Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02189 and BL03764

See Amino acid alignment / Visit BSNT_02189 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_02189___ykfC.1.5803.seq
#    -bsequence dna-align/BL03764___ykfC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02189___ykfC-BL03764___ykfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02189___ykfC-BL03764___ykfC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02189___ykfC
# 2: BL03764___ykfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 978
# Identity:     596/978 (60.9%)
# Similarity:   596/978 (60.9%)
# Gaps:         177/978 (18.1%)
# Score: 1523.5
# 
#
#=======================================

BSNT_02189___      1 ATGATGCACACTGTCATA--TCAG------CAGTGGCCAACATCTGGA-C     41
                     |||| ||   || |.|||  .|||      ||||.|||||..|||||| |
BL03764___ykf      1 ATGA-GC---CT-TTATACGACAGCCGTCTCAGTCGCCAATGTCTGGACC     45

BSNT_02189___     42 AGCGCCTGATTCACCGCGCCCGTCTGATCAATTCATGCT-TC-AACCGAC     89
                     || .||.||..|.||||||.|...|||.|...|.||||| || ||||  |
BL03764___ykf     46 AG-TCCGGAAGCGCCGCGCACAATTGACCGGATGATGCTGTCAAACC--C     92

BSNT_02189___     90 TGTA-ATGATCAGAGACTGGCTGGAGCGCA-TGACGTATGATGAAAGGCT    137
                     |||| ||| |.|||..||||||.|| ||.| ||.|.||.||.||..|.||
BL03764___ykf     93 TGTACATG-TGAGAAGCTGGCTTGA-CGAATTGTCCTACGAGGAGCGCCT    140

BSNT_02189___    138 TGGATTATGTACAGACAA----TGTAATCCAAACTCAGGTTCTCTTTGGC    183
                     ||...||||||| |.|||    ||   |.|||||.||.||.||.||.|||
BL03764___ykf    141 TGAGCTATGTAC-GGCAAACCTTG---TTCAAACGCAAGTGCTTTTCGGC    186

BSNT_02189___    184 GAAAAGGT---ACTTGTGA--CAGCGGAACAGGAGGAATGGG-TTTCTGT    227
                     |||.|.||   ||||.|.|  .|||||    ||| ||.|||| .||| ||
BL03764___ykf    187 GAAGATGTCCAACTTATAAAGGAGCGG----GGA-GACTGGGCGTTC-GT    230

BSNT_02189___    228 GATCGTGCCTAGCCAGCCATCCCGAAAGGATCCGCGCGGATACCCGGGCT    277
                     .|||.|.||..|.|||||.||...|||.||....|||||.||||||||||
BL03764___ykf    231 CATCATTCCGGGACAGCCGTCTGCAAAAGACAAACGCGGCTACCCGGGCT    280

BSNT_02189___    278 GGATGAAAAAGAACCAGCTGG--CAAAATCTATGCCCATC-CATTC----    320
                     ||||...||||.||...||||  .||||   |.||||..| .|.||    
BL03764___ykf    281 GGATTCCAAAGGACTGCCTGGTCGAAAA---AAGCCCGGCGAAGTCTGAG    327

BSNT_02189___    321 ACAACACGATGTGATGATCAGCAAACCTGCTGCCTTTTTGTACAAAAGCA    370
                     |||| .||..||.||  ||| .|||||..|.||.||.||.||      ..
BL03764___ykf    328 ACAA-GCGCCGTTAT--TCA-AAAACCGACGGCTTTCTTATA------TG    367

BSNT_02189___    371 ATG--AAGAAAAGGA----GATCGAATTGAGCTTTTTGAC--AGTTCTCC    412
                     |||  |||||||.||    .||.||..||||||||.|.||  ||  ||.|
BL03764___ykf    368 ATGACAAGAAAACGAAAGTTATTGAGCTGAGCTTTCTCACCAAG--CTGC    415

BSNT_02189___    413 CCCTCATTGCAGAAGAAAACGGATATTTTAAGGTTTCGACTGTTTT--GG    460
                     ||.|| |||                |.||..||...||.|||.|||  ||
BL03764___ykf    416 CCGTC-TTG----------------TCTTCCGGCGGCGTCTGGTTTGAGG    448

BSNT_02189___    461 GAGATA----GGTTTG-----------TGAAGCAAAG-TGATGCAGTGCC    494
                     ..||||    |.||.|           |||| .|||| .|||||.|    
BL03764___ykf    449 TCGATACACCGCTTGGCCGCAAATGGCTGAA-AAAAGAAGATGCGG----    493

BSNT_02189___    495 TGTCAGCAAACA-----GAAAGGGACTGCTGAAGACATCATTCAAACGGG    539
                      .||...|||||     .|||||.|..|..||.||.|||.|||||||.||
BL03764___ykf    494 -ATCTCGAAACACCTGTAAAAGGCAGCGGAGACGATATCGTTCAAACCGG    542

BSNT_02189___    540 ---AGCTTTTTTTCTCGGA--CTTCCCTACCTATGGGGAGGGATCAGCGG    584
                        .||.|||||     ||  ||.|||||.||.|||||||||||.|||||
BL03764___ykf    543 TCAGGCGTTTTT-----GAACCTGCCCTATCTTTGGGGAGGGATGAGCGG    587

BSNT_02189___    585 GTTTGGGTTTGATTGCTCCGGTTTTATGTACAGTATATTTAAGGCGAATG    634
                     ||||||.|..||.|||||.||.|||.|.|.||.|||..|.||||||||.|
BL03764___ykf    588 GTTTGGCTACGACTGCTCAGGATTTGTCTTCAATATGCTGAAGGCGAACG    637

BSNT_02189___    635 GATACAGCATC----CCCCGTGATGCGGGAGATCAGGC-TAAGGCGGGGA    679
                     |   |.|| ||    ||.||.|||||.||.||.||||| .|||||||..|
BL03764___ykf    638 G---CCGC-TCCGCGCCGCGCGATGCCGGCGACCAGGCGAAAGGCGGAAA    683

BSNT_02189___    680 AG-GGTGT----------CCCGCTTGATGATATGAAAGC-CGGTGATCTG    717
                     || |||.|          ||||             |||| .||.|||.|.
BL03764___ykf    684 AGAGGTATCCTTCAGCAGCCCG-------------AAGCGGGGCGATTTA    720

BSNT_02189___    718 CTGTTTTTTGCTTATGAGGAAGGAAAAGGAGCGATTCATCACGTCGGTCT    767
                     ||||||||.||.|||||.|||||.|.||||..|.||||.|||||||    
BL03764___ykf    721 CTGTTTTTCGCATATGAAGAAGGCAGAGGACGGGTTCACCACGTCG----    766

BSNT_02189___    768 GTATGTA-GGCGG---CGGGAAAATGCTGCATTCTCCAAAGACAGGAAAA    813
                     |.||.|| .||||   |||..|.|||||.||.||||||||.||.||.|||
BL03764___ykf    767 GCATTTACTGCGGAAACGGAGAGATGCTTCACTCTCCAAAAACGGGCAAA    816

BSNT_02189___    814 TCAATTGAAATCCTTACATTAAAAGACATAATCTATGAAAAAGAACTTTG    863
                     ||.||.||..||.|..|..|.||||..|.|||.|||||||||||.||.||
BL03764___ykf    817 TCGATCGAGGTCATATCTCTTAAAGGTACAATTTATGAAAAAGAGCTGTG    866

BSNT_02189___    864 TGCGGTGCGCCGCTGTTTTTCAGAATAA    891
                     |||..|..|.||||.|||||.|      
BL03764___ykf    867 TGCCATCAGGCGCTATTTTTAA------    888


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