Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02155 and BL03812
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:39
# Commandline: needle
# -asequence dna-align/BSNT_02155___xkdT.1.5803.seq
# -bsequence dna-align/BL03812___xkdT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02155___xkdT-BL03812___xkdT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02155___xkdT-BL03812___xkdT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02155___xkdT
# 2: BL03812___xkdT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity: 736/1116 (65.9%)
# Similarity: 736/1116 (65.9%)
# Gaps: 141/1116 (12.6%)
# Score: 2235.5
#
#
#=======================================
BSNT_02155___ 1 ATGTTTGAAGATCAGACTTTTGAAGCGATTATGGAGCGTATGC-TGAACA 49
|||||||||||.|||||.|||||||.|||.|||||.||.|||| |||.|
BL03812___xkd 1 ATGTTTGAAGACCAGACATTTGAAGAGATCATGGAACGCATGCTTGAGC- 49
BSNT_02155___ 50 GCATTTCCGCAGATATTGACACAAGAGAAGGCAGCGTCATTTATAATGCG 99
|..||||.|..||.|||||||.|.|.|||..|||||||||||..||||||
BL03812___xkd 50 GGGTTTCAGATGAGATTGACAAACGTGAAAACAGCGTCATTTGGAATGCG 99
BSNT_02155___ 100 TTAGCCCCGGCGGCGGCCGAGCTTGCGAAGTCTTATATATGGCTGGATAC 149
.|.||||||||.||.||||||||.|||...||||||||.|||||.|||..
BL03812___xkd 100 CTTGCCCCGGCAGCCGCCGAGCTGGCGCTTTCTTATATTTGGCTTGATCA 149
BSNT_02155___ 150 TGTGCTTGAGCTCGTTTTTTCTGATACCGCACAAGGCGAATTTTTAGACA 199
.|||||..|..|.||||.|.|.|||||.||..|||||||||.|||.||||
BL03812___xkd 150 AGTGCTGAATTTGGTTTATGCGGATACGGCTGAAGGCGAATATTTGGACA 199
BSNT_02155___ 200 GGCGTGCAGCGGAAGCGGGAATTGAACGGACAGCC------GCGACAAAG 243
|..|.||.||.||.||.||..||||.|| | |||.||||.
BL03812___xkd 200 GAAGGGCGGCTGAGGCCGGTCTTGAGCG------CTATCGGGCGTCAAAA 243
BSNT_02155___ 244 GC-----GGTCAGAGCGGGAGAGTTTACATCTGGAGTTACTATTCCTGTC 288
|| |||| .||||.| |||||...||||||..|..||||...|
BL03812___xkd 244 GCCATATGGTC--TGCGGCA---TTTACGGATGGAGTATCGGTTCCCCCC 288
BSNT_02155___ 289 GGCTCCCGCTT-TTACGTGGATAATCTTTATTTT-CAAT------ATACG 330
||..||||.|| ||.| ||||..||.|.|||||| |.|| |.|||
BL03812___xkd 289 GGAACCCGTTTCTTTC-TGGAAGATTTATATTTTACCATGCTCGAAGACG 337
BSNT_02155___ 331 GCAGACGGGACACTCATCTGTGAAACACCTGGTGA-AGCAGGAAACGCCA 379
|||..|.||| .|||||||||.|.|| || |..|||||||||||
BL03812___xkd 338 GCAAGCTGGA-------ATGTGAAACAGCCGG-GACAAAAGGAAACGCCA 379
BSNT_02155___ 380 ATCTGACCGGACGCAATTTACTGTCATTGGATACCATTCCCGGTTTAGAA 429
||.|..|.||.||...|||.||..|..|.||||||||||||||..|.|||
BL03812___xkd 380 ATTTTTCGGGGCGGCCTTTGCTTCCGCTCGATACCATTCCCGGGCTTGAA 429
BSNT_02155___ 430 A---CGGCCATAGTCAAAGAAATCCTG--ATTCCGGGACGCGAGGAAGAG 474
| |||..||.| |||..|.|| |||||.||.|||||.||.|||
BL03812___xkd 430 AAAGCGGTTATGG-----GAAGCCTTGAAATTCCCGGCCGCGACGAGGAG 474
BSNT_02155___ 475 GGAGATGACAGCTTGCGAGAACGGTATTTTACAAGGGTTCGGCGT----- 519
...|||||...|.||...|||.|||||||.| ||.||||
BL03812___xkd 475 ACGGATGAATCCCTGTATGAAAGGTATTTAA-------TCCGCGTCCGTA 517
BSNT_02155___ 520 --GAGGCCGTCAGTGCCAATAAAATGCATTATAAAGAGTGGGCTGAGGAA 567
||.||.|||||.||.|||.|..|||||||.|||.|.|||||.||.|||
BL03812___xkd 518 GGGAAGCGGTCAGCGCGAATCAGCTGCATTACAAACAATGGGCCGAAGAA 567
BSNT_02155___ 568 GTGGACGGTGTGGGAAAGGCAAAGATCTTCCCGCTTTGGAACGGTGAAGG 617
||||||||.||.||.||.||.|||.||||.|||||.|||||.||.||.||
BL03812___xkd 568 GTGGACGGCGTAGGCAAAGCGAAGGTCTTTCCGCTGTGGAATGGCGAGGG 617
BSNT_02155___ 618 CACGGTCAAAATTGTCGTCACGAATGCGAATCTTGAGCC---------CG 658
.||.||.||..|||||.|.||.||.|||||..|.||||| ||
BL03812___xkd 618 AACCGTAAAGGTTGTCATTACAAACGCGAAAATGGAGCCAGCCACAGACG 667
BSNT_02155___ 659 CTTCTCCTATTTTAATTCAAAAAGTGAAAGATTATATCGACCCTGAACCA 708
| .|||||..|||.|||.||..|.||||||||.||.||.||
BL03812___xkd 668 C---------ATTAATCGAAAGAGTCAAGCAGTATATCGATCCCGATCC- 707
BSNT_02155___ 709 GGGCA---GGGAGAGGGACAGGCGCCAATCGGAGCCGTTGT--CACAGTG 753
||||| |||| |||.| .||||||.|||||||| ||.| |.|.||.
BL03812___xkd 708 GGGCAAAGGGGA-AGGTA-TGGCGCCGATCGGAGC--TTATACCGCGGTT 753
BSNT_02155___ 754 GAAAGCGCGGTCTGGAAGGAAGTTGAG-ATTTCTGCCGAAGTGCTCCCTG 802
|||||||||||.|||||.||.| |||| ||.|||||..||.|..|.||||
BL03812___xkd 754 GAAAGCGCGGTATGGAAAGACG-TGAGCATATCTGCAAAAATCATACCTG 802
BSNT_02155___ 803 AGATCAATC---ACTCAATTGAT-GAAGTGAAGTCA-----GAAATTG-A 842
| ||||..| || ||| | ||||.|.|| ||||||| |
BL03812___xkd 803 A-ATCAGGCCGGAC------GATCG--GTGAGGCCAAACAGGAAATTGCA 843
BSNT_02155___ 843 GGAAGGCGTTTTGAATC-------TCTTTAAGAAAATGGCGTTTGAAGAT 885
|.|| .|||| |.|||||..|||||||.|||.||||.
BL03812___xkd 844 GAAA--------AAATCACTGAATTATTTAAAGAAATGGCTTTTAAAGAA 885
BSNT_02155___ 886 AACGTCATCCGCCTTTCTCAAATTAACAATATCGTCTATAATTCACCATC 935
|.|||||||||.||.||.||.||.|||||.||..|||||.|.||..|.||
BL03812___xkd 886 AGCGTCATCCGTCTCTCGCAGATCAACAACATGATCTATGAATCGTCCTC 935
BSNT_02155___ 936 AGTCAGTGACTACTC--CAATATTCAAATCAAC-GGCACGTCTGAAAATC 982
.|||||.|||||.|| .|.|.||| |||||| ||.|.| |..||||||
BL03812___xkd 936 TGTCAGCGACTATTCGGAAGTCTTC--ATCAACGGGGAAG-CGAAAAATC 982
BSNT_02155___ 983 TGGTGCTGAGCGACGTGGAAATTCCTAAGCTTGGGCAGGTGAAGATCATT 1032
||..|.|||..||...|||||||||.|||||.||||||||||..||||||
BL03812___xkd 983 TGCAGTTGACAGAAACGGAAATTCCAAAGCTGGGGCAGGTGACCATCATT 1032
BSNT_02155___ 1033 GAGCAAACAAGA-TGA 1047
||| ||||| |||
BL03812___xkd 1033 GAG----CAAGATTGA 1044
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