Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02198 and BL03761

See Amino acid alignment / Visit BSNT_02198 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_02198___ykjA.1.5803.seq
#    -bsequence dna-align/BL03761___ykjA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02198___ykjA-BL03761___ykjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02198___ykjA-BL03761___ykjA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02198___ykjA
# 2: BL03761___ykjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     517/776 (66.6%)
# Similarity:   517/776 (66.6%)
# Gaps:          76/776 ( 9.8%)
# Score: 1560.5
# 
#
#=======================================

BSNT_02198___      1 ----GTGTTATGGATGA-----TATGGGTATTTTTACTGAAGCCAGTTAT     41
                         |||..|||..|||     |||||...||||||...|||||.|.|.|
BL03761___ykj      1 TTGGGTGAAATGCTTGAATTTGTATGGACTTTTTTAGCCAAGCCTGCTTT     50

BSNT_02198___     42 CGTATTTTCGATTGCGTATATTTTATTTCGGCTTGCCGGTAAAAAAGCTG     91
                     .||.||.||.||.||.||||||.|.||.||..|.||.||.||.|||||.|
BL03761___ykj     51 AGTGTTCTCTATAGCTTATATTCTTTTCCGAATCGCAGGGAAGAAAGCCG    100

BSNT_02198___     92 TGTCACAAATGAACAATTTTGATCTGCTTT--TGACCTTCGCAATCGGAA    139
                     |.||.|||||||..||.||.||.||  |||  ||||.||.||.||.||||
BL03761___ykj    101 TTTCGCAAATGACGAACTTCGACCT--TTTGCTGACATTTGCGATTGGAA    148

BSNT_02198___    140 CCATTATCAGTGAGCCGATCCTTACATCCAAGCTGCCGATGTCAATTTAT    189
                     |.||.|||||.||.|||||.|||||.||.||..|..|.|||||.||||||
BL03761___ykj    149 CGATCATCAGCGAACCGATTCTTACTTCTAAAATTTCAATGTCCATTTAT    198

BSNT_02198___    190 TATGCGGGTGCTTTTTTGGTGCTT-TATCTTATCA-TGAGCAAGCTCTCT    237
                     ||.|||..|.|.|||.||.| ||| |||.|..|.| ||| .|||||.||.
BL03761___ykj    199 TACGCGCTTACCTTTCTGAT-CTTCTATTTGTTGATTGA-AAAGCTGTCA    246

BSNT_02198___    238 TTATCTAATAAATGGCGATGGCTCCTAGTCGTGAGCCCGACTGTCCTAAT    287
                     |||...|||||||||||||||.|.||.|||||.||.|||||.||.||.||
BL03761___ykj    247 TTACACAATAAATGGCGATGGTTTCTTGTCGTCAGTCCGACCGTGCTGAT    296

BSNT_02198___    288 CCGAAACGGGGATATTGATGAACGCGGCCTTCGTAAAGAAA--GGCTGAC    335
                     |||||||||..||||||||.||.|.||  .|...|||||.|  |||||||
BL03761___ykj    297 CCGAAACGGCAATATTGATAAAGGAGG--ATTAAAAAGAGAGCGGCTGAC    344

BSNT_02198___    336 TGTTAATGAGCTGCTTGGAAAGCTGAGGGAAAAGGGCTATGCCGACCCGG    385
                     |||.|||||.|||||.||.||..||.|.|||||.||||||||||||||..
BL03761___ykj    345 TGTCAATGAACTGCTCGGCAAATTGCGCGAAAAAGGCTATGCCGACCCAA    394

BSNT_02198___    386 CTGACATTGATCTTGCTATCATTGAAGAAACGGG--AGAAGTAAGCGTCA    433
                     ..||.||.||.||.||..|.|||||||||.||||  |||  |.|||||.|
BL03761___ykj    395 AAGATATCGACCTCGCCCTGATTGAAGAATCGGGCCAGA--TCAGCGTGA    442

BSNT_02198___    434 TCCCGAGAGAGGAAGCGAGAGCGGTGCAGGTGCGGGATTTGAATATGGAA    483
                     |.||.|.|..||||||.||..|.||.|||..||||||..|.||..||| |
BL03761___ykj    443 TTCCCAAATCGGAAGCAAGGCCTGTACAGCCGCGGGACCTCAACTTGG-A    491

BSNT_02198___    484 GCTGAA-CGGAATTTTATCCCGATTCCGCTCATACTGGATGGCGAAATCC    532
                     |..||| ||||||||..|.||||||||||||||..|.||.||||||||..
BL03761___ykj    492 GACGAAGCGGAATTTCGTGCCGATTCCGCTCATTTTAGACGGCGAAATTA    541

BSNT_02198___    533 TTGATCATAATTTGAAATATCTCCAAAAAAAC---CGATCCTGGCTGTTT    579
                     |.||.||.|||||.||||| ||..||||||||   .||  .|||||||||
BL03761___ykj    542 TCGAACACAATTTAAAATA-CTTGAAAAAAACGAAAGA--ATGGCTGTTT    588

BSNT_02198___    580 GAGAAGCTTGAGGAAAAAGGG-TACAGCCCCAAAC--TGCTGTCTTCGAT    626
                     .|.||..|.|||||.|||||| |..||   |||.|  |||||.|..|.||
BL03761___ykj    589 CAAAAATTAGAGGATAAAGGGATTGAG---CAAGCGATGCTGCCAACCAT    635

BSNT_02198___    627 CACCTTAGGCACGATGAATGCGCG----AGGTGA---TATATCCCTTGAT    669
                     .||..|.|||||..||||    ||    |..|||   ||||   .|||| 
BL03761___ykj    636 TACGCTCGGCACCTTGAA----CGAAAAAAATGAAATTATA---ATTGA-    677

BSNT_02198___    670 TTA---AATACCTCTAATGACCCGCAG----------CATGATCCTTACT    706
                      ||   ||.|.|        ||.||||          |||||.||.||..
BL03761___ykj    678 -TACGGAAGATC--------CCGGCAGCCCGTTAACCCATGACCCGTATC    718

BSNT_02198___    707 TATATAAACCGGGAAATAACAACTAA    732
                     |.|||||||||||..|..||.|.|||
BL03761___ykj    719 TCTATAAACCGGGGCAAGACCATTAA    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02198 and BL03761

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
