Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01179 and BL03797
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01179___yesL.1.5803.seq
# -bsequence dna-align/BL03797___yesL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01179___yesL-BL03797___yesL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01179___yesL-BL03797___yesL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01179___yesL
# 2: BL03797___yesL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 703
# Identity: 430/703 (61.2%)
# Similarity: 430/703 (61.2%)
# Gaps: 137/703 (19.5%)
# Score: 1186.0
#
#
#=======================================
BSNT_01179___ 1 ATGATACACA-GTGTGGCAAATGGGCTGAATCGTTTTTGTACGTGGGTGA 49
|||||.|||| || ||||||||||..|..|.||.|||||...||||||||
BL03797___yes 1 ATGATTCACACGT-TGGCAAATGGATTTTACCGCTTTTGCGAGTGGGTGA 49
BSNT_01179___ 50 TGAGATTGGCCTATTTGAATGTGCTTTGGATTTTGTTTTCTCTTGCAGGC 99
||.|..|.||||||||||||.||||.|||||....|||.|.||.||.||.
BL03797___yes 50 TGCGGCTTGCCTATTTGAATCTGCTGTGGATCGGCTTTACGCTGGCGGGA 99
BSNT_01179___ 100 CTGGTTGTGTTTGG----GCTGATGCCCGCTACTGCCGCGATGTTTACAG 145
..|||..|.||.|| || |||.||.||.|||||||||||..|.|
BL03797___yes 100 GCGGTCATCTTCGGTTTAGC----GCCGGCGACCGCCGCGATGTTCGCTG 145
BSNT_01179___ 146 TGGCGAGAGAATGGGCGAAGGGGAATACAGATGCCCCGGTGTTTTCTGTC 195
||.|.|||.|.|||.||..|||.||.||.||||.||||||| ||||.|.|
BL03797___yes 146 TGACTAGACAGTGGACGCTGGGAAAAACGGATGTCCCGGTG-TTTCAGAC 194
BSNT_01179___ 196 -TTTTTTCGGACGTTTAAAAAGGAATGGCGGGC---ATCACAGATCCTCG 241
|||||||||.|||||||||||.||| |||| |||| || ||
BL03797___yes 195 GTTTTTTCGGGCGTTTAAAAAGAAAT---GGGCCAAATCA-AG-----CG 235
BSNT_01179___ 242 GGCTTATCGTTGTGA-------------CGGCTGCCCTGTTTCTGTTTGC 278
||.|||.|.||| ||||| |.||.|||||||.
BL03797___yes 236 ---TTCTCGGTTTGATATTGGGTCTGGTCGGCT----TATTGCTGTTTGT 278
BSNT_01179___ 279 GGATATGCGGATAGCGGC---------TCA-GATGGACCAGCCTGTGCTC 318
.|||.|.|.|||.||||| ||| ||| |||||.|||.|
BL03797___yes 279 TGATTTTCAGATTGCGGCCGTCTATTTTCACGAT----CAGCCAGTGTT- 323
BSNT_01179___ 319 GTCAATGTATTCCTGAGCATTAGTTTGATTTTCGCGTTTGTTGTGCTGTA 368
|.||..||||..|||.||||||.||.|| .|.||
BL03797___yes 324 -----TTTAAGCCTGTTCATCAGTTTGTTTATC------------ATTTA 356
BSNT_01179___ 369 TG---TGTTCCCGGTA-----TTTTCTCATTT--TG------ACG---TA 399
|| |..|||...|| ||||| ||.|| || ||| ||
BL03797___yes 357 TGCCATCATCCTCTTATACGCTTTTC-CAATTGATGTCCACTACGATTTA 405
BSNT_01179___ 400 AAAATAAGAGAGGTGCTGAGCAT-CAGCTTTTTCATTGCCTTCAGCCGTC 448
|||...|..|..||||||| .|| ||||||..||||.|.|||...|||||
BL03797___yes 406 AAACGGATTGCAGTGCTGA-AATACAGCTTCATCATCGGCTTTTCCCGTC 454
BSNT_01179___ 449 CGGCGGTGA---CGCTTTTGATGGCGGCGG----GCGCTGTCGGTGTGCT 491
||.|.| ||.||||.|| ||.| ||||..|.||..||.|
BL03797___yes 455 ---CGCTCACCTCGTTTTTCAT----GCTGATCAGCGCGTTTGGCATGAT 497
BSNT_01179___ 492 T-TGTCTCGTTCTGTTTCATGTCACGTTTCTATTGTTTTTCAGCGGGAG- 539
| || ||||.|.|.|||||||||||.|||||..|||||||||||||.||
BL03797___yes 498 TCTG-CTCGCTTTATTTCATGTCACATTTCTTCTGTTTTTCAGCGGCAGC 546
BSNT_01179___ 540 --TTTACTCAGCCTGATCTTAACGAAGCTGTCCTTTAAAGCGTTTCGGTC 587
|||| |||.|.||.||.||||||||.||.|||.|.||.||.||..|
BL03797___yes 547 GCTTTA---AGCTTCATTTTGACGAAGCTTTCGTTTCAGGCATTCCGTGC 593
BSNT_01179___ 588 AATGGATCAGCGGCAGGAGAAAGAA-AAGGCGGC---------------A 621
|||.|| |.|..||.|||.|.|.|| .||||.|| |
BL03797___yes 594 AATCGA-CGGGCGCCGGACAGACAAGCAGGCTGCCGCCCCACGCTTGAAA 642
BSNT_01179___ 622 TGA 624
|||
BL03797___yes 643 TGA 645
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