Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00507 and BL03701
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_00507___ycdI.1.5803.seq
# -bsequence dna-align/BL03701.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00507___ycdI-BL03701.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00507___ycdI-BL03701.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00507___ycdI
# 2: BL03701
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 911
# Identity: 430/911 (47.2%)
# Similarity: 430/911 (47.2%)
# Gaps: 349/911 (38.3%)
# Score: 850.5
#
#
#=======================================
BSNT_00507___ 1 ATGAATC-TCGTCTCATTGAAA-GA------TATCGTTTTCGGCTATTCC 42
.||||.| .|.|.|.||||||| || ||||.|.||| ||||...
BL03701 1 TTGAAACAACCTATTATTGAAATGAAGCATGTATCATATTC--CTATGAT 48
BSNT_00507___ 43 CATACGC-CTGTTTTAGATA-AAG-TATCACTT--GATATTGA--AAGCG 85
||| ||| .||| |||| ||| |||.|.|| .|.||||| ||| |
BL03701 49 CAT-CGCAATGT----GATAGAAGATATAAATTTGCAAATTGAAGAAG-G 92
BSNT_00507___ 86 GTGAGTTCGTCGGCATCACTGGGCCAAACGGCGCCTCTAAATCGAC---G 132
|....||| |||||.|...|||.||||||||..|....||..|||| |
BL03701 93 GACTTTTC-TCGGCCTGGTTGGTCCAAACGGATCGGGAAAGACGACATTG 141
BSNT_00507___ 133 CTCATAAAGGTAATGC----TGGGCATGCTGAAACCGTGGGAAGGC---- 174
|| |.||||| ||||..||.|.||.|||..|..||||
BL03701 142 CT-------GAAATGCATTTTGGGGCTGATTAAGCCGCAGACAGGCGAAC 184
BSNT_00507___ 175 ----ACAG--TGACG-----ATCAGTAA----AAGGAATACAGAAGGGAA 209
||.| ||.|| .||||.|| |||||.|..| |.||
BL03701 185 TTAAACTGTTTGGCGTTCCTCTCAGAAAATTTAAGGACTGGA----GCAA 230
BSNT_00507___ 210 ACGCCTGACCATAGGGTACGTCCCGC----AGCAAATTTCTTCA--TTTA 253
| ||.||.|.|||..|.| |||||| || ||||
BL03701 231 A---------ATCGGCTTCGTATCCCAAAAAGCAAA------CAGCTTTA 265
BSNT_00507___ 254 ATGCCGGCTTTCC-------------GA-------GCA--CGGT------ 275
|..||||.||||| || ||| ||||
BL03701 266 ACACCGGTTTTCCCGCTTCTGTTTATGAAGTGGTGGCAAGCGGTTTAACC 315
BSNT_00507___ 276 -----GCTGGAGCTTGTTCAGTC---------AGGCCGCTATACAAAAGG 311
|||.| ||||.|||||.| |.||||.||..||.||||
BL03701 316 GCAAAGCTCG-GCTTATTCAGACGCATGTCCAAAGCCGATAAGCAGAAGG 364
BSNT_00507___ 312 GAAATGGTTTAAACGTTTAAATGAAGAAGAT-----CATCTTGAAGTAGA 356
|||.|.||.||.| .||||.| |||| |.||
BL03701 365 ----TGGATGAAGCGAT-------CGAAGCTGTCGGCATC---ACGT--- 397
BSNT_00507___ 357 AAAAGCACTGAAAATGGTGGAAATGTGGGAGCTCCGTCATCGTAAAATCG 406
|.|||||| |.|| |.||.||||
BL03701 398 -----CCCTGAAA----------------------GACA--GAAACATCG 418
BSNT_00507___ 407 GTGATTTATCAGGCGGACAGAAACAGAAAATCTGT-ATCGCCAGAATGCT 455
|.||..|.||.||.||||||.|.||||.|| ||.| |||||.|||..|||
BL03701 419 GCGAGCTTTCGGGAGGACAGCAGCAGAGAA-CTTTCATCGCGAGAGCGCT 467
BSNT_00507___ 456 CGCCAGCAACCCGGATCTGCTGATGCTGGACGAACCGACGACAGCTGTT- 504
.|..|||.|.|||.|.|||||.||.||.|||||.|||||| |||
BL03701 468 GGTGAGCGAACCGAAGCTGCTCATTCTTGACGAGCCGACG------GTTG 511
BSNT_00507___ 505 GATTACGACAGCAGAA--------AAGGATTTTAC-----------GAAT 535
||.| || |.||.|| ||||.|||||| |||.
BL03701 512 GAGT-CG--ATCAAAAAACAGTTGAAGGGTTTTACAAGCTGCTGGAGAAA 558
BSNT_00507___ 536 TTATGCATCACCTTGTGAAAAA----------TCA-------CAACC--- 565
| ||.||| |||||||| ||| ||.||
BL03701 559 T--TGAATC-----GTGAAAAAGGCATTACGCTCATTCTTGTCACCCATG 601
BSNT_00507___ 566 ------GCACAGTTGT--GAT--GGTTACTCACG--------AACAAAAC 597
||||.||| | ||| .||.||.|||| |..||.|
BL03701 602 ATGTCGGCACGGTT-TCCGATAAAGTCACACACGTTGCCTGCATGAATA- 649
BSNT_00507___ 598 GAAGTACAGCA-----ATTTTTAGATAAAGTGATTCG--ATTAGAG-AGA 639
|||| |||||.| || |.||.|| |||
BL03701 650 -------AGCATCTTCATTTTCA------------CGGCAATACAGAAGA 680
BSNT_00507___ 640 G---GAGAAAAAGGCGGATGGAAATGTTTGACTTG---GAATT------- 676
| |||...|.|.|.|||..| |||||| .||||
BL03701 681 GTTTGAGTCCATGACAGATCAA-------GACTTGTCTCAATTTTACGGG 723
BSNT_00507___ 677 CATGCGACGAGCTTTTCTAG------------------------------ 696
||| |.|.|||.||
BL03701 724 CAT-------GATGTTCAAGCCATCAGCCACAATCACCATCATCATGGAG 766
BSNT_00507___ 696 ----------- 696
BL03701 767 GACACGAATAA 777
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