Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03752 and BL03697
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_03752___yqfO.1.5803.seq
# -bsequence dna-align/BL03697___yqfO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03752___yqfO-BL03697___yqfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03752___yqfO-BL03697___yqfO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03752___yqfO
# 2: BL03697___yqfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1171
# Identity: 830/1171 (70.9%)
# Similarity: 830/1171 (70.9%)
# Gaps: 98/1171 ( 8.4%)
# Score: 2815.5
#
#
#=======================================
BSNT_03752___ 1 ATGGATAAAAGTG-TAAATGGGCAGCAGATCATCCAGCTGTTTGAACAAT 49
|| ||.||||..| ||||.|||||..|.|||||.||..||||||||||.|
BL03697___yqf 1 AT-GACAAAAACGATAAACGGGCATGAAATCATTCAATTGTTTGAACAGT 49
BSNT_03752___ 50 TTTCTCCGAAAGCCTAT-GCGGTTGAAGGAGATAAAATCGGCCTGCAAAT 98
|.||.|| .|||.||.| ||.|||||||||||||||||||||||||||||
BL03697___yqf 50 TCTCGCC-TAAGTCTTTAGCCGTTGAAGGAGATAAAATCGGCCTGCAAAT 98
BSNT_03752___ 99 CGGCACTTTAAACAAA-------CCAATTAAAAATGTGATGGTTACACTT 141
||||||..|.|||||| || |||||.|||||.||.|||
BL03697___yqf 99 CGGCACGCTGAACAAAACGGTGGCC-------AATGTCATGGTCACGCTT 141
BSNT_03752___ 142 GATGTGTT---AGAGAGCGTTATCGATGAAGCGATTGAAAAAGAGGTTGA 188
|||||..| |||.|..||| |||||||||||.|.|||..|.|||||
BL03697___yqf 142 GATGTTCTCGAAGAAACGGTT---GATGAAGCGATCGCAAAGAACGTTGA 188
BSNT_03752___ 189 CTTGATTATTGCACACCATCCTCCTATTTTCCGGCCGCTAAAGCATATTT 238
.||.||||||||.||||||||.|||.|||||.|||||||.|| |.||.|
BL03697___yqf 189 TTTAATTATTGCGCACCATCCCCCTGTTTTCAGGCCGCTGAA--ACATGT 236
BSNT_03752___ 239 CA--ACAGATCAGCCTGCCGGAAGGTTAATTGAAAAGTGTTTGAAGCATG 286
|| |||||||||||.|.|||||||.|.||.||||||||..|.|||||||
BL03697___yqf 237 CATCACAGATCAGCCCGGCGGAAGGCTGATCGAAAAGTGCATCAAGCATG 286
BSNT_03752___ 287 ATATTGCTGTTTATGCAGCTCATACAAATTTAGACGTTGCGGACGGCGGC 336
||||.||.||||||||.||||||||.|||.|.||.||.||.||||||||.
BL03697___yqf 287 ATATCGCGGTTTATGCGGCTCATACGAATCTCGATGTCGCTGACGGCGGT 336
BSNT_03752___ 337 GTGAATGATTTGCTTGCTGAAGC------ATTAGAGCTGAGTGAGACGGA 380
||.||.||..||||.||.||||| ||||.|| .|.||..|
BL03697___yqf 337 GTCAACGACATGCTAGCGGAAGCGCTGGAATTAAAG------AACACAAA 380
BSNT_03752___ 381 AGTGCTGGCACCTACTTATACGGATCCTCTGAAAAAGCTGGCAGTTTACG 430
|||.||||..||.||.|||...||.||.||||||||.||.||.||.||.|
BL03697___yqf 381 AGTTCTGGTTCCAACCTATGAAGAGCCGCTGAAAAAACTTGCCGTCTATG 430
BSNT_03752___ 431 TGCCGAAGGAATATGAAGAGCAGGT---CAGAGC-CGCGGTTGGAAATGC 476
|.|||||.||.||||||||.||||| ||.||| | |||||.|.||
BL03697___yqf 431 TCCCGAAAGATTATGAAGAACAGGTACGCACAGCTC----TTGGAGACGC 476
BSNT_03752___ 477 GGGGGCCGGCCATATCGGTGAATACAGCCATTGCGCGTTTTCATCTGAAG 526
.||.||||||||||||||.|..||||||||.||.||||||||..|.||||
BL03697___yqf 477 TGGAGCCGGCCATATCGGCGCCTACAGCCACTGTGCGTTTTCTGCAGAAG 526
BSNT_03752___ 527 GAATCGGCAGCTTTAAGCC---ATTGGACGGAGCTAAGCCTTTTATCGGT 573
||.||||||||||.||||| ||..|| ||||.|.||.||||||||
BL03697___yqf 527 GAGTCGGCAGCTTCAAGCCGCTATCTGA---AGCTGATCCGTTTATCGG- 572
BSNT_03752___ 574 GAAG-TGGGAGAGCTTGAGCTTGTTCATGAAGTAAGACTTGAGACTGTAT 622
.||| .|||.||||||||.|..||..|.||.||||||.|.|||||.||.|
BL03697___yqf 573 CAAGCGGGGCGAGCTTGAACGGGTCGAAGAGGTAAGAATCGAGACCGTTT 622
BSNT_03752___ 623 TTCCTAAAAGC----ATCGAAAAAGCTGTTATCAACGCAATGATAAAAAG 668
.||| .|| ||.||||||.|.||.|||||.||.||||...|...
BL03697___yqf 623 ATCC----GGCGGGTATTGAAAAATCCGTGATCAAAGCGATGAGTGAGGC 668
BSNT_03752___ 669 CCATCCATATGAAGAAGTCGCTTACGATATCTATCCTGTCGAACAGACTC 718
||||||.|||||||||||.||.|..|||||.|||||.|||||.||||.|
BL03697___yqf 669 CCATCCGTATGAAGAAGTGGCCTTTGATATTTATCCGGTCGAGCAGAAT- 717
BSNT_03752___ 719 CCGC--CGAAAAAGGGCTCGGCCGTGTCG--GAACCCTTAAAACT---GA 761
|||| | ||||||||||.|||||..||| ||| ||.|| | ||
BL03697___yqf 718 CCGCTTC-AAAAAGGGCTGGGCCGCATCGGTGAA---TTGAA--TGAAGA 761
BSNT_03752___ 762 GATGACGCTCAAGGAATTCGCTTTATTTGTGAAAGACAAGCTTGACGTCA 811
||||||.|||.|.|..||.||...||.||||||.||.|||.|.||.|..|
BL03697___yqf 762 GATGACACTCGAAGCGTTTGCCCGATATGTGAAGGAAAAGTTGGAGGCGA 811
BSNT_03752___ 812 ATGGTGTCAGAATGGTGGG------GGATGCTGACAGCATGGTGAAAAAG 855
|.||.|...|.|||||||| .||||| ||.| |||||.|||
BL03697___yqf 812 ACGGAGCGCGGATGGTGGGCAAGTCTGATGC-GAAA-----GTGAAGAAG 855
BSNT_03752___ 856 GTAGCTGTTCTTGGCGGAGATGGAAACAAGTATATTCATCATGCAAAACG 905
||.||.||..|.|||||.||.||.|||||.||.||.||||||||||||||
BL03697___yqf 856 GTCGCCGTATTAGGCGGTGACGGCAACAAATACATCCATCATGCAAAACG 905
BSNT_03752___ 906 AAAGGGAGCCGATGTTTACGTCACAGGAGATTTATACTTCCATGTGGCCC 955
.|.|||.||.|||||.||.|||||.|||||..|.||.||||||..|||.|
BL03697___yqf 906 TATGGGCGCTGATGTATATGTCACGGGAGACCTGTATTTCCATACGGCGC 955
BSNT_03752___ 956 ATGATGCGATGATGCTTGGCCTAAATGTGGTTGATCCGGGCCATTACGCA 1005
|.||.||.||||||.|.||.||.|||||.|||||.||.||||||||.||.
BL03697___yqf 956 ACGACGCCATGATGATCGGGCTGAATGTAGTTGACCCCGGCCATTATGCT 1005
BSNT_03752___ 1006 GAAAAAATCATGAAAGAAGGCGTCACGAGAAAACTGACATCAATGTGTAA 1055
|||.|||||||||||.|.||.||..|.|.|||.||||||.|.|||||...
BL03697___yqf 1006 GAACAAATCATGAAAAACGGGGTTGCAAAAAAGCTGACAGCGATGTGCCG 1055
BSNT_03752___ 1056 CGATAAAAAGTTTGACGT----GAATATCTTTGTTTCTGAAACAGATACA 1101
.||.|||||.|||||.|| | |||||...||.||.||..||||.
BL03697___yqf 1056 GGAGAAAAAATTTGATGTCTCGG----TCTTTCCATCGGATACGAATACG 1101
BSNT_03752___ 1102 AATCCATTTACATTTCTATAA 1122
|||||.|||||.|||.|||||
BL03697___yqf 1102 AATCCGTTTACGTTTGTATAA 1122
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