Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01182 and BL03795
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01182.1.5803.seq
# -bsequence dna-align/BL03795___yesN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01182-BL03795___yesN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01182-BL03795___yesN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01182
# 2: BL03795___yesN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1271
# Identity: 628/1271 (49.4%)
# Similarity: 628/1271 (49.4%)
# Gaps: 445/1271 (35.0%)
# Score: 1599.0
#
#
#=======================================
BSNT_01182 1 ATGTATAAAATACTGCTGGCTGATGATGAGAGGATTATTCTTGATGGAAT 50
|||||||||.|.|||.||||.||.|||||..|||||||||||||.||.||
BL03795___yes 1 ATGTATAAAGTGCTGTTGGCGGACGATGAACGGATTATTCTTGACGGCAT 50
BSNT_01182 51 GGCGGGAATCATTGAGTGGGAGTCGCTTGGCGCCTCATTGATCGGAAAAG 100
..|..|.||.||.||||||.|.|||.|.||..|.||.||||||||....|
BL03795___yes 51 CTCCAGCATGATCGAGTGGAATTCGTTCGGGACGTCTTTGATCGGGGCCG 100
BSNT_01182 101 CGCAGAACGGACATGAAGCATA-----TGAAAAGATTATACATAAGCAGC 145
|.||||||||...|||.||.|| | ||||||..|.||||.||
BL03795___yes 101 CACAGAACGGGATTGATGCTTACCGCCT-----GATTATGGAAAAGCGGC 145
BSNT_01182 146 CGAATATCGTCATCACAGACATCAAAATGCCCGGCATGGACGGGCTTGAG 195
||.|.||.||.||||..||.||.||||||||.||.||||..|||||.||.
BL03795___yes 146 CGGACATTGTGATCAGCGATATTAAAATGCCTGGGATGGGAGGGCTCGAA 195
BSNT_01182 196 CTGATCAAAAAGGTGTCAGCCGTCAGCCCGTCGGTGCAATTTATCGTCCT 245
||||||.||||.|||||...||.|..||||||..|.|..|||||..|.||
BL03795___yes 196 CTGATCGAAAAAGTGTCCCGCGACCACCCGTCAATCCGGTTTATTTTGCT 245
BSNT_01182 246 GTCCGGGTTTGGAGAGTTTGAGTACGCAAAGGAAGCCATGAAATATGGGG 295
|.|.||.||.||..|||||||.||.|||||..||||.|||..|||.||.|
BL03795___yes 246 GACGGGCTTCGGCCAGTTTGAATATGCAAAAAAAGCGATGTCATACGGAG 295
BSNT_01182 296 TGAAGCATTATTTGCTGAAACCCTGCAATGAACAG-CAGATTATCAG-CT 343
|.|.||||||||||||.||||||||||||| |.|| ||.|||| ||| .|
BL03795___yes 296 TCAGGCATTATTTGCTCAAACCCTGCAATG-AGAGCCATATTA-CAGATT 343
BSNT_01182 344 CGCTGGAGGAAA---TCATTGCTGAGCTG----AAGCGGCAAGATGTGCA 386
|||| ..||| |.||.|..|||||| |||.|| .||..||.
BL03795___yes 344 CGCT---TCAAAGCGTGATCGGCGAGCTGAAAAAAGAGG---AATCGGCG 387
BSNT_01182 387 CAAAAA--GAAAACAGCCCATCTGAAACACGAGCTCGACCATATCCG-TT 433
|||||| ||||| ||.||||| |||.| ||..| |.||| .|
BL03795___yes 388 CAAAAAGTGAAAA---CCGATCTG------GAGAT-GATGA-AGCCGCAT 426
BSNT_01182 434 CCTTTGCAGCCGATCAATACTTGGAAG-GCTTGATCGCCGGTGTGGCCCA 482
|.|.||.|||.||| .||..||| || |||||.||||.|
BL03795___yes 427 CTTATGAAGCAGAT-----GTTAAAAGAGC-TGATCACCGGAG------- 463
BSNT_01182 483 GCTGTCTC----------CGCCGCCTTCACTT---------GCCGGAAAA 513
||.|..|| || .||||.|.||| || ||
BL03795___yes 464 GCGGCATCGAGGATGAAGCG-TGCCTGCGCTTTTTTTCAGAGC-----AA 507
BSNT_01182 514 AAG---ATCCGCCTCTTGATCTT--------------------------- 533
||| |||.|.| |||||.|
BL03795___yes 508 AAGGCCATCAGGC---TGATCCTGTTTTCCGTCCGGGACGGGGAGGATAA 554
BSNT_01182 534 ---------AAAAGGGGAACAATCTATTG---------------ATGCTG 559
|.||||.|...||||.|||| |.|.||
BL03795___yes 555 AGATTATGCACAAGGCGTTGAATCCATTGCGGATGAGGTGCTGAACGGTG 604
BSNT_01182 560 CAGCCAGAGAGGCACTCGGGTCGGCACTG--ACAGCAGTT---------T 598
|.|.|| |||..|||||.|.| .|||||.|| |
BL03795___yes 605 CTGTCA---------TCGCCTCGGCCCGGGTTCAGCAATTGCTTGTCTGT 645
BSNT_01182 599 GCAGCAG-CGGAGAATGGACCGTACTCGCCG---TAGAGGAGAACGCCGC 644
||||.|| ||||..||.|.| |.|| ||.| |.|||||.|| ..
BL03795___yes 646 GCAGTAGACGGAACATTGGC--TTCT-GCTGTGCTTGAGGAAAA----AA 688
BSNT_01182 645 TGAAAAGGTGGCG-----GAGGTTT--------TTGC-CCG-------CA 673
|||||| ||| |||.||| .||| ||| |.
BL03795___yes 689 TGAAAA----GCGTCCAAGAGCTTTCACGCCGCCTGCTCCGATTTGAACC 734
BSNT_01182 674 AGATGGCCATCAGTCAG-----GCGG--------GAGAA--CTCCG---- 704
|||.| |||||.|||| |||| |.||| |||||
BL03795___yes 735 AGAAG--CATCACTCAGCGAAAGCGGCAATATCAGCGAAGCCTCCGCGAT 782
BSNT_01182 705 GCACG-CGGGGCAGCTGT------TTCGTGACACAGCTGAAGCGTCTGGT 747
|.||| ...|||| |.| .|||| |..||.||||| .||.
BL03795___yes 783 GTACGAAAAGGCA--TATAGAAAGATCGT--CCAAGATGAAG----GGGA 824
BSNT_01182 748 GACCTGC-------ATGGGAGCGCAG------TGAT---TTCGAAAATGA 781
|||.| | ||.||| || |||| .|||||||.|
BL03795___yes 825 GACAT-CGGTTTTAATCGGA----AGGATGCTTGATCTCATCGAAAAGG- 868
BSNT_01182 782 TCAGGCTTATTGCCGACGAGCTCGGAAATCCGAATCTGTCCTTAAAATGG 831
|||| ||| |||||||||.||.||..||||.|||
BL03795___yes 869 --AGGC--------------CTC--AAATCCGAAGCTTTCGCTAAAGTGG 900
BSNT_01182 832 GCGG--CGAAGGATATGTTGTTTATGAATCCTGATTATCTCGGGAAATTA 879
||.| ||.| |.|||.|||.|||||||||.|||||||||||.||..|.
BL03795___yes 901 GCAGCCCGCA--ACATGCTGTATATGAATCCGGATTATCTCGGCAAGCTG 948
BSNT_01182 880 TT-----AGGAAACAGGCGAGAAATTTTCCCAA--TATGTTACACGAGTG 922
|| |||||||.||.|||||.|||| ||| |||||..||...|||
BL03795___yes 949 TTTAAACAGGAAACCGGTGAGAAGTTTT--CAAGCTATGTCGCAAAGGTG 996
BSNT_01182 923 CGTCTTGA------------------------------------------ 930
||..|.||
BL03795___yes 997 CGCATCGAAAAAGCGATCGCGAAGATGAAGAAGTCTAAAAACACGGCCAT 1046
BSNT_01182 930 -------------------------------------------------- 930
BL03795___yes 1047 CGGCACGCTGGCAGAGGAACTGGGGTTTGGCCACAATCCAAAATACTTCA 1096
BSNT_01182 930 -------------------------------------------------- 930
BL03795___yes 1097 GCCTTGTCTTTAAAAAATACACGGGACTCACCCCGTCAGAATTTCGAAAA 1146
BSNT_01182 930 --------------------- 930
BL03795___yes 1147 AAAGAAGACAACACGTTTTAA 1167
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