Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02116 and BL03748
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_02116___xre.1.5803.seq
# -bsequence dna-align/BL03748___xre.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02116___xre-BL03748___xre.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02116___xre-BL03748___xre.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02116___xre
# 2: BL03748___xre
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 360
# Identity: 277/360 (76.9%)
# Similarity: 277/360 (76.9%)
# Gaps: 24/360 ( 6.7%)
# Score: 1042.0
#
#
#=======================================
BSNT_02116___ 1 ATGATAGGCGGCAGATTGAAGAGTCTCAGAGGGAAAAGGACACAGGAAGA 50
|||.|||||||||||.|||||||.||.|||||.|||||||||||||||||
BL03748___xre 1 ATGTTAGGCGGCAGACTGAAGAGCCTGAGAGGAAAAAGGACACAGGAAGA 50
BSNT_02116___ 51 AATCGCATCACACATCGGTGTGTCACGGGCACGATATTCCCACTATGAAA 100
|.|.|||...||.||||||||.||.||||||||.||.|||||.|||||||
BL03748___xre 51 AGTGGCAAAGCAGATCGGTGTATCGCGGGCACGCTACTCCCATTATGAAA 100
BSNT_02116___ 101 ATGGGCGAAGCGAACCTGATTACGACACACTCCAAAAGCTGGCTGATTAC 150
|.||..|||||||.||.||.||.||.|||.|..||||.||.|||||||||
BL03748___xre 101 ACGGAAGAAGCGAGCCGGACTATGAAACATTAAAAAAACTCGCTGATTAC 150
BSNT_02116___ 151 TTTCAAGTAACGACTGATTA-CTTATTA-----ACGGGAAAAGACAAAAA 194
|.|.||||.||||..||.|| ||..|.| || |||||||| |||||
BL03748___xre 151 TATAAAGTGACGATAGACTATCTGCTGACAGGCAC-GGAAAAGA-AAAAA 198
BSNT_02116___ 195 ATC--CGATGACGATATGTTCTCAGATCCGGACCTGCAGCTTGCATACCG 242
|.| |||.|||||.| ||.||||||||||.|||||..||||.|||||
BL03748___xre 199 AACATCGAAGACGAAA---TCGCAGATCCGGATCTGCAAATTGCCTACCG 245
BSNT_02116___ 243 CGATATGCAGGATTTTTCCCCAGAAAGCAAACAGCAGGCCATCGAATTTA 292
|||.||||||||.||||||||.|||||||.|||||||||||||||.||.|
BL03748___xre 246 CGACATGCAGGAATTTTCCCCCGAAAGCAGACAGCAGGCCATCGAGTTCA 295
BSNT_02116___ 293 -TCAACTATTTAAAAGAAAAAGAGAAAAACCGCAAACC----GAAAAATA 337
|||| ||.|||||||||||||||||.||.||.||.|| ||.|||.|
BL03748___xre 296 TTCAA-TACTTAAAAGAAAAAGAGAAGAAACGAAAGCCCGGAGATAAACA 344
BSNT_02116___ 338 A-----ATAA 342
| ||||
BL03748___xre 345 AAACGGATAA 354
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