Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01186 and BL03793
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01186___yesP.1.5803.seq
# -bsequence dna-align/BL03793___yesP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01186___yesP-BL03793___yesP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01186___yesP-BL03793___yesP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01186___yesP
# 2: BL03793___yesP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity: 707/933 (75.8%)
# Similarity: 707/933 (75.8%)
# Gaps: 36/933 ( 3.9%)
# Score: 2699.0
#
#
#=======================================
BSNT_01186___ 1 TTGACGGGAAATGGGGCTGACGCAATGAAAAAAAGCCGGAGTATAAGAAA 50
.|||.|| ||||||| |||||.
BL03793___yes 1 ----------------GTGAAGC---GAAAAAA-----------AAGAAT 20
BSNT_01186___ 51 AGACAATCTGGCGGGATATGCTTTTATTTCTCCGTTTATCATCGGGTTCC 100
.||||||.|||||||.|||||.||||||||.||||||||.|||||.||..
BL03793___yes 21 TGACAATTTGGCGGGTTATGCCTTTATTTCCCCGTTTATTATCGGATTTT 70
BSNT_01186___ 101 TATGCTTTACGGTGATTCCGATGGGGGCGTCCCTGTTTCTGTCCTTCACG 150
|.||||||||.||.|||||||||||.||.||.|||||||||||.||.||.
BL03793___yes 71 TGTGCTTTACCGTCATTCCGATGGGAGCCTCGCTGTTTCTGTCTTTTACA 120
BSNT_01186___ 151 AGCTATGACTTGTTTACGGCGCCGAAATGGATCGGGCTCGACAACTTTAA 200
|||||.||..||||.||..||||.||||||.||||..|.|||||||.|||
BL03793___yes 121 AGCTACGATCTGTTCACCCCGCCCAAATGGGTCGGCTTTGACAACTATAA 170
BSNT_01186___ 201 GGAAATGTTTACGGGTGACGAAAAGTATTGGCAGTCTCTGAAGGTGACGT 250
||..|||.|.||.|.|||.|||||.||.|||...||.|||||.||.||||
BL03793___yes 171 GGCGATGCTGACCGATGATGAAAAATACTGGGGTTCGCTGAAAGTTACGT 220
BSNT_01186___ 251 TTACGTATGTGCTTGCCGGGGTTCCGCTCCGCCTCGGCTTCGCGCTTTTT 300
||...||.|||||.|||||.||.|||||.|||||||..||.||||||||.
BL03793___yes 221 TTTATTACGTGCTCGCCGGTGTGCCGCTGCGCCTCGCGTTTGCGCTTTTC 270
BSNT_01186___ 301 ATCGCTGTCATTTTAAACAATGCAGCAAAAGGAACGGCTATTTACAGAAC 350
|||||.||.|||||.||||..||.|.|||.||...||..||||||.|.||
BL03793___yes 271 ATCGCGGTGATTTTGAACAGAGCCGAAAAGGGTGTGGGCATTTACCGGAC 320
BSNT_01186___ 351 GCTCTTTTATCTGCCTTCGATCATCGGCGGGAGCGTCGCCGTGGCGATTA 400
||||||||||||.||.||.|||||||||||.|||||.||.||.|||||||
BL03793___yes 321 GCTCTTTTATCTCCCGTCCATCATCGGCGGCAGCGTGGCGGTTGCGATTA 370
BSNT_01186___ 401 TGTGGCGCAATATTTTTGGCAATGACGGGGTCATCAATGCGCTGCTGTTT 450
|||||||||||.|.||||||||||||||.||||||||||.|||..||||.
BL03793___yes 371 TGTGGCGCAATGTATTTGGCAATGACGGTGTCATCAATGGGCTTTTGTTC 420
BSNT_01186___ 451 TTTTTCGGGATTGATCAA-AAAATTCTTTGGTACCAGAATCCGACAAGTG 499
||..|.||..|||| ||| ||.|||.|||||||.|||.|.||||||||.|
BL03793___yes 421 TTCCTTGGTTTTGA-CAAGAAGATTTTTTGGTATCAGGACCCGACAAGCG 469
BSNT_01186___ 500 CGCTGTGGACATTGATTCTGCTGTCCGTCTGGCAGTTCGGGTCGTCAATG 549
|..|||||||.||||||||..||||.||.|||||||||||.||.||.|||
BL03793___yes 470 CATTGTGGACCTTGATTCTTTTGTCTGTGTGGCAGTTCGGCTCTTCCATG 519
BSNT_01186___ 550 CTGATTTTTCTGGCCGGGCTGAAAAACATTCCGTCTTCGTATTTGGAAGC 599
|||||.|||||.|||||..|||||||.||||||.|...||||..||||||
BL03793___yes 520 CTGATCTTTCTTGCCGGATTGAAAAATATTCCGCCGATGTATCAGGAAGC 569
BSNT_01186___ 600 GGCAAGTGTGGATGGGGCAAATCGGGTGCAGC-GTTTCTTCAAGATCACG 648
||||||.||.|||||.|||||..||.|.|||| ||||.||| ..||.|||
BL03793___yes 570 GGCAAGCGTTGATGGTGCAAACAGGTTTCAGCGGTTTTTTC-TCATTACG 618
BSNT_01186___ 649 CTTCCGATCCTTACACCGATTATTTTCTTTAATCTTGTGATGCAGACGAT 698
||.|||.|.||.|..|||||.||.||.||||||.|.|||||||||||.||
BL03793___yes 619 CTCCCGCTTCTCAGCCCGATCATCTTTTTTAATTTGGTGATGCAGACCAT 668
BSNT_01186___ 699 TTCTGCTTTTATGACATTTACACCTGCCTATATCATTTCGAAGGGCGAGG 748
|||.||.||.|||||.|||||.||.|||||.||.|||||.||.||.||.|
BL03793___yes 669 TTCAGCCTTCATGACCTTTACGCCGGCCTACATTATTTCAAAAGGGGAAG 718
BSNT_01186___ 749 GCGGGCCGCTTGACGGGACACTTCTCTATTCGCTCTATTTGTTCCAGCGT 798
||||.||||||||||||||.|||||.|||||.|||||||||||||||||.
BL03793___yes 719 GCGGTCCGCTTGACGGGACGCTTCTGTATTCCCTCTATTTGTTCCAGCGG 768
BSNT_01186___ 799 GCGTTTAACTATTTTCAAATGGGCTACGCATCGGCGATGGCGTGGGTCAT 848
|||||.||||.|||.||||||||||||||.|||||.|||||.|||||.||
BL03793___yes 769 GCGTTCAACTTTTTCCAAATGGGCTACGCTTCGGCTATGGCATGGGTGAT 818
BSNT_01186___ 849 GCTTGTCATTGTCGGGCTGATTACGCTCATATTGTTTAAAACATCGTCAT 898
|||..||.|..||||.||..|.||..||||||||||.|||||.||.||.|
BL03793___yes 819 GCTGATCCTGATCGGCCTTGTCACATTCATATTGTTCAAAACTTCATCCT 868
BSNT_01186___ 899 ATTGGGTTCATTACGAGTCAAAGGAGGAATGA- 930
..|||||.||||||||.||.|||||||..| |
BL03793___yes 869 TATGGGTGCATTACGAATCGAAGGAGGGGT-AG 900
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