Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02138 and BL03823
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_02138___xkdI.1.5803.seq
# -bsequence dna-align/BL03823___xkdI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02138___xkdI-BL03823___xkdI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02138___xkdI-BL03823___xkdI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02138___xkdI
# 2: BL03823___xkdI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 528
# Identity: 337/528 (63.8%)
# Similarity: 337/528 (63.8%)
# Gaps: 81/528 (15.3%)
# Score: 929.0
#
#
#=======================================
BSNT_02138___ 1 ATGAAAATAGCGGGATTGAAACAGCTG-----AACACGGCATTAAAAGAA 45
||||||||....||||||||||||||| .||.|.|.| |||||.|
BL03823___xkd 1 ATGAAAATCAAAGGATTGAAACAGCTGTCGCAGACGCTGGA--AAAAGCA 48
BSNT_02138___ 46 GCGGCTTCAG-GCGGTTTTTCCAGA-CAGGCGTCCCGGTGGCTTGAGGAG 93
|.| ||| |||| .||||.|.| .|.||..||..|||||||||..||
BL03823___xkd 49 GGG----CAGAGCGG-CTTTCGAAATGAAGCTGCCAAGTGGCTTGAACAG 93
BSNT_02138___ 94 TGCGGGCAA--GATTTTCTGGAGATCGTCCAATCT---GAACTCATCAGC 138
||||| || ||||||.||||..|.||| |.| |||.||.|..||
BL03823___xkd 94 -GCGGG-AACCGATTTTTTGGACCTGGTC---TGTGACGAAATCGTGCGC 138
BSNT_02138___ 139 ACACAAACGATTGATACAGAAAAACT-----GCTCAGTTCCTTTGA---- 179
.|...|.||||||||||.|..|..|| ||| ||||.|
BL03823___xkd 139 GCCGGATCGATTGATACCGGCAGCCTTTTGCGCT------CTTTCAAGCG 182
BSNT_02138___ 180 -------GAAAGGCGCAG--AGGACAATCTCTGGATTGTGCAAAGCGGCG 220
|||.||..||| .||| |||| .|||..||||
BL03823___xkd 183 GGGAGCCGAAGGGAACAGGTGGGA-AATC-----------GAAAAAGGCG 220
BSNT_02138___ 221 GGCTTTCGCTTGAGGTGGGGACACAGCTTGATTACGCCTCATTTCTTAAT 270
|.||..|||||||.||.|||||..||.|.||.||||||||||||.|.|||
BL03823___xkd 221 GACTCACGCTTGAAGTCGGGACGGAGTTAGAGTACGCCTCATTTGTAAAT 270
BSNT_02138___ 271 GACGGCCATTGGAC-GTC--AAAACAAGATGTGAGATGGGTGCCGGGGCG 317
|||||||||||||| |.| ||||.|.||.||.||.|||||.|||||.|.
BL03823___xkd 271 GACGGCCATTGGACAGGCGGAAAAGACGAAGTCAGGTGGGTTCCGGGACA 320
BSNT_02138___ 318 TTTTCAAGGCTCACGGTTTATTTATGATCCAGCGGCTTCAACG---GGAA 364
.|..||.|||...||||||...|||||||| ||| ||||.|| ||.|
BL03823___xkd 321 ATGGCACGGCGGCCGGTTTCAATATGATCC--CGG-TTCATCGTCCGGCA 367
BSNT_02138___ 365 TGGCGCTCAAGA-GAAAATGGATACCGGGAACGGGCTACTGGGATCATGC 413
|||| ||.||.| |..|||||.||..||||||.|||||.|||||.|||||
BL03823___xkd 368 TGGC-CTTAAAACGGCAATGGGTAAAGGGAACAGGCTATTGGGAGCATGC 416
BSNT_02138___ 414 ACTGCTTT---TATATGAACAGCTGTTTGAAAAATCGTTGGAAAGCAAA- 459
||||| |||.|||.|...|.||||||||| ||...|||.| |||
BL03823___xkd 417 ---GCTTTACATATTTGAGCGTTTATTTGAAAAA-CGCCTGAATG-AAAG 461
BSNT_02138___ 460 -CTGCGCCAGTGGCTGAAGAAGCTGTAA 486
||||...|.||||||||....||.|||
BL03823___xkd 462 GCTGCAAAAATGGCTGAATTCCCTTTAA 489
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