Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02189 and BL03764
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_02189___ykfC.1.5803.seq
# -bsequence dna-align/BL03764___ykfC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02189___ykfC-BL03764___ykfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02189___ykfC-BL03764___ykfC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02189___ykfC
# 2: BL03764___ykfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 978
# Identity: 596/978 (60.9%)
# Similarity: 596/978 (60.9%)
# Gaps: 177/978 (18.1%)
# Score: 1523.5
#
#
#=======================================
BSNT_02189___ 1 ATGATGCACACTGTCATA--TCAG------CAGTGGCCAACATCTGGA-C 41
|||| || || |.||| .||| ||||.|||||..|||||| |
BL03764___ykf 1 ATGA-GC---CT-TTATACGACAGCCGTCTCAGTCGCCAATGTCTGGACC 45
BSNT_02189___ 42 AGCGCCTGATTCACCGCGCCCGTCTGATCAATTCATGCT-TC-AACCGAC 89
|| .||.||..|.||||||.|...|||.|...|.||||| || |||| |
BL03764___ykf 46 AG-TCCGGAAGCGCCGCGCACAATTGACCGGATGATGCTGTCAAACC--C 92
BSNT_02189___ 90 TGTA-ATGATCAGAGACTGGCTGGAGCGCA-TGACGTATGATGAAAGGCT 137
|||| ||| |.|||..||||||.|| ||.| ||.|.||.||.||..|.||
BL03764___ykf 93 TGTACATG-TGAGAAGCTGGCTTGA-CGAATTGTCCTACGAGGAGCGCCT 140
BSNT_02189___ 138 TGGATTATGTACAGACAA----TGTAATCCAAACTCAGGTTCTCTTTGGC 183
||...||||||| |.||| || |.|||||.||.||.||.||.|||
BL03764___ykf 141 TGAGCTATGTAC-GGCAAACCTTG---TTCAAACGCAAGTGCTTTTCGGC 186
BSNT_02189___ 184 GAAAAGGT---ACTTGTGA--CAGCGGAACAGGAGGAATGGG-TTTCTGT 227
|||.|.|| ||||.|.| .||||| ||| ||.|||| .||| ||
BL03764___ykf 187 GAAGATGTCCAACTTATAAAGGAGCGG----GGA-GACTGGGCGTTC-GT 230
BSNT_02189___ 228 GATCGTGCCTAGCCAGCCATCCCGAAAGGATCCGCGCGGATACCCGGGCT 277
.|||.|.||..|.|||||.||...|||.||....|||||.||||||||||
BL03764___ykf 231 CATCATTCCGGGACAGCCGTCTGCAAAAGACAAACGCGGCTACCCGGGCT 280
BSNT_02189___ 278 GGATGAAAAAGAACCAGCTGG--CAAAATCTATGCCCATC-CATTC---- 320
||||...||||.||...|||| .|||| |.||||..| .|.||
BL03764___ykf 281 GGATTCCAAAGGACTGCCTGGTCGAAAA---AAGCCCGGCGAAGTCTGAG 327
BSNT_02189___ 321 ACAACACGATGTGATGATCAGCAAACCTGCTGCCTTTTTGTACAAAAGCA 370
|||| .||..||.|| ||| .|||||..|.||.||.||.|| ..
BL03764___ykf 328 ACAA-GCGCCGTTAT--TCA-AAAACCGACGGCTTTCTTATA------TG 367
BSNT_02189___ 371 ATG--AAGAAAAGGA----GATCGAATTGAGCTTTTTGAC--AGTTCTCC 412
||| |||||||.|| .||.||..||||||||.|.|| || ||.|
BL03764___ykf 368 ATGACAAGAAAACGAAAGTTATTGAGCTGAGCTTTCTCACCAAG--CTGC 415
BSNT_02189___ 413 CCCTCATTGCAGAAGAAAACGGATATTTTAAGGTTTCGACTGTTTT--GG 460
||.|| ||| |.||..||...||.|||.||| ||
BL03764___ykf 416 CCGTC-TTG----------------TCTTCCGGCGGCGTCTGGTTTGAGG 448
BSNT_02189___ 461 GAGATA----GGTTTG-----------TGAAGCAAAG-TGATGCAGTGCC 494
..|||| |.||.| |||| .|||| .|||||.|
BL03764___ykf 449 TCGATACACCGCTTGGCCGCAAATGGCTGAA-AAAAGAAGATGCGG---- 493
BSNT_02189___ 495 TGTCAGCAAACA-----GAAAGGGACTGCTGAAGACATCATTCAAACGGG 539
.||...||||| .|||||.|..|..||.||.|||.|||||||.||
BL03764___ykf 494 -ATCTCGAAACACCTGTAAAAGGCAGCGGAGACGATATCGTTCAAACCGG 542
BSNT_02189___ 540 ---AGCTTTTTTTCTCGGA--CTTCCCTACCTATGGGGAGGGATCAGCGG 584
.||.||||| || ||.|||||.||.|||||||||||.|||||
BL03764___ykf 543 TCAGGCGTTTTT-----GAACCTGCCCTATCTTTGGGGAGGGATGAGCGG 587
BSNT_02189___ 585 GTTTGGGTTTGATTGCTCCGGTTTTATGTACAGTATATTTAAGGCGAATG 634
||||||.|..||.|||||.||.|||.|.|.||.|||..|.||||||||.|
BL03764___ykf 588 GTTTGGCTACGACTGCTCAGGATTTGTCTTCAATATGCTGAAGGCGAACG 637
BSNT_02189___ 635 GATACAGCATC----CCCCGTGATGCGGGAGATCAGGC-TAAGGCGGGGA 679
| |.|| || ||.||.|||||.||.||.||||| .|||||||..|
BL03764___ykf 638 G---CCGC-TCCGCGCCGCGCGATGCCGGCGACCAGGCGAAAGGCGGAAA 683
BSNT_02189___ 680 AG-GGTGT----------CCCGCTTGATGATATGAAAGC-CGGTGATCTG 717
|| |||.| |||| |||| .||.|||.|.
BL03764___ykf 684 AGAGGTATCCTTCAGCAGCCCG-------------AAGCGGGGCGATTTA 720
BSNT_02189___ 718 CTGTTTTTTGCTTATGAGGAAGGAAAAGGAGCGATTCATCACGTCGGTCT 767
||||||||.||.|||||.|||||.|.||||..|.||||.|||||||
BL03764___ykf 721 CTGTTTTTCGCATATGAAGAAGGCAGAGGACGGGTTCACCACGTCG---- 766
BSNT_02189___ 768 GTATGTA-GGCGG---CGGGAAAATGCTGCATTCTCCAAAGACAGGAAAA 813
|.||.|| .|||| |||..|.|||||.||.||||||||.||.||.|||
BL03764___ykf 767 GCATTTACTGCGGAAACGGAGAGATGCTTCACTCTCCAAAAACGGGCAAA 816
BSNT_02189___ 814 TCAATTGAAATCCTTACATTAAAAGACATAATCTATGAAAAAGAACTTTG 863
||.||.||..||.|..|..|.||||..|.|||.|||||||||||.||.||
BL03764___ykf 817 TCGATCGAGGTCATATCTCTTAAAGGTACAATTTATGAAAAAGAGCTGTG 866
BSNT_02189___ 864 TGCGGTGCGCCGCTGTTTTTCAGAATAA 891
|||..|..|.||||.|||||.|
BL03764___ykf 867 TGCCATCAGGCGCTATTTTTAA------ 888
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