCACATACGGGGAAACAC 127
BSNT_02136___ 128 CCGATGAACAAGATGTCCCTTGTTATTTTACCGAAAAAACACAGCAGCTG 177
|.|||...|||.|.||.||.||.||||||||.|||||||..|||..|.|.
BL03825___yqb 128 CTGATCTTCAAAACGTTCCCTGCTATTTTACGGAAAAAAACCAGTCGATC 177
BSNT_02136___ 178 ATTCAGGAGGAGCCGGATCAAACTGTATATCATAGCTTTCTCGTCCATTT 227
.|.|||.|.||.||.||.||...|.|.||||||...|.|.|.|.||||||
BL03825___yqb 178 GTCCAGCAAGATCCCGAACAGGTTATTTATCATTCATATTTGGCCCATTT 227
BSNT_02136___ 228 TCCGTTGTCAGCGGA--CA----TCCGCGTGAACGATAAAATCATTTGGG 271
|||| ||||| || |.|||.|..|||||||.....|.|||
BL03825___yqb 228 TCCG------GCGGAGGCAGATGTGCGCCTTCACGATAAGGCGGTCTGG- 270
BSNT_02136___ 272 AGAATCATAAA----------TATATACTAAAGCTGCCGAAAAGGATCA- 310
|| ||.|..||..|||.||||...|..||||
BL03825___yqb 271 ---------AACGGTGTCGCCTACACGCTGCAGCAGCCGCGCAACATCAA 311
BSNT_02136___ 311 --GACATCA--TCATTGGGAGGTCGTCGCAGTCAGGGATGAAAGCCTATG 356
|.||||| || ||.||..|.||.|||||||||||||..|||||
BL03825___yqb 312 AGGCCATCACCTC-----GAAGTGTTAGCGGTCAGGGATGAAAAACTATG 356
BSNT_02136___ 357 A 357
|
BL03825___yqb 357 A 357
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