Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03747 and BL03698

See Amino acid alignment / Visit BSNT_03747 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence dna-align/BSNT_03747___yqfR.1.5803.seq
#    -bsequence dna-align/BL03698___yqfR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03747___yqfR-BL03698___yqfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03747___yqfR-BL03698___yqfR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03747___yqfR
# 2: BL03698___yqfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1371
# Identity:     997/1371 (72.7%)
# Similarity:   997/1371 (72.7%)
# Gaps:          78/1371 ( 5.7%)
# Score: 3576.0
# 
#
#=======================================

BSNT_03747___      1 ATGTGCCGCTTTAAGGAGCTGGGAAAAATGAAAGAAACGAAATTTGAACT     50
                                                ||||||.||||||||||||||.|
BL03698___yqf      1 ---------------------------ATGAAACAAACGAAATTTGAAAT     23

BSNT_03747___     51 TTATGAATTGAAACCATTTATTATAGATGCAGTACATCGCCTTGGTTTTT    100
                     .||.||.||.||.||.|||||||||||.||.||.||.|.|.|.||.||||
BL03698___yqf     24 GTACGATTTAAAGCCGTTTATTATAGAGGCTGTTCACCACTTGGGATTTT     73

BSNT_03747___    101 ACGAACCAACTGATATCCAGAAAAGGCTGATTCCTGCAGTGTTAAAAAAA    150
                     |.||.||.||||||||.||.||..||.|.||.|||||.|.|.|.|||...
BL03698___yqf     74 ATGAGCCGACTGATATTCAAAAGCGGTTAATCCCTGCGGCGCTGAAAGGG    123

BSNT_03747___    151 GAAAGCGTCATCGGCCAGTCTCAGACGGGTACTGGAAAGACTCACGCTTA    200
                     ||.||||..|||||.|||||.|||||.|||||.|||||.||.|||||.||
BL03698___yqf    124 GAGAGCGCGATCGGGCAGTCGCAGACAGGTACGGGAAAAACGCACGCCTA    173

BSNT_03747___    201 TTTACTGCCTTTATTAAACAAAATCGATCCTGCTAAGGATGTCGTTCAGG    250
                     |.|.||.||..|.||||.||..||||||||||..|||||..|||||||.|
BL03698___yqf    174 TCTGCTCCCGCTTTTAAGCAGGATCGATCCTGAAAAGGAGTTCGTTCAAG    223

BSNT_03747___    251 TAGTCATTACGGCTCCGACAAGAGAGCTAGCCAACCAGATTTATCAGGAA    300
                     |.||.|||||||||||||||||.|||||.||||||||||||.||||||||
BL03698___yqf    224 TCGTGATTACGGCTCCGACAAGGGAGCTGGCCAACCAGATTCATCAGGAA    273

BSNT_03747___    301 GCGCTTAAAATCACGC--------AGGG--TGAGGAAGGCAGTCAGATTC    340
                     |..||.|||||||| |        ||||  |||.||||      .|||||
BL03698___yqf    274 GTTCTGAAAATCAC-CAAGTTTTTAGGGCCTGATGAAG------CGATTC    316

BSNT_03747___    341 GCTCGAAATGTTTTATCGGAGGCACTGATAAACAAAAATCAATTGATAAA    390
                     |.|||||||||||.|||||.||.||.||||||||||||||.|||||.|||
BL03698___yqf    317 GTTCGAAATGTTTCATCGGCGGTACCGATAAACAAAAATCGATTGACAAA    366

BSNT_03747___    391 TTGAAAATACAGCCGCATCTGGTTGTCGGTACACCCGGACGGATTGCTGA    440
                     ||.||||..|||||.||||||||.||.|||||.||.||.||.|||||.||
BL03698___yqf    367 TTAAAAACGCAGCCCCATCTGGTGGTAGGTACGCCGGGGCGAATTGCAGA    416

BSNT_03747___    441 CTTAATCAAAGAACAGGCGTTAAGTGTTCATAAAGCGGAATCTCTTGTTA    490
                     |.|.||||..||.||||||.|...||||||||||||.|..||..|.||||
BL03698___yqf    417 CCTGATCAGGGAGCAGGCGCTCGATGTTCATAAAGCCGGTTCGTTCGTTA    466

BSNT_03747___    491 TTGATGAAGCGGATCTAATGCTGGACATGGGATTCCTTGCAGATGTAGAT    540
                     ||||.||.|||||..|||||||.||.||||||||..|.|.||||||.|||
BL03698___yqf    467 TTGACGAGGCGGACTTAATGCTTGATATGGGATTTTTGGAAGATGTCGAT    516

BSNT_03747___    541 TACATCGGTTCCCGCATGCCTG-AGGATCTGCAAATGCTTGTGTTCTCAG    589
                     |..|||||.||.|..|||||.| |||.| ||||.||||||||.||.||.|
BL03698___yqf    517 TTTATCGGGTCGCATATGCCGGAAGGCT-TGCAGATGCTTGTATTTTCCG    565

BSNT_03747___    590 CGACCATACCGGAAAAGCTGAAACCATTTTTGAAGAAATACATGGAAAAT    639
                     |.||.||.||.|||||..|.||.||.||..||||.||||||||||..|||
BL03698___yqf    566 CAACGATTCCCGAAAAATTAAAGCCTTTCCTGAAAAAATACATGGCCAAT    615

BSNT_03747___    640 CCGAAATACGCCCATGTGGAGCCAAAACAGGTGACTGCTGCGAAAATCGA    689
                     ||||..||.||.|||||.|||||.||.||..|.||.||||..||||||||
BL03698___yqf    616 CCGAGGTATGCACATGTTGAGCCGAAGCACATCACGGCTGAAAAAATCGA    665

BSNT_03747___    690 GCATATCCTCATTCCTTCGAAACATCGTGACAAGGACAAGCTCCTTTTTG    739
                     .||..|.||.||.|||||.|..||..|.||.||..|..||||.||..|.|
BL03698___yqf    666 ACACGTGCTGATACCTTCCAGGCACAGGGATAAAAATGAGCTGCTGCTCG    715

BSNT_03747___    740 ACATCATGTCGCATCTGAATCCATACTTGGGGATTGTGTTTGCCAACACG    789
                     |..|||||.|.|||.|.|||||.||.||||.||||||.||.|||||.||.
BL03698___yqf    716 AGGTCATGACCCATTTAAATCCGTATTTGGCGATTGTTTTCGCCAATACA    765

BSNT_03747___    790 AAAAATACGGCTGACCATATTGCCCAGTATCTGACTGGCAAAGGCATGAA    839
                     ||||..|||||.|||.|.||.|||...||||||||.|.||||||.|||||
BL03698___yqf    766 AAAACAACGGCCGACGAGATCGCCGCTTATCTGACGGACAAAGGGATGAA    815

BSNT_03747___    840 AATCGG-CTTGCTGCACGGCGGATTAACACCACGTGAGCGGAAAAAAGTC    888
                     |.|||| ||| ||||||||.||..|.||.||.||.||.||.||||||||.
BL03698___yqf    816 AGTCGGACTT-CTGCACGGGGGGCTTACGCCGCGGGAACGAAAAAAAGTG    864

BSNT_03747___    889 ATGAAGCAGATCAATGATTTGGAATTCACTTATGTCATTGCAACTGACCT    938
                     ||||||||.|||...|||.||||||||||.|||.||||.||.|||||..|
BL03698___yqf    865 ATGAAGCAAATCGGCGATCTGGAATTCACCTATATCATAGCCACTGATTT    914

BSNT_03747___    939 TGCCGCAAGAGGTATTGATATTAAAGGTGTCAGCCATGTTATCAACTATG    988
                     .||.|||||.||.||.|||||||||||.|||||||||||.||.|||||||
BL03698___yqf    915 GGCTGCAAGGGGAATCGATATTAAAGGCGTCAGCCATGTCATTAACTATG    964

BSNT_03747___    989 AGCTGCCGGATGATCTCGATTTCTATGTTCACCGTGTGGGCAGAACGGCT   1038
                     |.|||||.||||||||.||.||.||.||||||||.||.|||.|.||.||.
BL03698___yqf    965 AACTGCCTGATGATCTTGACTTTTACGTTCACCGCGTCGGCCGTACAGCG   1014

BSNT_03747___   1039 CGTGCCGGCTCATCAGGACAAGCGATGACCATTTATGAGCTTA---CTGA   1085
                     ||.|||||..||||.|||..||||.||||..|||||||   ||   ||||
BL03698___yqf   1015 CGCGCCGGAACATCCGGAACAGCGGTGACGTTTTATGA---TACATCTGA   1061

BSNT_03747___   1086 TGAGGATGCATTAGT-AAGACTTGAAAAAATGGGCATCGAATTTGATTAC   1134
                     |||.||||||.|.|| ||| ||||||.|.|||||.||||..|||||..||
BL03698___yqf   1062 TGAAGATGCACTTGTGAAG-CTTGAACAGATGGGGATCGTGTTTGAAAAC   1110

BSNT_03747___   1135 TTAGA-GCTTGAAAAGGGCGAATGGAAAAAAGGCGATGACCGTCAGCGCC   1183
                     .| || |.|||||||.|||||.||||||||...|||||||||..||||||
BL03698___yqf   1111 AT-GAGGATTGAAAAAGGCGAGTGGAAAAAGATCGATGACCGCAAGCGCC   1159

BSNT_03747___   1184 GCAAAAAGCGTAAAAAAACGCCGAATGAAGCGGATGAAATTGCTCATCGT   1233
                     |..|.||.||.||||.||||||..|||||.|||||||..|.||..|.||.
BL03698___yqf   1160 GTCAGAACCGAAAAAGAACGCCTGATGAAACGGATGAGGTCGCCAAGCGG   1209

BSNT_03747___   1234 CTCGTGAAAAAGCCGAAGAAGGTTAAGCCTGGGTATAAAAAGAAAATGAG   1283
                     ||.||||||||.||||..||.||.||||||||.|||||.|||||||||  
BL03698___yqf   1210 CTTGTGAAAAAACCGAGAAAAGTCAAGCCTGGATATAAGAAGAAAATG--   1257

BSNT_03747___   1284 CTATGAGATGGAGAAAATC-----AAGAAAAA-ACAG---AGAAGAAACC   1324
                         .|||.||   |||||     ||.||||| ||||   |.||||||.|
BL03698___yqf   1258 ----CAGACGG---AAATCCAAAAAATAAAAAGACAGCAAAAAAGAAAGC   1300

BSNT_03747___   1325 AATCTAAGAAAA-GAAAGTAG   1344
                     ||| |.|||||| ||||||||
BL03698___yqf   1301 AAT-TTAGAAAAGGAAAGTAG   1320


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