Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02210 and BL03734

See Amino acid alignment / Visit BSNT_02210 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_02210___ykmA.1.5803.seq
#    -bsequence dna-align/BL03734___ohrR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02210___ykmA-BL03734___ohrR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02210___ykmA-BL03734___ohrR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02210___ykmA
# 2: BL03734___ohrR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 481
# Identity:     308/481 (64.0%)
# Similarity:   308/481 (64.0%)
# Gaps:          65/481 (13.5%)
# Score: 890.5
# 
#
#=======================================

BSNT_02210___      1 ATGGAAAATAAATTTGATCATATGAAATTGGAGAATCAGCTTTGTTTTTT     50
                     ||||.|||..|||||||.|||||||...|.||.|..||||||||.|||.|
BL03734___ohr      1 ATGGCAAACGAATTTGAACATATGAGGCTTGACAGACAGCTTTGCTTTCT     50

BSNT_02210___     51 GCTATATGCGAGTTCGCGGGAAATGATAAAGCAATACAAGCCTCTGCTTG    100
                     .||.|||||.||.|||||.|||||||..||||..||||||||||||||||
BL03734___ohr     51 CCTTTATGCAAGCTCGCGTGAAATGACGAAGCTTTACAAGCCTCTGCTTG    100

BSNT_02210___    101 ATAAGCTGAATATAACATACCCCCAATATTTGGCTTTGCTTTTGTTATGG    150
                     ||.|.||.|||||.||.||.||.||.||..|.||..|.|||||.||||||
BL03734___ohr    101 ATGAACTCAATATTACGTATCCGCAGTACCTCGCGCTCCTTTTATTATGG    150

BSNT_02210___    151 GAACAC---GAA--ACGCTTACTGTCAAAAAAATGGGCGAACAGCTGTAT    195
                     ||||||   |||  |.||     |||||||.|||||||.|.|..||.|||
BL03734___ohr    151 GAACACGGGGAATTAAGC-----GTCAAAACAATGGGCAAGCTCCTTTAT    195

BSNT_02210___    196 TTAGATTCAGGAACGCTCACTCCTATGCTTAAACGAATGGAACA--ACAG    243
                     .|.|||||.||.||.||.||.||.|||||.||..|||||||.||  ||.|
BL03734___ohr    196 CTCGATTCCGGCACACTGACGCCGATGCTGAAGAGAATGGAGCAGCACGG    245

BSNT_02210___    244 GGTTTGATTACGAGAAAAAGATCAGAAGAGGATGAGCGGTCCGT-GTTGA    292
                     |.|||  |.||.|||.|..|.|||...||.|||||.|||||.|| .||| 
BL03734___ohr    246 GCTTT--TAACAAGAGAGCGGTCACCTGAAGATGAACGGTCTGTAATTG-    292

BSNT_02210___    293 TCAGCCTGACAG-AGGACGGAGCGTTATTAAAGGATAAAGCGGTTGA---    338
                     ||||.||||||| ||| |||...|..|.|..|.||.|||||     |   
BL03734___ohr    293 TCAGACTGACAGCAGG-CGGCCAGGCACTCCAAGAAAAAGC-----AAGC    336

BSNT_02210___    339 --CATTCCAGAG-ACA--ATTCTGGGGCTCTCAAAGCAGTCTG--GG--G    379
                       ||||||..|| |||  ||       |.|.||.|.|..||||  ||  |
BL03734___ohr    337 AGCATTCCGCAGCACATGAT-------CGCCCAGACCGATCTGTCGGCTG    379

BSNT_02210___    380 AGGATCTCAAACAGTTAAA--ATCCGCTCTATATACATTGCTGGAAACAC    427
                     ..||.||.|||.|.||.||  |..|||| |..||.|.||..||      |
BL03734___ohr    380 GCGAACTGAAAAACTTGAAGCAAACGCT-TGAATCCCTTCTTG------C    422

BSNT_02210___    428 TTCAT----CAAAAAAATTGA----------    444
                     |||||    .|||||||..||          
BL03734___ohr    423 TTCATTGACGAAAAAAACAGATGTGCTGTAA    453


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