Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03720 and BL03717
See
Amino acid alignment /
Visit
BSNT_03720 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:44
# Commandline: needle
# -asequence dna-align/BSNT_03720___yqgM.1.5803.seq
# -bsequence dna-align/BL03717___yqgM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03720___yqgM-BL03717___yqgM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03720___yqgM-BL03717___yqgM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03720___yqgM
# 2: BL03717___yqgM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1317
# Identity: 653/1317 (49.6%)
# Similarity: 653/1317 (49.6%)
# Gaps: 453/1317 (34.4%)
# Score: 1413.0
#
#
#=======================================
BSNT_03720___ 1 ---------------ATGCTTTCACCCGAACATCC--------CGATGAG 27
.||||.||.|..|||.|||| |||.|||
BL03717___yqg 1 TTGATCAACGTATTGCTGCTGTCGCTGGAAAATCCCCTTTCATCGAAGAG 50
BSNT_03720___ 28 CCGAAAAGCGG---GCTCGGTGACCATTTAAA-CCGCCTCATTTCCTATT 73
|.| ||||| |||..|||| ||| ||.||| |...|||||
BL03717___yqg 51 CGG---AGCGGGGCGCTATGTGA------AAAGCCACCT--TGAACTATT 89
BSNT_03720___ 74 ---TAAAGCCTCATATCAACATTACGGTTTGTACTCCGAGCGG------- 113
.||.| |..|||.|.||||.||.||.||..|| ||.|
BL03717___yqg 90 GCGGAACG----AAGTCAGCTTTACCGTCTGCACGACG-GCTGCCGGGCA 134
BSNT_03720___ 114 -----GCAGTTGTTTTCGTATGCGAA--GTTTGAAGATTACATAGC-TGA 155
|||.| |.|||.||| | .||.|||||.| || |||
BL03717___yqg 135 AAACAGCAAT-------GGATGGGAAACG-CTGGAGATTCC---GCTTGA 173
BSNT_03720___ 156 TGCTAACTTTACAATGGTT------------------------CGCCATG 181
||||.||..||| |||||||
BL03717___yqg 174 -------TTTAAAAGCGTTCGCTTCTTTTGAAGAGGCGGTAGCCGCCATG 216
BSNT_03720___ 182 TGTTATCA------CACAAT----------------GAACGCTTTGATCT 209
..||.||| ||.||| |.||..||||||.|
BL03717___yqg 217 AATTTTCAGATGATCAAAATCGTGCTGGAGCATAGAGGACAATTTGATTT 266
BSNT_03720___ 210 GATTCATGCTCATGATGACACAACAGCCCCTGCCGCCCAGTATTTGAAAC 259
..|.|||||..|.||||.....||.||.|||||||||...|||.| |
BL03717___yqg 267 CGTCCATGCAAACGATGGTGTCACCGCGCCTGCCGCCGTTTATCT----C 312
BSNT_03720___ 260 AACG----GCTTGGC-CTTCCGCTTGCTGCGACAATCCACGGCCTGGAAA 304
|.|| || |||| .|.|||||...|.|.||..|.||||||||.||||
BL03717___yqg 313 AGCGAGGTGC-TGGCGGTGCCGCTGATTTCCACGGTGCACGGCCTTGAAA 361
BSNT_03720___ 305 GCG-------AAAGGAAGAAGGTGTGCCGAGAAGCCCCACACCCATACAG 347
||| |||||.||.|| .|.||.|.|.| |||||||||||
BL03717___yqg 362 GCGGCCGAAAAAAGGCAGCAG----ACGGATATGTC---CACCCATACAG 404
BSNT_03720___ 348 GCTCATGACCGAACGGCTCCTTATAGAATCGGCTG--------------A 383
|...||...|||||||||.|| ||||| |
BL03717___yqg 405 GGCAATCCTCGAACGGCTTCT---------GGCTGAAAAAAGCGATCAAA 445
BSNT_03720___ 384 TGCTTTGGTCGTATTAAGCA-CGTTTATGAAGCGGTCTCTTAATAAGGCA 432
|.| ||||..|.|||| | ||||.| |||.||
BL03717___yqg 446 TCC-----TCGTGCTGAGCAGC----ATGATG------------AAGTCA 474
BSNT_03720___ 433 GCACAT--AAAA-----------------------AAATAACC--GTTAT 455
| |||| |||| |||| || ||.||
BL03717___yqg 475 G-ACATGCAAAAGGCGTTTTCGCTTTCTTTTGAGCAAAT--CCGGGTCAT 521
BSNT_03720___ 456 CCCA-AGCCCTGCATCTATGGAGGAAGAG----AAGGGGAAAATCCAAAG 500
.||| |.||..|||| .||.|| |.||.||||| ||.|
BL03717___yqg 522 TCCACATCCGCGCAT--------AAAAAGCCGCACGGTGAAAA---AACG 560
BSNT_03720___ 501 AAGCATAAATAGAAG------ATTCCTCTTTTCATATGGAAGGTTCGTTC 544
| ||.|| ||| .|.|.|.|||||.||.|||||.||.||||
BL03717___yqg 561 A---ATGAA---AAGCGCGCCCTACTTTTTTTCCTACGGAAGATTTGTTC 604
BSNT_03720___ 545 CGGAAAAAGGATTT-TCGCA--GCTGTTAAAGGTATTTGCCATCTTGAAG 591
||||||||||.||| |||.| |||| .|.||.||| || ||||
BL03717___yqg 605 CGGAAAAAGGGTTTATCGAATTGCTG---CACGTCTTT--CA----GAAG 645
BSNT_03720___ 592 CAGCGTCAG-------CCTGACCTCTATCTAGTGCTGGCTGGGGAGGGGC 634
|..|| ||| |||||.||..|.||.||..|.||.|||||.||||
BL03717___yqg 646 CTACG-CAGCCGGCGTCCTGATCTTGAACTTGTCATTGCCGGGGAAGGGC 694
BSNT_03720___ 635 CGTCTCTGTCCTCCTA--------TGAGA------------AATTGGCTG 664
|| ||.|.| .|||| |||||
BL03717___yqg 695 CG--------CTTCAAAGCGGGATCGAGACCATAGCAAAAGAATTG---- 732
BSNT_03720___ 665 CGGCATATAACCTGAAGGATCGTGTCA----TGTTCCTGCCGTTTCTCAA 710
|||| |.|||||..||||.| |.|||||..|.|||.|.||
BL03717___yqg 733 -GGCA-------TTAAGGACAGTGTGACCATTCTTCCTTTCCTTTGTGAA 774
BSNT_03720___ 711 TAGGAAAGACATCAGAACGTTACTGTCT--CA--ATGTGAAATGGCTGTT 756
.|||||||| .||| .|||.|| || .|||||||||||||||
BL03717___yqg 775 GAGGAAAGA---GAGA-----GCTGGCTGGCATTTTGTGAAATGGCTGTT 816
BSNT_03720___ 757 TTCCCTAGTTCTTATGAACCGTTTGGGCTAGCCGCGCAAGAAAGCATGGA 806
||.||.|||||||||||.|||||.||..|.||.|..|||||||||||||
BL03717___yqg 817 TTTCCAAGTTCTTATGAGCCGTTCGGCATTGCTGTTCAAGAAAGCATGG- 865
BSNT_03720___ 807 ACAAGGTGTGCTGACTGTCGTTTC-----TCAGTCGGGTG-------GTT 844
|.....|.|||| |.||||.|.| ||| .||||.| |.|
BL03717___yqg 866 -CCGCCGGCGCTG-CCGTCGCTGCCGGAATCA-ACGGGGGCTGGAACGAT 912
BSNT_03720___ 845 TTTGTGATTATGCCGTTC--ATGACAAAACGGCAATC--ATCGCTAATTT 890
||.||.|| ||.|| .|||| ||||..|| || |.||||
BL03717___yqg 913 TTCGTTAT-----CGATCGGGTGAC----CGGCTTTCGAAT---TGATTT 950
BSNT_03720___ 891 TACGCTCGTACAGGAAGCGGCTGATCTGCTGGACAGTTTTTTAAAAGACC 940
|| .|||||.|| |.|||.|.
BL03717___yqg 951 TA------------------GTGATCCGC-------------ATAAGGCT 969
BSNT_03720___ 941 GGGAAAAAGCCCGCCGGATAAAAGAAGCTGGCAGACAACAAG-------T 983
|..||...||.||| ||||..||.| |.|||.||| |
BL03717___yqg 970 GCAAATGCGCTCGC--------AGAAATTGTC-GGCAATAAGGAGCAGCT 1010
BSNT_03720___ 984 GTTCAAGCTC-CACCACCCCC---GACTCATTACGTCATCATATTTGCAG 1029
|.|||||.|| .||.|.|..| |.||.|| |||||| |
BL03717___yqg 1011 GCTCAAGGTCGGACAAACGGCAAAGGCTTAT---------ATATTT---G 1048
BSNT_03720___ 1030 CTTT--ATGAGC--GTATCTTCAATAA------TTCAGCAATTCATTGA- 1068
.||| ||||.| |.||.|..||.|| ||..||| ||||..|
BL03717___yqg 1049 ATTTGCATGATCCTGGATATGTAAAAAATATGTTTTTGCA--TCATGTAT 1096
BSNT_03720___ 1068 ----------------- 1068
BL03717___yqg 1097 ATCATACGTCTTTTTAA 1113
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.