Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05524 and BL03684

See Amino acid alignment / Visit BSNT_05524 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:39
# Commandline: needle
#    -asequence dna-align/BSNT_05524___ywqH.1.5803.seq
#    -bsequence dna-align/BL03684.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05524___ywqH-BL03684.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05524___ywqH-BL03684.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05524___ywqH
# 2: BL03684
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 502
# Identity:     261/502 (52.0%)
# Similarity:   261/502 (52.0%)
# Gaps:         146/502 (29.1%)
# Score: 535.5
# 
#
#=======================================

BSNT_05524___      1 ATGGGTTATGAAAGT-ATGCTAGC--------GGATATCAAAAGTTCGCT     41
                            |||  ||| ||||.|||        ..|||||.|.||..||.|
BL03684            1 -------ATG--AGTCATGCGAGCACATTGAATCATATCCACAGCACGAT     41

BSNT_05524___     42 CAACGGAAAAATTTCCGACGT-GGAAGACAAGATCGAA-AAGCTGAAAAA     89
                     .|||..|||..|..||||.|| |.|||.| .|||.||| .|| |.||||.
BL03684           42 TAACCAAAAGCTGGCCGATGTAGAAAGGC-GGATTGAACGAG-TTAAAAC     89

BSNT_05524___     90 AGCAAAAAAGGACATAGACACACTGCAAGAAGAGGCAATC---ACT---G    133
                     |||||||||||..||.||      |.|||||.|.|.||.|   |.|   |
BL03684           90 AGCAAAAAAGGGGATTGA------GAAAGAACACGAAACCGGGATTGTCG    133

BSNT_05524___    134 AAATCAAAGAAATTGTGAAACCGGAATTGGGCAAGCATTGGAC-GGGAAC    182
                     |.||||...||||..||.|.||..|..||..||..||.||||| |||.||
BL03684          134 AGATCAGGCAAATCTTGCACCCTCATCTGAACAGCCACTGGACAGGGGAC    183

BSNT_05524___    183 AAAAGCCGATGATTTCGACAAGG-GAA-GAGAAGAGGCGAAATCGGAAGC    230
                      ...|||.|.|||||.|  |.|| ||| |.||.|||||    ||  |..|
BL03684          184 -TTCGCCAACGATTTTG--ATGGCGAACGGGATGAGGC----TC--ATAC    224

BSNT_05524___    231 ATC------CAAGATTGTGAATGATAAATATAACGAGTATATGGCTTCGA    274
                     |||      |||.||.|||||.|..||.||..|.|..|||||        
BL03684          225 ATCTATGTACAACATCGTGAACGGAAAGTACGAAGGCTATAT--------    266

BSNT_05524___    275 TTCAAAGCAAAATATTCTGGCTTGAGACAGAGAAA----TTTGAGCT-GA    319
                     |||..||         ||||        |||||||    ||||.||| ||
BL03684          267 TTCCCAG---------CTGG--------AGAGAAAAATTTTTGCGCTCGA    299

BSNT_05524___    320 ATTTGACAAAAAGTGCAGC---GAAT--------GCCGCAGGCGACCTTC    358
                     |.|||   |||||..||||   ||||        ||.|||          
BL03684          300 AGTTG---AAAAGCACAGCCTTGAATTGGCGGGAGCGGCA----------    336

BSNT_05524___    359 TTGCTAAAGGAGAAGA--------TTTC----GTAGAAGAAGCAGGAAGA    396
                       |||||||..|..||        ||||    |..|||.|||| ||..||
BL03684          337 --GCTAAAGAGGCGGATCATTTGCTTTCTCTGGGGGAAAAAGC-GGTTGA    383

BSNT_05524___    397 -CAAATTAG---TAAA-----------CTAAAA----TGGTGGTGA----    423
                      ||..|.||   ||||           |.||||    |||.|.||.    
BL03684          384 TCAGTTGAGCGATAAAATCCGCTCAATCAAAAACAGTTGGAGCTGGTTTT    433

BSNT_05524___    423 --    423
                       
BL03684          434 AA    435


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