Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00509 and BL03702
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_00509___yceA.1.5803.seq
# -bsequence dna-align/BL03702.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00509___yceA-BL03702.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00509___yceA-BL03702.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00509___yceA
# 2: BL03702
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1066
# Identity: 484/1066 (45.4%)
# Similarity: 484/1066 (45.4%)
# Gaps: 428/1066 (40.2%)
# Score: 907.5
#
#
#=======================================
BSNT_00509___ 1 ATG--GAAA----TGTTTGACTTGGAATTCATGCGACGAGCTTTTCTAGC 44
||| ||.| |.|||.|.|..||.||..|||.|...||||||.|..|
BL03702 1 ATGCTGACACCTTTTTTTCATTATGAGTTTTTGCAAAACGCTTTTATTTC 50
BSNT_00509___ 45 AGGCGGCA----TGATCGCCGTCATGGCTCCGATACTAGGAGTGTATC-T 89
||| | |.||||.|.||||.||.||..|.||.||.||.| || |
BL03702 51 AGG----AATATTAATCGGCCTCATCGCGCCCTTGCTCGGCGTAT-TCAT 95
BSNT_00509___ 90 CGTTCTCAGAAGACAGGCCTTAATGGCTGACACACTTTCACATAT---CT 136
||||.||||..|.|.| |.||||| ||.||.|| ||
BL03702 96 CGTTGTCAGGCGGCTG-------TCGCTGA-------TCGCAGATGCGCT 131
BSNT_00509___ 137 CATTGTCAGGTGTTGCCATCGGCTTTTTTCTCAGCA----------CCAA 176
|| |||| ||.||.|||...|.||| ||..
BL03702 132 CA------------GCCA-CGTCTCTTTAGCCGGCATAGCAGCGAGCCTG 168
BSNT_00509___ 177 TATAACCGCA-GCAAGCA-----TAGTCGTCGTGACCA----TCGGCGCG 216
||| ||| ||||.|| .|||..||| || ||.||.||
BL03702 169 TAT----GCAGGCAAACAGTTTGCAGTGCTCG----CAGGAGTCAGCCCG 210
BSNT_00509___ 217 A------TCGGAATTGAATACATGCGGCGGGCGTAT--------CGGAC- 251
| ||||||| |||||.| ||| |
BL03702 211 ATCTATTTCGGAAT---------------GGCGTTTTCCGTTGCCGG-CT 244
BSNT_00509___ 252 --TTATTC------------AGAAGTGT------CCATTGCCATCTTAAT 281
|||.|| ||||..|| .||||.|||
BL03702 245 CTTTAATCATCGAGAGGCTGAGAACGGTTTATAAACATTACCA------- 287
BSNT_00509___ 282 GGCAGCTGG---------TT----TGTC--------------CTTCGCGA 304
|.|||||| || |||| .||| ||.
BL03702 288 -GGAGCTGGCGATCCCGATTATCATGTCGGGGGGAATCGGCATTTC-CGT 335
BSNT_00509___ 305 TGTTTTTAATCAGCCTTTCCAAAGGCACAGCCAATATGAGCATTGA-TCA 353
|.|||||| |||| || .||.|.|..|| |||
BL03702 336 TATTTTTA-------TTTC----------GC----TTGCGGACGGATTCA 364
BSNT_00509___ 354 ATACCTATTTGGATCGCTTGTGACAGTAAACCAGCAGCAGGTCTATATT- 402
|||| |||||..|| |||.|.|.||||
BL03702 365 ATAC------GGATCTGTT------------------CAGCTATTTATTC 390
BSNT_00509___ 403 ------ATCAG---TATTATCAC----------ACTGCTGATC--CTGCT 431
.|||| |.|| |||| .|||.||||| |.||.
BL03702 391 GGCAGCGTCAGCGCTGTT-TCACGGGAAGACATGCTGGTGATCGTCGGCA 439
BSNT_00509___ 432 TT----------ATTTTATCGTACTG--------------AGAAGGCCGC 457
|| .|||.|||||..|| ||| ||
BL03702 440 TTTCCGCAGCCGTTTTGATCGTGGTGTTTTCCCTTTTTAAAGA-----GC 484
BSNT_00509___ 458 TCTACCTGCTGACGTTTGATGAAGCAACA-GCCAAAACATCGGGAATCAA 506
|.|..||.|||.|||||||||||| |.|| ||.|||.|.||.||.||...
BL03702 485 TGTTTCTTCTGTCGTTTGATGAAG-AGCATGCAAAAGCTTCAGGGATTTC 533
BSNT_00509___ 507 TACAAACGTTCTCTCGTTGTCATTCA--------GTATTGTCACAGGCCT 548
..|||| ||.| ||||| .||||.|.| .|.|
BL03702 534 CGCAAA---------GTGG--ATTCATTTTATTTTTATTTTGA---TCGT 569
BSNT_00509___ 549 TGCGATTTCAGTCATTAT-TCCG-----------ATCATCGGGGTCCTTC 586
||||.|| .|||| .||| |||.||||....||||
BL03702 570 TGCGCTT------GTTATCGCCGCCTCAATGAGAATCGTCGGTACGCTTC 613
BSNT_00509___ 587 TTGTATCAGCCCTGCT-------CGTATTGCCGGCAGCATTCGCCATCAG 629
|.||.|||||.|||.| |.|.|.||.|..|||||.|||
BL03702 614 TCGTTTCAGCGCTGATGACGCTCCCTGTCGCTGCGAGCATGCGC------ 657
BSNT_00509___ 630 AATTGCAAAAGGCTTTAA-CATGG---TTTTCATTACAGCCATACT---- 671
|||||.|||||.||||| || || |||||.| |.|.||.||
BL03702 658 -ATTGCCAAAGGATTTAAGCA-GGCGATTTTCTT---ATCGATCCTGTTC 702
BSNT_00509___ 672 ------CATTTCGTTAT--TCAGCGTATTTACGGGACTGACATCATC-CT 712
|.||.|||.|| ||.||.| |.|.|..|.|| |||||| |.
BL03702 703 GGTGAACTTTCCGTCATCGTCGGCCT-TGTGCTTGCCT---ATCATCTCG 748
BSNT_00509___ 713 ATC---------------AGCTCGGGACGCCGCCAGGTCCGTCTATTACC 747
||| .|.|||.||.|| .|||..||| |||.|
BL03702 749 ATCTTGCACCGGGGGGAACGATCGTGATGC-----TGTCGATCT-TTATC 792
BSNT_00509___ 748 CTGCTATTGATTGTTTTGC--------TATTAA--TC-------GGATTT 780
|||.||.|| ||| ||.||| || |||||.
BL03702 793 CTGATACTG-------TGCATCAGTTATAATAAAGTCAAAAGGAGGATTC 835
BSNT_00509___ 781 GCAGTTCAGGGAGTTTGGACGTTTATCAAAAAAGAAGC---TCAGCGCAA 827
||.| ||.|||| |.|.||||| |.|
BL03702 836 GCCG-----------TGAACGT-------ACAGGAAGCGCTTGA------ 861
BSNT_00509___ 828 AAAAAGGCATCGATAA 843
BL03702 861 ---------------- 861
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