Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01271 and BL03760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_01271___pel.1.5803.seq
# -bsequence dna-align/BL03760___pel.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01271___pel-BL03760___pel.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01271___pel-BL03760___pel.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01271___pel
# 2: BL03760___pel
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1415
# Identity: 849/1415 (60.0%)
# Similarity: 849/1415 (60.0%)
# Gaps: 259/1415 (18.3%)
# Score: 2203.5
#
#
#=======================================
BSNT_01271___ 1 ATGAAAA-------AAGTG-----ATGTTAG-----CTGCGGCT--TTGT 31
||||||| .|||| ||.|||| ||||.||| |.|
BL03760___pel 1 ATGAAAAGGTTTTTTAGTGTAATAATTTTAGGCGCCCTGCTGCTGCTCG- 49
BSNT_01271___ 32 TTTTAGGATTGACTCCAGCTGGCG-----CGAACGCAGCTGATTTAGGCC 76
||| ||.|| ||| |||| ||.||.||.|..||
BL03760___pel 50 -----GGA-------CATCT-GCGCCAATCGAA-GCGGCAGACTACGG-- 83
BSNT_01271___ 77 ACCAGACGT--TGGGATCCAATGATGGCTGGGGCGCGTACTCG-ACCGGC 123
||..||||| |.||.||.||.||.|||||||||||.|| |.| |..||.
BL03760___pel 84 ACGCGACGTCCTCGGCTCAAAAGACGGCTGGGGCGCTTA-TGGAAAAGGA 132
BSNT_01271___ 124 ACGACAGGCGGATCAAAAGCATC--CTCCTCAAATGTGTATACCGTCAGC 171
|||||.||.||..|..|.||.|| ||..|| |.||.|||||.||||..
BL03760___pel 133 ACGACCGGAGGCGCTGACGCTTCTTCTGATC--AGGTATATACGGTCAAA 180
BSNT_01271___ 172 AACAGAAACCAGCTTGTCTCGGCATTAGGG------AAGGAAACGAACA- 214
|||.|.||.||||||||...|||||||||| ||..|||.|||||
BL03760___pel 181 AACCGCAAGCAGCTTGTTGAGGCATTAGGGGGAGACAATAAAAAGAACAG 230
BSNT_01271___ 215 --------CAACGCCAAAAATCATTTATATCAAGGGAACGATTGACATGA 256
..|||||.||.|||||.|||.|.||||||||.||..|..|.|
BL03760___pel 231 CGAAAATGATACGCCGAAGATCATCTATGTGAAGGGAACAATCAATCTTA 280
BSNT_01271___ 257 ACGTG-----GATGACAATCTGAAGCCGCTTGGCCTA--AATGATTATAA 299
||| |||||||| .||.|| .||.|.||| || ||||||||
BL03760___pel 281 --GTGTTGATGATGACAA---CAATCC-TTTAGGCTATGAA-GATTATAA 323
BSNT_01271___ 300 AGATCCGGAGTAT--GATTTGGACAAA---TATTTGAAAGCCTATGATCC 344
|||.||.||.||| ||| |.|| |||.|.|||||.||||||||
BL03760___pel 324 AGACCCCGAATATTCGAT-----CGAAGCGTATCTCAAAGCTTATGATCC 368
BSNT_01271___ 345 TAGCACATGGGGCAAAAAAGAGCCGTCGGGAACACAAGAAGAAGCGAGAG 394
.|..|.||||||.|||||.||||||.|.||||..|..|||||.||.|| |
BL03760___pel 369 GAAGAAATGGGGGAAAAAGGAGCCGACAGGAAAGCTTGAAGAGGCAAG-G 417
BSNT_01271___ 395 C-ACGCTCTCAGAAA---AACCAAAAAGCACGGGTCATGGTGGAT----A 436
| .||||| |||| ||.|||||.|.||||||| |.||| .
BL03760___pel 418 CTCCGCTC---GAAAGATAATCAAAAGGAACGGGTC----TTGATCAGAG 460
BSNT_01271___ 437 TCCCTGCAAACACGACGATCGTC-GGTTCAGGGACTAACGCTAAAGTCGT 485
||..|.|.|||||.|||||..|| ||.||.|.|| |.|.||.|||.||||
BL03760___pel 461 TCGGTTCGAACACAACGATTATCGGGCTCGGAGA-TGATGCGAAAATCGT 509
BSNT_01271___ 486 GGGAGGAAACTTCCAAATCAA----GAGTGATAACGTCATTATTCGCAAC 531
.||.|||..|.|..|..|||| |.| ||.|||||||||||.|||||.
BL03760___pel 510 CGGCGGAGGCCTTTATGTCAAAAACGCG-GAAAACGTCATTATCCGCAAT 558
BSNT_01271___ 532 ATTGAATTCCAGGATGCCTATGACTATTTTCC---GCAATGGGATCCGAC 578
||.||||||.|..|.||.||.|| |.|.|||| || |||||||||||
BL03760___pel 559 ATCGAATTCGAAAACGCGTACGA-TTTCTTCCCTGGC--TGGGATCCGAC 605
BSNT_01271___ 579 TGACGGAAGCTCAGGGAACTGGAACTCACAATACGACAACATCACGAT-- 626
.||.||.|||...||.||||||||.|||.||||.||||||.|...|||
BL03760___pel 606 GGATGGGAGCAGCGGTAACTGGAATTCAGAATATGACAACCTGCTGATCG 655
BSNT_01271___ 627 AAACGGCGGCACACACATCTGGATTGATCACTGTACATTTAATGACGGTT 676
|||.|.| ||.|.|.||.|||||.||.|||||..||||.||||||||..
BL03760___pel 656 AAATGTC--CAAAAATATTTGGATCGACCACTGCTCATTCAATGACGGAG 703
BSNT_01271___ 677 CGCGTCCGGA-CAGCACATCACCGAAA--TATTATGGAAGAAAATATCAG 723
..|..||.|| .||| |.||.|||| .|||..||..|..|||..|||
BL03760___pel 704 ATCAGCCTGATGAGC---TGACTGAAACGCATTTCGGGCGCGAATTCCAG 750
BSNT_01271___ 724 CACCATGACGGCCAAACGGATGCT-----TCCAA-------CGGTGCTAA 761
||.||.|||||.| |||| ||.|| ||| |
BL03760___pel 751 CATCACGACGGAC-------TGCTTGATATCAAAAAGCAGTCGG-----A 788
BSNT_01271___ 762 CTATATCACGATGTCCTACAAC-TATTATCACGATCATGATAAAAGCTCC 810
.|..||.|||.||||.||||.| ||||.|||.|| |||..|||||.|.|.
BL03760___pel 789 TTTCATTACGGTGTCATACAGCATATTTTCAGGA-CATTCTAAAAACACG 837
BSNT_01271___ 811 ATTTTCGGATCAAGTGACAGCAAAACCTCCGATGACGGCAAATTAAAAAT 860
|||.||||||||||.||||||.|.|...|.||..||||..|.||||...|
BL03760___pel 838 ATTATCGGATCAAGCGACAGCTACAAAGCAGACAACGGGCATTTAAGGGT 887
BSNT_01271___ 861 TACGCTGCATCATAACCGCTATAAAAATATTGTCCAGCGCGCGCCGAGAG 910
.||..|.||.||.||.|.|||..|||||||.....||||.||.|||.|.|
BL03760___pel 888 GACATTCCACCACAATCTCTACGAAAATATAAAAGAGCGGGCACCGCGCG 937
BSNT_01271___ 911 TCCGCTTCGGGCAAGTGCACGTATACAACAACTATTATGAAGGAAGCACA 960
||||||.|||..||||||||.|.|||||||||||||.|.| ||||||.
BL03760___pel 938 TCCGCTACGGAAAAGTGCACATTTACAACAACTATTTTAA---AAGCACG 984
BSNT_01271___ 961 AGCTCTTCAAGTTATCCTTTCAGCTATGCATGGGGAATCGGAAAGTCATC 1010
| |||..|.| |.||..|||.|||||||..|.||..|.||.||
BL03760___pel 985 A-------AAGACAGC--TACAATTATTCATGGGGCGTAGGCTATTCTTC 1025
BSNT_01271___ 1011 TAAAATCTATGCCCAAAACAATGTCATTGACGTACCGG-------GACTG 1053
.|||||.|||||..|..||||...|.|||||.|.|||| ||
BL03760___pel 1026 AAAAATTTATGCTGAGGACAACTACTTTGACCTGCCGGAAGGAACGA--- 1072
BSNT_01271___ 1054 TCAGCTGCTAAAAC-GATCAGCGTATTCAGCGGGGGAACGGCTTTATATG 1102
|||..|.||||| |||.|..||.||.|..||.| || ||||||||||
BL03760___pel 1073 --AGCCTCAAAAACTGATGAAGGTCTTTAAAGGTG--AC-GCTTTATATG 1117
BSNT_01271___ 1103 A-----CTCCG-----------GCA------CGTTGCTGAA--------- 1121
| .|.|| .|| |||.||..||
BL03760___pel 1118 AAAAAGATACGATCGTAAACAACCAAAAAAGCGTCGCAAAAATTGATGTT 1167
BSNT_01271___ 1122 --CGGCACACAGATCAACGCATCGGCTGCAAACGGGCTGAGCTCT----- 1164
|.|||||.|.|.||| .|||||| ..||.| |||
BL03760___pel 1168 GTCAGCACATACAACAA---------AGCAAAC--AATGCG-TCTATTAA 1205
BSNT_01271___ 1165 ----TCTGTCGGCTGGACGCCGTCTCTGCATG----GATCGATTGATGCT 1206
||.|.||||||||.||||.|.|||..|| .||||| .||.||
BL03760___pel 1206 AAAATCGGCCGGCTGGAAGCCGACGCTGTTTGAAAAAATCGA-CGACGC- 1253
BSNT_01271___ 1207 TCTGCTA----ATGT----GAAATCAAATGTTATAAATCAAGCGGGTGCG 1248
| |||| |.|||| |||..|...||.||.||.||.
BL03760___pel 1254 ------AGAAGATGTGCCGGCAATC----GTTGAAGCGCACGCAGGCGCA 1293
BSNT_01271___ 1249 GGTAAATTAAAATAA 1263
||.|||.|.||.|||
BL03760___pel 1294 GGAAAACTGAAGTAA 1308
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