Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01271 and BL03760

See Amino acid alignment / Visit BSNT_01271 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:46
# Commandline: needle
#    -asequence dna-align/BSNT_01271___pel.1.5803.seq
#    -bsequence dna-align/BL03760___pel.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01271___pel-BL03760___pel.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01271___pel-BL03760___pel.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01271___pel
# 2: BL03760___pel
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1415
# Identity:     849/1415 (60.0%)
# Similarity:   849/1415 (60.0%)
# Gaps:         259/1415 (18.3%)
# Score: 2203.5
# 
#
#=======================================

BSNT_01271___      1 ATGAAAA-------AAGTG-----ATGTTAG-----CTGCGGCT--TTGT     31
                     |||||||       .||||     ||.||||     ||||.|||  |.| 
BL03760___pel      1 ATGAAAAGGTTTTTTAGTGTAATAATTTTAGGCGCCCTGCTGCTGCTCG-     49

BSNT_01271___     32 TTTTAGGATTGACTCCAGCTGGCG-----CGAACGCAGCTGATTTAGGCC     76
                          |||       ||.|| |||     |||| ||.||.||.|..||  
BL03760___pel     50 -----GGA-------CATCT-GCGCCAATCGAA-GCGGCAGACTACGG--     83

BSNT_01271___     77 ACCAGACGT--TGGGATCCAATGATGGCTGGGGCGCGTACTCG-ACCGGC    123
                     ||..|||||  |.||.||.||.||.|||||||||||.|| |.| |..||.
BL03760___pel     84 ACGCGACGTCCTCGGCTCAAAAGACGGCTGGGGCGCTTA-TGGAAAAGGA    132

BSNT_01271___    124 ACGACAGGCGGATCAAAAGCATC--CTCCTCAAATGTGTATACCGTCAGC    171
                     |||||.||.||..|..|.||.||  ||..||  |.||.|||||.||||..
BL03760___pel    133 ACGACCGGAGGCGCTGACGCTTCTTCTGATC--AGGTATATACGGTCAAA    180

BSNT_01271___    172 AACAGAAACCAGCTTGTCTCGGCATTAGGG------AAGGAAACGAACA-    214
                     |||.|.||.||||||||...||||||||||      ||..|||.||||| 
BL03760___pel    181 AACCGCAAGCAGCTTGTTGAGGCATTAGGGGGAGACAATAAAAAGAACAG    230

BSNT_01271___    215 --------CAACGCCAAAAATCATTTATATCAAGGGAACGATTGACATGA    256
                             ..|||||.||.|||||.|||.|.||||||||.||..|..|.|
BL03760___pel    231 CGAAAATGATACGCCGAAGATCATCTATGTGAAGGGAACAATCAATCTTA    280

BSNT_01271___    257 ACGTG-----GATGACAATCTGAAGCCGCTTGGCCTA--AATGATTATAA    299
                       |||     ||||||||   .||.|| .||.|.|||  || ||||||||
BL03760___pel    281 --GTGTTGATGATGACAA---CAATCC-TTTAGGCTATGAA-GATTATAA    323

BSNT_01271___    300 AGATCCGGAGTAT--GATTTGGACAAA---TATTTGAAAGCCTATGATCC    344
                     |||.||.||.|||  |||     |.||   |||.|.|||||.||||||||
BL03760___pel    324 AGACCCCGAATATTCGAT-----CGAAGCGTATCTCAAAGCTTATGATCC    368

BSNT_01271___    345 TAGCACATGGGGCAAAAAAGAGCCGTCGGGAACACAAGAAGAAGCGAGAG    394
                     .|..|.||||||.|||||.||||||.|.||||..|..|||||.||.|| |
BL03760___pel    369 GAAGAAATGGGGGAAAAAGGAGCCGACAGGAAAGCTTGAAGAGGCAAG-G    417

BSNT_01271___    395 C-ACGCTCTCAGAAA---AACCAAAAAGCACGGGTCATGGTGGAT----A    436
                     | .|||||   ||||   ||.|||||.|.|||||||    |.|||    .
BL03760___pel    418 CTCCGCTC---GAAAGATAATCAAAAGGAACGGGTC----TTGATCAGAG    460

BSNT_01271___    437 TCCCTGCAAACACGACGATCGTC-GGTTCAGGGACTAACGCTAAAGTCGT    485
                     ||..|.|.|||||.|||||..|| ||.||.|.|| |.|.||.|||.||||
BL03760___pel    461 TCGGTTCGAACACAACGATTATCGGGCTCGGAGA-TGATGCGAAAATCGT    509

BSNT_01271___    486 GGGAGGAAACTTCCAAATCAA----GAGTGATAACGTCATTATTCGCAAC    531
                     .||.|||..|.|..|..||||    |.| ||.|||||||||||.|||||.
BL03760___pel    510 CGGCGGAGGCCTTTATGTCAAAAACGCG-GAAAACGTCATTATCCGCAAT    558

BSNT_01271___    532 ATTGAATTCCAGGATGCCTATGACTATTTTCC---GCAATGGGATCCGAC    578
                     ||.||||||.|..|.||.||.|| |.|.||||   ||  |||||||||||
BL03760___pel    559 ATCGAATTCGAAAACGCGTACGA-TTTCTTCCCTGGC--TGGGATCCGAC    605

BSNT_01271___    579 TGACGGAAGCTCAGGGAACTGGAACTCACAATACGACAACATCACGAT--    626
                     .||.||.|||...||.||||||||.|||.||||.||||||.|...|||  
BL03760___pel    606 GGATGGGAGCAGCGGTAACTGGAATTCAGAATATGACAACCTGCTGATCG    655

BSNT_01271___    627 AAACGGCGGCACACACATCTGGATTGATCACTGTACATTTAATGACGGTT    676
                     |||.|.|  ||.|.|.||.|||||.||.|||||..||||.||||||||..
BL03760___pel    656 AAATGTC--CAAAAATATTTGGATCGACCACTGCTCATTCAATGACGGAG    703

BSNT_01271___    677 CGCGTCCGGA-CAGCACATCACCGAAA--TATTATGGAAGAAAATATCAG    723
                     ..|..||.|| .|||   |.||.||||  .|||..||..|..|||..|||
BL03760___pel    704 ATCAGCCTGATGAGC---TGACTGAAACGCATTTCGGGCGCGAATTCCAG    750

BSNT_01271___    724 CACCATGACGGCCAAACGGATGCT-----TCCAA-------CGGTGCTAA    761
                     ||.||.|||||.|       ||||     ||.||       |||     |
BL03760___pel    751 CATCACGACGGAC-------TGCTTGATATCAAAAAGCAGTCGG-----A    788

BSNT_01271___    762 CTATATCACGATGTCCTACAAC-TATTATCACGATCATGATAAAAGCTCC    810
                     .|..||.|||.||||.||||.| ||||.|||.|| |||..|||||.|.|.
BL03760___pel    789 TTTCATTACGGTGTCATACAGCATATTTTCAGGA-CATTCTAAAAACACG    837

BSNT_01271___    811 ATTTTCGGATCAAGTGACAGCAAAACCTCCGATGACGGCAAATTAAAAAT    860
                     |||.||||||||||.||||||.|.|...|.||..||||..|.||||...|
BL03760___pel    838 ATTATCGGATCAAGCGACAGCTACAAAGCAGACAACGGGCATTTAAGGGT    887

BSNT_01271___    861 TACGCTGCATCATAACCGCTATAAAAATATTGTCCAGCGCGCGCCGAGAG    910
                     .||..|.||.||.||.|.|||..|||||||.....||||.||.|||.|.|
BL03760___pel    888 GACATTCCACCACAATCTCTACGAAAATATAAAAGAGCGGGCACCGCGCG    937

BSNT_01271___    911 TCCGCTTCGGGCAAGTGCACGTATACAACAACTATTATGAAGGAAGCACA    960
                     ||||||.|||..||||||||.|.|||||||||||||.|.|   ||||||.
BL03760___pel    938 TCCGCTACGGAAAAGTGCACATTTACAACAACTATTTTAA---AAGCACG    984

BSNT_01271___    961 AGCTCTTCAAGTTATCCTTTCAGCTATGCATGGGGAATCGGAAAGTCATC   1010
                     |       |||..|.|  |.||..|||.|||||||..|.||..|.||.||
BL03760___pel    985 A-------AAGACAGC--TACAATTATTCATGGGGCGTAGGCTATTCTTC   1025

BSNT_01271___   1011 TAAAATCTATGCCCAAAACAATGTCATTGACGTACCGG-------GACTG   1053
                     .|||||.|||||..|..||||...|.|||||.|.||||       ||   
BL03760___pel   1026 AAAAATTTATGCTGAGGACAACTACTTTGACCTGCCGGAAGGAACGA---   1072

BSNT_01271___   1054 TCAGCTGCTAAAAC-GATCAGCGTATTCAGCGGGGGAACGGCTTTATATG   1102
                       |||..|.||||| |||.|..||.||.|..||.|  || ||||||||||
BL03760___pel   1073 --AGCCTCAAAAACTGATGAAGGTCTTTAAAGGTG--AC-GCTTTATATG   1117

BSNT_01271___   1103 A-----CTCCG-----------GCA------CGTTGCTGAA---------   1121
                     |     .|.||           .||      |||.||..||         
BL03760___pel   1118 AAAAAGATACGATCGTAAACAACCAAAAAAGCGTCGCAAAAATTGATGTT   1167

BSNT_01271___   1122 --CGGCACACAGATCAACGCATCGGCTGCAAACGGGCTGAGCTCT-----   1164
                       |.|||||.|.|.|||         .||||||  ..||.| |||     
BL03760___pel   1168 GTCAGCACATACAACAA---------AGCAAAC--AATGCG-TCTATTAA   1205

BSNT_01271___   1165 ----TCTGTCGGCTGGACGCCGTCTCTGCATG----GATCGATTGATGCT   1206
                         ||.|.||||||||.||||.|.|||..||    .||||| .||.|| 
BL03760___pel   1206 AAAATCGGCCGGCTGGAAGCCGACGCTGTTTGAAAAAATCGA-CGACGC-   1253

BSNT_01271___   1207 TCTGCTA----ATGT----GAAATCAAATGTTATAAATCAAGCGGGTGCG   1248
                           |    ||||    |.||||    |||..|...||.||.||.||.
BL03760___pel   1254 ------AGAAGATGTGCCGGCAATC----GTTGAAGCGCACGCAGGCGCA   1293

BSNT_01271___   1249 GGTAAATTAAAATAA   1263
                     ||.|||.|.||.|||
BL03760___pel   1294 GGAAAACTGAAGTAA   1308


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.