Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03714 and BL03719
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:44
# Commandline: needle
# -asequence dna-align/BSNT_03714___yqgP.1.5803.seq
# -bsequence dna-align/BL03719___gluP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03714___yqgP-BL03719___gluP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03714___yqgP-BL03719___gluP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03714___yqgP
# 2: BL03719___gluP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1754
# Identity: 977/1754 (55.7%)
# Similarity: 977/1754 (55.7%)
# Gaps: 445/1754 (25.4%)
# Score: 2454.0
#
#
#=======================================
BSNT_03714___ 1 ATGTTTTTGCTGGAGTATACATATTGGAAAATT---GCGGCGCACCT--- 44
||||.||...|.||.|||...|||||| |||| .||| |.||||
BL03719___glu 1 ATGTATTCAATCGATTATTTGTATTGG--AATTTCATCGG-GAACCTTTT 47
BSNT_03714___ 45 -----GGTGAAT---AGC--GGGTATG-----GCGTCAT----ACAAGCC 75
|| ||.| ||| |.|.|.| ||.|||| |.|||||
BL03719___glu 48 AGACAGG-GATTTTGAGCTTGTGCAGGCACCTGCTTCATTCGGAGAAGCC 96
BSNT_03714___ 76 GGTGAGTCAGATGAAATATGGCTGGAAGCGCCGGACAAGTCCTCTCATGA 125
|||||.||||||..||..|...|..|..||||
BL03719___glu 97 ------------------TGGCTTGAAGCGAGGGGGAGCGCGCCGTATGA 128
BSNT_03714___ 126 TCTAGTTCGTCTTTAT----AAGCACGATCTTGATTTCCGTCAAGAAATG 171
|.|.||||| |.||.| ||| |||.|.||.|||.|.||.||..|.
BL03719___glu 129 TTTGGTTCG-CGTTTTCCGGAAG---GATATCGACTTCAGACAGGATCTC 174
BSNT_03714___ 172 GTTAGAGACATCGAA---------GAGCAGGCCGAACGAGTAGAACGAGT 212
||..|.|||.|.||| ||...|||.||.||..| || |||
BL03719___glu 175 GTCCGCGACCTGGAATCTCTTTATGAAAGGGCGGAGCGCCT-GA--GAG- 220
BSNT_03714___ 213 CAGACATCAATTGGGCAGACGAAGGATGAAGCTGC-------TGAATGTG 255
||| ||||| ||.||| ||| ||||| | |||||||.
BL03719___glu 221 CAG-CATCA---GGTCAG-CGA------AAGCT-CTCGATATTGAATGTC 258
BSNT_03714___ 256 TTTTTTTCAACGGAAGCCCCTGTTGATGACTGGGAAGAGATTGCAAAAAA 305
|.|||.||...||||||.|||||.|||||.|||||||
BL03719___glu 259 TATTTGTCGCAGGAAGCGCCTGTAGATGAGTGGGAAG------------- 295
BSNT_03714___ 306 AATGTTTGAGAAGGGAACTGTGTCAGTTGAGCCGGCGATCG----TTAGA 351
|||| |||| |.|.|.|||| ||| |.||.
BL03719___glu 296 -ATGT---------------TGTC-GGTCATCCGG---TCGCAGATAAGC 325
BSNT_03714___ 352 GGAACGATGCTTCGAGATGATCTTCAAGCGGTTTTTCCATCATTTCGTCC 401
|||.| .||.|||.| .||||||||
BL03719___glu 326 GGATC--AGCATCGTG-----------CCGGTTTTT-------------- 348
BSNT_03714___ 402 AGAAGATTGTACAGAGGAACACGCTTCGTTTGAAGACG-----CGCAA-- 444
||| ||.|||||||||..||||||.| |||||
BL03719___glu 349 -----ATT--------GATCACGCTTCGGCTGAAGAAGGATTACGCAAAC 385
BSNT_03714___ 445 -----------------ATGGCGC-------------------------- 451
||||.||
BL03719___glu 386 TCGCCGTGGCTTTAAACATGGAGCCGGATGAGCTGACAGGCCAAATGCAG 435
BSNT_03714___ 452 ------------------------GAGAA------CGTTTCCTTTCGCTA 471
||||| || .|
BL03719___glu 436 GATGCCGGATACGAAAATGTGGAAGAGAAGAGAGCCG-----------AA 474
BSNT_03714___ 472 GT----------GCTGAAACAAGAAGAACAGAGAAAAAC----TGAAGCG 507
|| |||.||.|||| ||||.| |||||..| .||||||
BL03719___glu 475 GTATTGGCAGCGGCTAAAGCAAG-AGAAGA-AGAAAGGCGGCGGGAAGCG 522
BSNT_03714___ 508 GCGGTTTTTCAAAACGGAAAACCGTTTTTTGCAT--ATTTATTTATTGC- 554
||.||.|||.|.||.||.||||||.|.|||.|.| |||| |.||
BL03719___glu 523 GCTGTATTTGAGAAAGGCAAACCGATGTTTACCTGGATTT-----TCGCA 567
BSNT_03714___ 555 --GCTTCAGATCCTGATGTTT-TTCTTGCTCGAAATAAACGGG-GGCAGC 600
||||||..||.|.|||||| |.||| ||.||||| ..|||| ||||||
BL03719___glu 568 GTGCTTCAAGTCTTCATGTTTCTGCTT-CTGGAAAT-GTCGGGCGGCAGC 615
BSNT_03714___ 601 ACA-AATACGGAGACGCTGGTCGCTTTTGGAGCAAAAGAAAACAGCCTAA 649
|| |||||.||.|||||.|||...||.||.||.||.|||||||||||..
BL03719___glu 616 -CAGAATACCGAAACGCTCGTCCGGTTCGGGGCGAAGGAAAACAGCCTCC 664
BSNT_03714___ 650 TTGCACAAGGAGAATGGTGGCGGCTTCTGACACCGATCGTGCTTCACATC 699
|...|...||.||||||||||||||..|.||.||||||||.|||||.|||
BL03719___glu 665 TGTTAGCCGGGGAATGGTGGCGGCTAGTCACGCCGATCGTTCTTCATATC 714
BSNT_03714___ 700 GGCATAGCGCATTTAGCT----TTTAATACGCTGGCTTTATGGTCGGTTG 745
||..|.|..||| || ||||||||..|.||.||||.|||.||||
BL03719___glu 715 GGATTGGTCCAT----CTCATGTTTAATACATTTGCATTATTGTCTGTTG 760
BSNT_03714___ 746 GTACAGCGGTTGAGCGGATGTATGGATCGGGGAGATT----TTTGCTG-- 789
|..|.||.|..||..||.|||.|||||| ||| |||..||
BL03719___glu 761 GAGCCGCAGCAGAAAGGGTGTTTGGATC------ATTCCGCTTTCTTGTC 804
BSNT_03714___ 790 ATTTATCTGGCTGCTGGCATTACGGGTTCGATTGCGAGTTTTGTGTTCAG 839
||.||..|..|.||.||.|||...||.|||||.|..||.|||.|||||||
BL03719___glu 805 ATATACATATCAGCCGGGATTTTTGGATCGATCGGCAGCTTTCTGTTCAG 854
BSNT_03714___ 840 CCCGTATCCTTCGGCAGGGGCATCAGGAGCCATATTCGGATGCTTAGGTG 889
.||||||||.||.||||||||.||.||||||||.|||||.|||||.||.|
BL03719___glu 855 TCCGTATCCGTCTGCAGGGGCTTCGGGAGCCATCTTCGGTTGCTTGGGAG 904
BSNT_03714___ 890 CATTACTGTATGTTGCTTTGTCTAATCGAAAAATGTTTTTAAGAACCATA 939
|..|..||||..|.|||||.||.||.||.|||...|||||||.|||.||.
BL03719___glu 905 CCCTTTTGTACCTGGCTTTTTCAAACCGGAAAGCTTTTTTAAAAACGATC 954
BSNT_03714___ 940 GGAACCAATATTATTGTCATTATTATCATCAATCTGGGCTTTGGTTTTGC 989
|||||.|||||.|||||.||.||.||..|.||.||.|||.|.|||||..|
BL03719___glu 955 GGAACAAATATCATTGTGATCATCATTCTGAACCTCGGCCTCGGTTTCAC 1004
BSNT_03714___ 990 AGTTTCAAATATTGATAATTCAGGACATATCGGCGGCTTGATTGGCGGCT 1039
..||||||||.||||.|||.|.||.|||||||||||.|||||.|||||
BL03719___glu 1005 CATTTCAAATGTTGACAATGCTGGCCATATCGGCGGATTGATCGGCGG-- 1052
BSNT_03714___ 1040 TTTTCGCTGCAGCAGCATTGG-GGTTGCCCAAAGCCGGAGCCTTTGGAAA 1088
|.|| ||| .|.||.|||| ||| ||||..|...|||||
BL03719___glu 1053 -TCTC-CTG--ACGGCCTTGGCGGT----------CGGAATCCCCGGAAA 1088
BSNT_03714___ 1089 AAGATTGTTG--TCAGCGGTTTTGCTGATTGCTTTGGCTG---CCGGATT 1133
||.|..|..| .||||| |||| || .||||| ||..||.
BL03719___glu 1089 AAAAAGGCCGCTCCAGCG-----GCTG---GC--AGGCTGGGTCCTCATC 1128
BSNT_03714___ 1134 TTTAT-ATTACGGA----------------TTG-----CATTCGCCTTCA 1161
|||.| || |||| ||| ||||||.||.|.
BL03719___glu 1129 TTTGTCAT--CGGAGGAGGGGCCCTGTACTTTGGGACACATTCGGCTCCG 1176
BSNT_03714___ 1162 CACCAGGAATCAGCGCTGATTCAGCAGGCAAGCGAGCT-GTATCAGGAAG 1210
...||||||...||..||.|.||.||||| .||||..| ||||.|.||.|
BL03719___glu 1177 GTGCAGGAAAATGCCATGCTGCATCAGGC-GGCGAAATGGTATGAAGAGG 1225
BSNT_03714___ 1211 GAAAGTATGAAGAAGTAACAGAATTGC--TGAACGAAGAAGCAGCGCAAA 1258
||.||||||||.||||||..|| ||| ||||.||||..| ||.||||
BL03719___glu 1226 GAGAGTATGAAAAAGTAAAGGA--TGCTTTGAAGGAAGCGG--GCTCAAA 1271
BSNT_03714___ 1259 A--AGATGCCTCTGCCGA-TCTTTTGAAAA---TTCTTGCTGTTTCTGAT 1302
| .||.||.||...||| .|||| || |.||.|||..|||.||.
BL03719___glu 1272 ACCGGACGCTTCCAGCGACACTTT----AAGGCTGCTCGCTTATTCCGAA 1317
BSNT_03714___ 1303 ATTAAAATCGGCGAATATGATCAGGC--------GGTTTCCCTTTTGGAA 1344
|||....|||||||.|||||..|.|| |||||
BL03719___glu 1318 ATTCGGCTCGGCGAGTATGAAAACGCCGAGAAAAGGTTT----------- 1356
BSNT_03714___ 1345 CGAG-----CAGTGAAAAAAGAACCTAAAGACCATGCCTCATATTACTAT 1389
||| | ||..|||||||.||....|||||.||||| |..||||
BL03719___glu 1357 -GAGGCCGTC-GTTGAAAAAGATCCATCGGACCACGCCTC---TCTCTAT 1401
BSNT_03714___ 1390 ----TTAGCCTTATTGTATGCGGAAAAAAATGAGCTTGCACAAGCAGAAA 1435
|| ||||...|.|||.|..|||.|...||||||||..||||.||..
BL03719___glu 1402 AGTCTT-GCCTGGCTTTATACCCAAAGAGGCGAGCTTGCCAAAGCCGAGC 1450
BSNT_03714___ 1436 AGGCCAT-----CAG-GTTGGCTGTGAAACTTAAGCC-GAAGGAGCAGCG 1478
||.|||| .|| ||||||.| || ||||| ||.|.|| ||..
BL03719___glu 1451 AGTCCATTGAAAGAGCGTTGGCAG---AA---AAGCCTGATGAAG-AGAT 1493
BSNT_03714___ 1479 CTACAAGGAGCTTCAGCAACAAATTGAAAACAATAAAG--------AATC 1520
.||.||..||||||.|.|..|||| |||..||.|||| ||
BL03719___glu 1494 GTATAAAAAGCTTCGGGACGAAAT--AAAGAAAGAAAGCGCCCGGTAA-- 1539
BSNT_03714___ 1521 ATAA 1524
BL03719___glu 1539 ---- 1539
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