Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03720 and BL03717

See Amino acid alignment / Visit BSNT_03720 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:44
# Commandline: needle
#    -asequence dna-align/BSNT_03720___yqgM.1.5803.seq
#    -bsequence dna-align/BL03717___yqgM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03720___yqgM-BL03717___yqgM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03720___yqgM-BL03717___yqgM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03720___yqgM
# 2: BL03717___yqgM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1317
# Identity:     653/1317 (49.6%)
# Similarity:   653/1317 (49.6%)
# Gaps:         453/1317 (34.4%)
# Score: 1413.0
# 
#
#=======================================

BSNT_03720___      1 ---------------ATGCTTTCACCCGAACATCC--------CGATGAG     27
                                    .||||.||.|..|||.||||        |||.|||
BL03717___yqg      1 TTGATCAACGTATTGCTGCTGTCGCTGGAAAATCCCCTTTCATCGAAGAG     50

BSNT_03720___     28 CCGAAAAGCGG---GCTCGGTGACCATTTAAA-CCGCCTCATTTCCTATT     73
                     |.|   |||||   |||..||||      ||| ||.|||  |...|||||
BL03717___yqg     51 CGG---AGCGGGGCGCTATGTGA------AAAGCCACCT--TGAACTATT     89

BSNT_03720___     74 ---TAAAGCCTCATATCAACATTACGGTTTGTACTCCGAGCGG-------    113
                        .||.|    |..|||.|.||||.||.||.||..|| ||.|       
BL03717___yqg     90 GCGGAACG----AAGTCAGCTTTACCGTCTGCACGACG-GCTGCCGGGCA    134

BSNT_03720___    114 -----GCAGTTGTTTTCGTATGCGAA--GTTTGAAGATTACATAGC-TGA    155
                          |||.|       |.|||.|||  | .||.|||||.|   || |||
BL03717___yqg    135 AAACAGCAAT-------GGATGGGAAACG-CTGGAGATTCC---GCTTGA    173

BSNT_03720___    156 TGCTAACTTTACAATGGTT------------------------CGCCATG    181
                            ||||.||..|||                        |||||||
BL03717___yqg    174 -------TTTAAAAGCGTTCGCTTCTTTTGAAGAGGCGGTAGCCGCCATG    216

BSNT_03720___    182 TGTTATCA------CACAAT----------------GAACGCTTTGATCT    209
                     ..||.|||      ||.|||                |.||..||||||.|
BL03717___yqg    217 AATTTTCAGATGATCAAAATCGTGCTGGAGCATAGAGGACAATTTGATTT    266

BSNT_03720___    210 GATTCATGCTCATGATGACACAACAGCCCCTGCCGCCCAGTATTTGAAAC    259
                     ..|.|||||..|.||||.....||.||.|||||||||...|||.|    |
BL03717___yqg    267 CGTCCATGCAAACGATGGTGTCACCGCGCCTGCCGCCGTTTATCT----C    312

BSNT_03720___    260 AACG----GCTTGGC-CTTCCGCTTGCTGCGACAATCCACGGCCTGGAAA    304
                     |.||    || |||| .|.|||||...|.|.||..|.||||||||.||||
BL03717___yqg    313 AGCGAGGTGC-TGGCGGTGCCGCTGATTTCCACGGTGCACGGCCTTGAAA    361

BSNT_03720___    305 GCG-------AAAGGAAGAAGGTGTGCCGAGAAGCCCCACACCCATACAG    347
                     |||       |||||.||.||    .|.||.|.|.|   |||||||||||
BL03717___yqg    362 GCGGCCGAAAAAAGGCAGCAG----ACGGATATGTC---CACCCATACAG    404

BSNT_03720___    348 GCTCATGACCGAACGGCTCCTTATAGAATCGGCTG--------------A    383
                     |...||...|||||||||.||         |||||              |
BL03717___yqg    405 GGCAATCCTCGAACGGCTTCT---------GGCTGAAAAAAGCGATCAAA    445

BSNT_03720___    384 TGCTTTGGTCGTATTAAGCA-CGTTTATGAAGCGGTCTCTTAATAAGGCA    432
                     |.|     ||||..|.|||| |    ||||.|            |||.||
BL03717___yqg    446 TCC-----TCGTGCTGAGCAGC----ATGATG------------AAGTCA    474

BSNT_03720___    433 GCACAT--AAAA-----------------------AAATAACC--GTTAT    455
                     | ||||  ||||                       ||||  ||  ||.||
BL03717___yqg    475 G-ACATGCAAAAGGCGTTTTCGCTTTCTTTTGAGCAAAT--CCGGGTCAT    521

BSNT_03720___    456 CCCA-AGCCCTGCATCTATGGAGGAAGAG----AAGGGGAAAATCCAAAG    500
                     .||| |.||..||||        .||.||    |.||.|||||   ||.|
BL03717___yqg    522 TCCACATCCGCGCAT--------AAAAAGCCGCACGGTGAAAA---AACG    560

BSNT_03720___    501 AAGCATAAATAGAAG------ATTCCTCTTTTCATATGGAAGGTTCGTTC    544
                     |   ||.||   |||      .|.|.|.|||||.||.|||||.||.||||
BL03717___yqg    561 A---ATGAA---AAGCGCGCCCTACTTTTTTTCCTACGGAAGATTTGTTC    604

BSNT_03720___    545 CGGAAAAAGGATTT-TCGCA--GCTGTTAAAGGTATTTGCCATCTTGAAG    591
                     ||||||||||.||| |||.|  ||||   .|.||.|||  ||    ||||
BL03717___yqg    605 CGGAAAAAGGGTTTATCGAATTGCTG---CACGTCTTT--CA----GAAG    645

BSNT_03720___    592 CAGCGTCAG-------CCTGACCTCTATCTAGTGCTGGCTGGGGAGGGGC    634
                     |..|| |||       |||||.||..|.||.||..|.||.|||||.||||
BL03717___yqg    646 CTACG-CAGCCGGCGTCCTGATCTTGAACTTGTCATTGCCGGGGAAGGGC    694

BSNT_03720___    635 CGTCTCTGTCCTCCTA--------TGAGA------------AATTGGCTG    664
                     ||        ||.|.|        .||||            |||||    
BL03717___yqg    695 CG--------CTTCAAAGCGGGATCGAGACCATAGCAAAAGAATTG----    732

BSNT_03720___    665 CGGCATATAACCTGAAGGATCGTGTCA----TGTTCCTGCCGTTTCTCAA    710
                      ||||       |.|||||..||||.|    |.|||||..|.|||.|.||
BL03717___yqg    733 -GGCA-------TTAAGGACAGTGTGACCATTCTTCCTTTCCTTTGTGAA    774

BSNT_03720___    711 TAGGAAAGACATCAGAACGTTACTGTCT--CA--ATGTGAAATGGCTGTT    756
                     .||||||||   .|||     .|||.||  ||  .|||||||||||||||
BL03717___yqg    775 GAGGAAAGA---GAGA-----GCTGGCTGGCATTTTGTGAAATGGCTGTT    816

BSNT_03720___    757 TTCCCTAGTTCTTATGAACCGTTTGGGCTAGCCGCGCAAGAAAGCATGGA    806
                     ||.||.|||||||||||.|||||.||..|.||.|..||||||||||||| 
BL03717___yqg    817 TTTCCAAGTTCTTATGAGCCGTTCGGCATTGCTGTTCAAGAAAGCATGG-    865

BSNT_03720___    807 ACAAGGTGTGCTGACTGTCGTTTC-----TCAGTCGGGTG-------GTT    844
                      |.....|.|||| |.||||.|.|     ||| .||||.|       |.|
BL03717___yqg    866 -CCGCCGGCGCTG-CCGTCGCTGCCGGAATCA-ACGGGGGCTGGAACGAT    912

BSNT_03720___    845 TTTGTGATTATGCCGTTC--ATGACAAAACGGCAATC--ATCGCTAATTT    890
                     ||.||.||     ||.||  .||||    ||||..||  ||   |.||||
BL03717___yqg    913 TTCGTTAT-----CGATCGGGTGAC----CGGCTTTCGAAT---TGATTT    950

BSNT_03720___    891 TACGCTCGTACAGGAAGCGGCTGATCTGCTGGACAGTTTTTTAAAAGACC    940
                     ||                  .|||||.||             |.|||.|.
BL03717___yqg    951 TA------------------GTGATCCGC-------------ATAAGGCT    969

BSNT_03720___    941 GGGAAAAAGCCCGCCGGATAAAAGAAGCTGGCAGACAACAAG-------T    983
                     |..||...||.|||        ||||..||.| |.|||.|||       |
BL03717___yqg    970 GCAAATGCGCTCGC--------AGAAATTGTC-GGCAATAAGGAGCAGCT   1010

BSNT_03720___    984 GTTCAAGCTC-CACCACCCCC---GACTCATTACGTCATCATATTTGCAG   1029
                     |.|||||.|| .||.|.|..|   |.||.||         ||||||   |
BL03717___yqg   1011 GCTCAAGGTCGGACAAACGGCAAAGGCTTAT---------ATATTT---G   1048

BSNT_03720___   1030 CTTT--ATGAGC--GTATCTTCAATAA------TTCAGCAATTCATTGA-   1068
                     .|||  ||||.|  |.||.|..||.||      ||..|||  ||||..| 
BL03717___yqg   1049 ATTTGCATGATCCTGGATATGTAAAAAATATGTTTTTGCA--TCATGTAT   1096

BSNT_03720___   1068 -----------------   1068
                                      
BL03717___yqg   1097 ATCATACGTCTTTTTAA   1113


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