Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01216 and BL03778

See Amino acid alignment / Visit BSNT_01216 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:44
# Commandline: needle
#    -asequence dna-align/BSNT_01216___lplA.1.5803.seq
#    -bsequence dna-align/BL03778___lplA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01216___lplA-BL03778___lplA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01216___lplA-BL03778___lplA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01216___lplA
# 2: BL03778___lplA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1565
# Identity:    1143/1565 (73.0%)
# Similarity:  1143/1565 (73.0%)
# Gaps:          97/1565 ( 6.2%)
# Score: 4076.5
# 
#
#=======================================

BSNT_01216___      1 ---------ATGAAAATAAGAATGCGAAAAAAATGGATGGCCTTG---CC     38
                              .||||..|  ||| |.||||.||.|||.|.||  ||   ||
BL03778___lpl      1 ATGGCAAGACTGAAGCT--GAA-GGGAAACAAGTGGCTCGC--TGCACCC     45

BSNT_01216___     39 GC-------TTGCTGCCATGATGATCGCCGGATGCA--GCCATTCGGAAA     79
                     ||       |||||.|     |.||   |||.||||  ||.|.|  ||.|
BL03778___lpl     46 GCTGTCTTTTTGCTCC-----TTAT---CGGGTGCAGTGCAAAT--GAGA     85

BSNT_01216___     80 CATCCAATTCAGCAAGCGATTCGAAA-------GATACGATCAAAATTAT    122
                     |.||.|| |||..|.|.||...||||       |||.|.||..|.|||||
BL03778___lpl     86 CGTCGAA-TCAAGACGGGAAAGGAAAAGAGAAGGATGCCATTCATATTAT    134

BSNT_01216___    123 GGCGCCGCTTTTATCGCCGGAAAGCCCGAGTGATAAGAGTCCTTCATTAA    172
                     |||.|||||..|.|||||||||||.|||.|.||.||.|||||.||.||||
BL03778___lpl    135 GGCTCCGCTCCTCTCGCCGGAAAGTCCGGGAGAAAACAGTCCGTCTTTAA    184

BSNT_01216___    173 AAGCGCTCGAAAAATACACAGGCAAAGAGATTAAGGTCACATGGGTGCCT    222
                     |||||||||||||||||||....|||.|.|||||.||.||||||||.||.
BL03778___lpl    185 AAGCGCTCGAAAAATACACGAAAAAACAAATTAAAGTGACATGGGTTCCG    234

BSNT_01216___    223 GATTCATCCTACAACGACAAATTCAACATCGTCATGGCTTCAGGAGAGAT    272
                     .|.||.|||||.||.||.||||||||||||||||||||.||.||.||..|
BL03778___lpl    235 AACTCTTCCTATAATGATAAATTCAACATCGTCATGGCCTCGGGGGATTT    284

BSNT_01216___    273 GCCTCACGCGATTATCATTAAAGATAAGTCAGCC-GGCTTTATCAAGTCT    321
                     |||.||.||.|||.||.|.|..||.||||| ||| ||.||||||||||||
BL03778___lpl    285 GCCGCAAGCCATTGTCGTCACGGACAAGTC-GCCGGGTTTTATCAAGTCT    333

BSNT_01216___    322 GTCAAAGCAGGGGCGTTTTGGGAGCTGTCTCCTTATTTAAAAGACTACAA    371
                     ||||||.||||.|||||.||||||||.||.||||||||||||||||||..
BL03778___lpl    334 GTCAAATCAGGCGCGTTCTGGGAGCTTTCACCTTATTTAAAAGACTACCC    383

BSNT_01216___    372 GAATTTAAGCCAGGCAGATGA-AAAGATTTTGAAGAACAGCTCGGTGAAC    420
                     |||..|..|..||||.||||| |||| |..||||||||||.||..|.|||
BL03778___lpl    384 GAACCTTGGAAAGGCCGATGAGAAAG-TGATGAAGAACAGTTCCATTAAC    432

BSNT_01216___    421 GGCGAGGTGTACGGAATCTACAGAACGAGGGATCTGATCAGGGCGTGTAT    470
                     ||||||.|.|||||.||.|||||..|||||||.||.|||.|.||.|..||
BL03778___lpl    433 GGCGAGATTTACGGCATTTACAGGGCGAGGGACCTCATCCGCGCTTCGAT    482

BSNT_01216___    471 GATCATCAGAACCGACTGGCTGAAAAATGTCGGTCTGGATATGCCGGAAA    520
                     .|||||||||||.||||||||..||||||||||.|||||.||||||.|||
BL03778___lpl    483 TATCATCAGAACGGACTGGCTCGAAAATGTCGGCCTGGAGATGCCGAAAA    532

BSNT_01216___    521 CGCTTGATGATTTCTATGAAGTGCTGAAAGCCTTTAAGGAAAAAGATCCT    570
                     |..|.||.||.||.||.||.||.||||||||.|||||.||||||||.||.
BL03778___lpl    533 CAATCGACGAATTTTACGACGTACTGAAAGCGTTTAAAGAAAAAGACCCC    582

BSNT_01216___    571 GACGGAAACGGCAAGGATGATACGTATGGCATGGTCGTGCCGAAATGGAT    620
                     |||||||||||.|||||.||||||||.||||||||.||.|||||||||||
BL03778___lpl    583 GACGGAAACGGAAAGGACGATACGTACGGCATGGTAGTCCCGAAATGGAT    632

BSNT_01216___    621 GGGACTCGGCAACGGAAGCCCATGGGATGTTCTGCAAATCTGGTTCGGCG    670
                     |||.||.||||||||.||||||||||||.||.||||.|..||||||||.|
BL03778___lpl    633 GGGGCTAGGCAACGGGAGCCCATGGGATATTATGCAGACATGGTTCGGTG    682

BSNT_01216___    671 CTCCGAACCGCTACGGTGTTG----AAAACGGAAAGCTGATTTCGGATTT    716
                     ||||.|||||||||||.||.|    ||||.||.|| ||.|||.||||.||
BL03778___lpl    683 CTCCAAACCGCTACGGAGTAGACGAAAAAGGGGAA-CTCATTCCGGACTT    731

BSNT_01216___    717 TACAAC-GAAGGAATACATGAATGCGCTCACGTTTTTT-AAAAAGCTCTA    764
                     .||||| ||| |||||.|||.|.||||| .|||||||| ||||||||.||
BL03778___lpl    732 CACAACAGAA-GAATATATGGAAGCGCT-GCGTTTTTTCAAAAAGCTGTA    779

BSNT_01216___    765 TGATGAGGGATTGATCAATAAGGACTTTGCTGTCATGGATTCTGCGAAGT    814
                     |||||||||..||||||||||.|||||.||.||.||||||||.|||||||
BL03778___lpl    780 TGATGAGGGGCTGATCAATAAAGACTTCGCCGTAATGGATTCAGCGAAGT    829

BSNT_01216___    815 GGAATGATCCGGTTGTGAAAGGAAAAGCGGGTGTCATCGTTGATACAGGC    864
                     ||||.||||||||.||.|||||.|||||.|||||.|||||.|||||.||.
BL03778___lpl    830 GGAACGATCCGGTCGTCAAAGGGAAAGCTGGTGTGATCGTCGATACCGGT    879

BSNT_01216___    865 TCAAGAGCGTCTCAAATCCAAAGCGCGATGGAGGAGGCTGAT----GAGT    910
                     ||..|.||.||.||.||.||||||||.||||||||.||.|||    ||  
BL03778___lpl    880 TCGCGGGCATCGCAGATACAAAGCGCAATGGAGGAAGCCGATCCCGGA--    927

BSNT_01216___    911 CGAACAAGGATATCATTGATATCGTCGGCTCGCTTGAGGGACCGAATGGC    960
                       |||||||||.|.||.|||.||.||||..||.|..|.||.|||||.||.
BL03778___lpl    928 --AACAAGGATGTGATCGATGTCATCGGAACGGTCAAAGGCCCGAAAGGA    975

BSNT_01216___    961 AAGCGCACCTTCCCGACATCTGGTTCTTCAGGCATGATCGCGATACCAAA   1010
                     |.|...||.|||||||||||.||.|...|.||.|||||.||.||.||.||
BL03778___lpl    976 ACGTATACATTCCCGACATCAGGATACGCCGGAATGATTGCCATCCCGAA   1025

BSNT_01216___   1011 ATCAAGCGTCAAAACCGAAAAAGAGCTGAAAGAGGTGCTGTCCTTCCTCG   1060
                     |.|.|||||||||||.||||||||.||.|||||.|||||...||||.|.|
BL03778___lpl   1026 AGCGAGCGTCAAAACGGAAAAAGAACTAAAAGAAGTGCTCGGCTTCTTGG   1075

BSNT_01216___   1061 ATAAGATGAATGACAAGGAAGCGCAGATTCTCACGAACAACGGAGTGAAG   1110
                     |.||.|||||.||..|.||.||.|||||..|..|.||.|||||.||.||.
BL03778___lpl   1076 ACAAAATGAACGATGAAGAGGCACAGATCATTGCCAATAACGGCGTAAAA   1125

BSNT_01216___   1111 GGCCGCAATTACGAGCTCAAGGACG--GCGTATTCACCTCACTTGAAAAA   1158
                     ||.|||||.||..||||..|..|||  |||||  |||.||.|||||||||
BL03778___lpl   1126 GGGCGCAACTATAAGCTTGAAAACGGTGCGTA--CACGTCCCTTGAAAAA   1173

BSNT_01216___   1159 AACAACAAATCTCTCCTGTATGAGCATGAAGG-CTTGGCACAGTTCAGCA   1207
                     |||||||||...||.||.||.|||||.||.|| ||| ||.||||||||||
BL03778___lpl   1174 AACAACAAAAAACTGCTTTACGAGCACGAGGGTCTT-GCGCAGTTCAGCA   1222

BSNT_01216___   1208 TGTCGATTCC-GAAAAGCGAGTATTACATCGAAGACCAGAAAACCAAGCT   1256
                     ||...||||| |||.|..|| ||.||..|.|||.|.||..||.|.|||||
BL03778___lpl   1223 TGGGCATTCCGGAACAAAGA-TACTATGTGGAAAAGCAAGAATCAAAGCT   1271

BSNT_01216___   1257 CTT------------CCAGCATCGCAAGGACATCATAACCGAAGGAGAAA   1294
                     .||            .|||..||||||            .|||||.||.|
BL03778___lpl   1272 GTTTAAACACCGTGAACAGATTCGCAA------------AGAAGGGGAGA   1309

BSNT_01216___   1295 AAATAGCGGTCTTTAACCCGGCTGAGTCGCTTGTATCTGATGTCTATACC   1344
                     ||||.||.||.||.||||||||.||.|||||.||.||.|||||.||.|||
BL03778___lpl   1310 AAATCGCCGTATTCAACCCGGCAGAATCGCTCGTTTCAGATGTATACACC   1359

BSNT_01216___   1345 CAAAAAGGAGCCCAGCTTGACAACATCATCCTCGACGCGAGAACACAATT   1394
                     ||||||||.||.|||||||||||||||||||||||.||.|.||||||.||
BL03778___lpl   1360 CAAAAAGGGGCACAGCTTGACAACATCATCCTCGATGCCAAAACACAGTT   1409

BSNT_01216___   1395 TATCATTGGAGAAATTGATGAAAAAGGGTTCGATGATGCGGTGGAGCTTT   1444
                     ||||||.||.||.||.|||||||||||.||..|.||.||.||.|||||||
BL03778___lpl   1410 TATCATCGGCGACATCGATGAAAAAGGCTTTCAAGACGCCGTTGAGCTTT   1459

BSNT_01216___   1445 GGAAAAAAAGCGGCGGCAATGAACTGATGAAGGACTTGAACAAATTGTAC   1494
                     ||.|.||||||||.|||.|.||..|||||||.||..||||||||...|||
BL03778___lpl   1460 GGTATAAAAGCGGGGGCGAAGATTTGATGAAAGAACTGAACAAACGCTAC   1509

BSNT_01216___   1495 CAATCGTCAAAATAA   1509
                     .|...|.|.|||||.
BL03778___lpl   1510 AAGGAGACTAAATAG   1524


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