Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03718 and BL03718
See
Amino acid alignment /
Visit
BSNT_03718 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:44
# Commandline: needle
# -asequence dna-align/BSNT_03718___yqgN.1.5803.seq
# -bsequence dna-align/BL03718___yqgN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03718___yqgN-BL03718___yqgN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03718___yqgN-BL03718___yqgN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03718___yqgN
# 2: BL03718___yqgN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity: 358/638 (56.1%)
# Similarity: 358/638 (56.1%)
# Gaps: 139/638 (21.8%)
# Score: 814.5
#
#
#=======================================
BSNT_03718___ 1 ATGAA---ATCACAATTAAGA---------AAAAAGACGCTGGAGGCACT 38
.|||| .|| .|||.|| |.|||||.||||| ||
BL03718___yqg 1 GTGAAGCGTTC---TTTACGAAGCGAGGTCAGAAAGAGGCTGG-----CT 42
BSNT_03718___ 39 ATC-TGC------------TTTATCAAA----TGAAGATATTCTTCAAAA 71
|.| ||| ||.|.|.|| .||||..||||
BL03718___yqg 43 AACATGCCGGAACAGGAGTTTCACCTAAAGGCGGAAGCGATTC------- 85
BSNT_03718___ 72 AACGGAACGTATGT---ATAAGTACTTGTTTTCTCTGCCGGAGTGGCAAA 118
|.||||| |..|.| ||.|..|| |||||.|||
BL03718___yqg 86 ACCGGAA-GCTTTTCCAATCAAAAC----------------AGTGGAAAA 118
BSNT_03718___ 119 ATGC--CGGCACCATTGCCGTCACTATTTCCAGAGGATTAGAGA--TACC 164
|.|| |.| ..||||||.|.||..|.|||||| |.|.|.|| ||||
BL03718___yqg 119 AAGCGTCTG--TTATTGCCCTTACGGTATCCAGA--AATCGCGAAGTACC 164
BSNT_03718___ 165 GACGCGTCCTGTCATTGAGCAGGCTTGGGAAGAAGGGAAACAAGTTTGCA 214
|||....||..|.||.||.|||||..||...|||||.|||...||.||||
BL03718___yqg 165 GACAAAACCGATTATCGAACAGGCCCGGCTTGAAGGAAAAACGGTGTGCA 214
BSNT_03718___ 215 TCCCAAAATGCCAT-CCGGACACGAAGAAAATGCAATTTCGCACATATCA 263
|.||.||||| .|| ||.||.||.||.||.|||||.|||||||..|||||
BL03718___yqg 215 TTCCGAAATG-TATGCCTGAAACAAAAAAGATGCACTTTCGCAGCTATCA 263
BSNT_03718___ 264 GACTGATGATCAG----CTCGAAACCGTGTATGCCGGACTGCTCGAGCCG 309
| ||||| .|| ||.|||..|||||||...||.||||..||.|||
BL03718___yqg 264 G---GATGA-AAGCGATCTTGAAGTCGTGTATTTTGGCCTGCAGGAACCG 309
BSNT_03718___ 310 GTAATTGAAAAAACAAAA-------GAAGTAAACCCATCACAAATTGACT 352
.|..| |.|||||| ||.|.||.||.| |.|.||.||||
BL03718___yqg 310 ATCGT-----ACACAAAACCGAGCGGATGGAACCCGA--AGACATCGACT 352
BSNT_03718___ 353 TGATGATCGTTCCAGGTGTTTGTTTTGATGTTAACGGGTTTAGGGTCGGC 402
|.||..|.||.||.||..||||.|.|||....|..||.|..||..|||||
BL03718___yqg 353 TCATCCTTGTGCCGGGAATTTGCTATGACCGGAGAGGATACAGAATCGGC 402
BSNT_03718___ 403 TTTGGAGGCGGCTATTATGATCGCTA----------TTTAAGTGAATATG 442
|.||||||||||||||||||..|.|| |||| .
BL03718___yqg 403 TATGGAGGCGGCTATTATGACAGATACCTGGCCGGCTTTA---------C 443
BSNT_03718___ 443 AAGGGAAGACA----GTCTCATTGCTTTTGGAGTGCCAGTTGTATGCG-- 486
|| ||||.| |||.| |||| .||.||||||||..|| || ||
BL03718___yqg 444 AA---AAGATACCGCGTCGC-TTGC-CTTCGAGTGCCAAGTG-AT-CGGT 486
BSNT_03718___ 487 CACGTACCCAGTCTGCCGCATGACATCCCGGTACATAAGCTTGTAACAGA 536
||.||.||.|.|..||||||.|||||||||||..|..||.||.|.||.||
BL03718___yqg 487 CATGTTCCAAATGAGCCGCACGACATCCCGGTCAAGCAGGTTTTGACCGA 536
BSNT_03718___ 537 GGATCG--GATTA----TTTCTTG----TTTTTCATAA 564
.|| || |.||| |..||.| |..|..||||
BL03718___yqg 537 AGA-CGCCGTTTACAACTGCCTCGACACTGCTGAATAA 573
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.