Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01184 and BL03794
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01184___yesO.1.5803.seq
# -bsequence dna-align/BL03794___yesO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01184___yesO-BL03794___yesO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01184___yesO-BL03794___yesO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01184___yesO
# 2: BL03794___yesO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1382
# Identity: 941/1382 (68.1%)
# Similarity: 941/1382 (68.1%)
# Gaps: 184/1382 (13.3%)
# Score: 3064.5
#
#
#=======================================
BSNT_01184___ 1 TTGAAT---AAGATTTGTTACGTGCTGTTATCCCTTGTCTGCGTCTTTT- 46
|| ||||||||| || ||.||.||| ||.|..||||
BL03794___yes 1 ----ATGAGAAGATTTGT---GT----TTGTCTCTT---TGTGCATTTTG 36
BSNT_01184___ 47 -------------TGTTCAGCGGAT---GTTC-AGCAGGTGAAGAGGC-- 77
|||| ||||| |||| |.|| .|||||||||
BL03794___yes 37 CTGACGCTCGGCCTGTT---CGGATGCAGTTCAAACA-CTGAAGAGGCGG 82
BSNT_01184___ 78 --------CTCGGGAAAAAATGAAGACGTTACACTCAGAATCGCGTGGTG 119
..|||.||||| |||| |||||..|.||..||||.|||||
BL03794___yes 83 CCGGTGCGGACGGCAAAAA--GAAG--GTTACCTTAAGGGTCGCATGGTG 128
BSNT_01184___ 120 GGGCGGGCAGCCAAGGCATGATTATACAACAAAGGTAATTGAACTTTACG 169
||||||.|||||..||||||||||||||.||||..|.|||||.||.||
BL03794___yes 129 GGGCGGACAGCCTCGGCATGATTATACATCAAAAATCATTGAGCTGTA-- 176
BSNT_01184___ 170 AGAAAAAGA--ATCCTCACGTCCATATTGAAGCGGAATTTGCGAACTGGG 217
.|||||.|| ||||.||.|||.|.||.||||||||.||||||||.||||
BL03794___yes 177 TGAAAAGGAACATCCGCATGTCAAAATCGAAGCGGAGTTTGCGAATTGGG 226
BSNT_01184___ 218 ATGACTACTGGAAAAAGCTCGCGCCCATGTCTGCCGCCGGCCAGCTTCCG 267
|.||.||.|||||||||||.||.||.|||||.||.||.||.|||||.||.
BL03794___yes 227 ACGATTATTGGAAAAAGCTTGCCCCGATGTCCGCGGCAGGGCAGCTGCCC 276
BSNT_01184___ 268 GATGTCATTCAAATGGATACCGCTTACTTAGCCCAATACGGAAAGAAGAA 317
|||||.|||||||||||||..||.||.|||.||||||||||.|||||...
BL03794___yes 277 GATGTGATTCAAATGGATATGGCGTATTTATCCCAATACGGCAAGAAAGG 326
BSNT_01184___ 318 CCAGCTGGAGGATTTAACGCCGTAT-ACAAAGGATGGAACGATTGACGTC 366
||||||.||.|||.|.||.|||||| .|||| ||.||.|||| ||
BL03794___yes 327 CCAGCTTGAAGATCTGACTCCGTATGTCAAA-GACGGGACGA------TC 369
BSNT_01184___ 367 AGTTC--AATCGA-CGA-GAATATGCTGTCG------GGCGGAAAAATCG 406
|.|.| |||||| .|| |||.| |.|| |||||||||||||
BL03794___yes 370 AATACCGAATCGATTGATGAAAA----GACGATCAAAGGCGGAAAAATCG 415
BSNT_01184___ 407 ACAATAAGCTATATGGATTTACGCTAGGTGTCAACGTGCTGTCTGTGATT 456
...||.|||||||.||.||..||||.|||||.||.||.|||||.||||||
BL03794___yes 416 GTGATCAGCTATACGGCTTCCCGCTCGGTGTGAATGTACTGTCGGTGATT 465
BSNT_01184___ 457 GCCAATGAAGATTTGCTGAAAAAAGCCGGTGT---GTCTATCAAT--CAG 501
.|||||||.||.|||||.|||.||||.||.|| |..|..|.|| |||
BL03794___yes 466 ACCAATGACGACTTGCTAAAAGAAGCGGGCGTCGAGATTGACGATGGCAG 515
BSNT_01184___ 502 GAAAACTGGACGTGGGAGGATTACGAGAAGCTGGCGTATAATCTTCAGG- 550
||||||||||...||||..||.||.|||||| ||..|||
BL03794___yes 516 -----CTGGACGTGGACCGATTTTGAAAACCTGGCG------CTAGAGGT 554
BSNT_01184___ 551 ----AAAAAGCCGGTGTC--TACGGTTCCAACGGAATGCATCCGCCTGAT 594
.|.|||.||| |.| ||||||||.|||||.|||||||||||.|||
BL03794___yes 555 CGAAGAGAAGACGG-GACAATACGGTTCAAACGGCATGCATCCGCCCGAT 603
BSNT_01184___ 595 ATTTTCTTCCCTTATTATTTGCGCACAAAGGGTGAGCGCTTTTATAAAGA 644
.|.||.|||||.||.||..|..|.||.|||||.||||||||.||||||||
BL03794___yes 604 GTCTTTTTCCCGTACTACCTCAGGACGAAGGGCGAGCGCTTCTATAAAGA 653
BSNT_01184___ 645 AGACGGCACTGGCCTCGCGTATCAAGATGATCAGCTGTTTGGCGATTACT 694
.||||||||.|||||.||.|||..|||.||..|||||||||.||||||||
BL03794___yes 654 GGACGGCACAGGCCTTGCTTATTCAGACGACAAGCTGTTTGTCGATTACT 703
BSNT_01184___ 695 TTGAACGGCAGCTGAGGCT----GGTGAAAGCGAAAACGTCCCCAACACC 740
|..|.||||||.|||.||| |.|||| |||.|.||.||.||.||
BL03794___yes 704 TCAAGCGGCAGGTGAAGCTCGTCGATGAA----AAAGCTTCGCCGACGCC 749
BSNT_01184___ 741 TGATGAAAGCGCACAGATTAAAGGGATGGAAGACGATTTTATCGTCAAAG 790
||||||||||||.|||.|.||.||||||||||||||||||||||||||||
BL03794___yes 750 TGATGAAAGCGCGCAGGTGAAGGGGATGGAAGACGATTTTATCGTCAAAG 799
BSNT_01184___ 791 GC--AAGTCAGCGATTACATGGAACTACTCCAATCAATATTTG-GGC-TT 836
|| || |.||....||||||||.||.||.||||| .|||| ||| ||
BL03794___yes 800 GCCGAA--CCGCTGCAACATGGAATTATTCAAATCA--GTTTGCGGCGTT 845
BSNT_01184___ 837 TGCCCGGCTGACAGACTCGCCGCTGTCTCTCTATCTGCCGCCGGAGCAAA 886
.||.|.|||.||.||..||||.|||||..|..|.|||||.||.||.||..
BL03794___yes 846 CGCGCAGCTTACCGATGCGCCCCTGTCATTAAAGCTGCCTCCTGAACAGG 895
BSNT_01184___ 887 TGAAGGAAAAGGCGCTGACATTGAAGCCGAGTATGCTGTTTTCCATTCCG 936
.||||||||||||||||...||.|.||||||.|||||||||||.||||||
BL03794___yes 896 CGAAGGAAAAGGCGCTGTTTTTAAGGCCGAGCATGCTGTTTTCAATTCCG 945
BSNT_01184___ 937 AAAAGCTCTGAGCATAAAAAAGAGGCAGCGAAATTTATTAATTTCTTCGT 986
||||||||.||.||.||||||||.||.||...||||||..|.|||||..|
BL03794___yes 946 AAAAGCTCCGAACAGAAAAAAGAAGCGGCTGCATTTATCGACTTCTTTAT 995
BSNT_01184___ 987 GAATAATGAGGAAGCGAA--CCAGCTGATTAAAGGCGAGCGAGGCGTTCC 1034
.||.|||||..||||.|| || |||||.|||||.||..|||||||.||
BL03794___yes 996 TAACAATGAAAAAGCCAATGCC--CTGATCAAAGGAGAAAGAGGCGTACC 1043
BSNT_01184___ 1035 AGTCTCCGACAAGGTGGCGGATGCGATTAAAC--CGAAG------CTGA- 1075
.||||||..|||..|.|||| |||| .|||| ||||
BL03794___yes 1044 GGTCTCCTCCAAAATAGCGG--------AAACAGTGAAGTCAGAACTGAG 1085
BSNT_01184___ 1076 --ATGAGGAAGAAACCAACATCGTGGAGTATGTAGAA------ACCGCGT 1117
|.|||| ||||| ||.||..|.||.|||||.||| ||.|.||
BL03794___yes 1086 CGAAGAGG-AGAAA--AAGATTTTCGAATATGTCGAACGGGCTACGGAGT 1132
BSNT_01184___ 1118 CAAAAAACATCAGC----AAAGCCGATCCGCCAGAGCCTGTGGGAAGCGC 1163
|| || .||||.||.|||||.|||||..|..|.|||||
BL03794___yes 1133 ------AC----GCGGGAGAAGCGGAACCGCCTGAGCCGATCAGCAGCGC 1172
BSNT_01184___ 1164 GGAGGTCATCAAACTGCTGAAGGATACGTCAGATCAGATTCTGTATCAGA 1213
.||.||||||||.|||||.||.||.||||||||.||.|||.|||.|.|.|
BL03794___yes 1173 CGAAGTCATCAAGCTGCTAAAAGACACGTCAGACCAAATTTTGTTTAAAA 1222
BSNT_01184___ 1214 AGGTATCGCCGGAAAA---AGCCGCCAAAACGTTCCGGAAA-AAG----- 1254
||.|..||||.|||.| ||||||.|| ||||.|.||| |||
BL03794___yes 1223 AGATCACGCCTGAAGAAGGAGCCGCGAA---GTTCAGAAAAGAAGCGGAC 1269
BSNT_01184___ 1255 GCC--AATGAGATATTAGAGAGGAATAATTGA 1284
||| |.|||.| |||.|..||.|| |||
BL03794___yes 1270 GCCATACTGAAA----AGAAATCAACAA-TGA 1296
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