Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03763 and BL03679

See Amino acid alignment / Visit BSNT_03763 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:48
# Commandline: needle
#    -asequence dna-align/BSNT_03763___yqfL.1.5803.seq
#    -bsequence dna-align/BL03679___yqfL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03763___yqfL-BL03679___yqfL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03763___yqfL-BL03679___yqfL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03763___yqfL
# 2: BL03679___yqfL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     624/814 (76.7%)
# Similarity:   624/814 (76.7%)
# Gaps:           2/814 ( 0.2%)
# Score: 2348.0
# 
#
#=======================================

BSNT_03763___      1 ATGAATAACCGCATCATCTATGTTGTATCGGATTCCGTCGGTGAAACGGC     50
                     ||||.|||.||.|..||.|||||||||||.||.||.|||||.||.||.||
BL03679___yqf      1 ATGAGTAATCGGACGATTTATGTTGTATCAGACTCTGTCGGCGAGACCGC     50

BSNT_03763___     51 TGAATTGGTAGTAAAAGCAGCACTCAGCCAATTTAACGGATCGGCGGATG    100
                     |||..|.|||||.|||||.||..|||||||.||||||||.||..|.||..
BL03679___yqf     51 TGAGCTCGTAGTCAAAGCGGCTATCAGCCAGTTTAACGGTTCATCCGAGC    100

BSNT_03763___    101 ATACTCATGTAAGAAGAATTCCTTATGTTGAAGATATAGGCACTATCAAT    150
                     |.||..||.|.||..|.|||||||||||.|||||....||.||.||.||.
BL03679___yqf    101 AGACAAATATCAGGCGGATTCCTTATGTCGAAGACCGCGGAACAATAAAA    150

BSNT_03763___    151 GAAGTGATTTCACTTGCAAAGGCAGACGGCGGCATTATCTGTTTTACACT    200
                     ||||||||.||.||.|||.|.||.|||||||||||.|||||||||||.||
BL03679___yqf    151 GAAGTGATCTCGCTGGCAGAAGCGGACGGCGGCATCATCTGTTTTACGCT    200

BSNT_03763___    201 CGTGGTGCCGGAAATCAGAGAATATTTGATAGCCGAAGCGGAAAAAGCAA    250
                     .||.||.|||||.||..|.||||.|||.||.||||||||.|||||.||.|
BL03679___yqf    201 TGTTGTCCCGGAGATTCGTGAATTTTTAATCGCCGAAGCCGAAAAGGCGA    250

BSNT_03763___    251 ATGTTTTATATTATGATATTATCGGCCCGTTGATTGATAAAATGGAAACA    300
                     ||||..|.|||||.|||||.|||||||||.|||||||.||||||||..|.
BL03679___yqf    251 ATGTCGTGTATTACGATATCATCGGCCCGCTGATTGAGAAAATGGAGTCG    300

BSNT_03763___    301 GCCTACGGTTTAACAGCGAAATATGAACCGGGGCGGGTGCGCCAGCTTGA    350
                     |.||||||.||.|..|||||||||||.|||||..|.||.||.|||||.||
BL03679___yqf    301 GTCTACGGCTTCAGTGCGAAATATGAGCCGGGCAGAGTCCGACAGCTGGA    350

BSNT_03763___    351 TGAAGATTATTTCAAAAAAGTGGAGGCCATCGAGTTTGCAGTTAAATACG    400
                     .|||||||||||.||.||.||.|||||||||||.|||||.||||||||.|
BL03679___yqf    351 CGAAGATTATTTTAAGAAGGTAGAGGCCATCGAATTTGCGGTTAAATATG    400

BSNT_03763___    401 ATGATGGACGTGATCCAAGAGGGATTTTAAAAGCTGATATCGTTTTGATC    450
                     |.||.||..|.||||||||.||.||.||||||||.||||||||..|||||
BL03679___yqf    401 ACGACGGCAGAGATCCAAGGGGCATCTTAAAAGCGGATATCGTGCTGATC    450

BSNT_03763___    451 GGCGTGTCAAGAACGTCTAAAACACCGCTGTCTCAATATCTCGCACACAA    500
                     ||||||||.||||||||.|||||.|||.|.||.|||||..|.||.||.||
BL03679___yqf    451 GGCGTGTCGAGAACGTCCAAAACTCCGTTATCCCAATACTTGGCGCATAA    500

BSNT_03763___    501 ACGCCTGAAGGTTGCCAATGTTCCGATTGTACCGGAGGTTGATCCGCCGG    550
                     |||..|.||.||.||.||.||||||||.||.||.|||||.||.||.||.|
BL03679___yqf    501 ACGGTTAAAAGTGGCAAACGTTCCGATCGTTCCCGAGGTGGACCCTCCCG    550

BSNT_03763___    551 AAGAACTCTTTAACGTTGATCCGAAAAAATGCATCGGTTTAAAGATTAGC    600
                     ||||.|||||||.||||||||||...|||||||||||.|||||.||.|||
BL03679___yqf    551 AAGAGCTCTTTACCGTTGATCCGGCTAAATGCATCGGGTTAAAAATCAGC    600

BSNT_03763___    601 CCTGATAAACTGAATCATATCAGAAAAGAACGCTTAAAATCACTCGGGCT    650
                     ||.|||||||||||.||||||.|.||.||.|||.|.|||||.|||||.||
BL03679___yqf    601 CCGGATAAACTGAACCATATCCGCAAGGAGCGCCTGAAATCGCTCGGCCT    650

BSNT_03763___    651 TAATGATAAAGCGATTTATGCAAATATCAACAGAATCAAAGAGGAACTCG    700
                     .||.||.|||||.|||||.||.|||||||||.|.||||||||.||.||.|
BL03679___yqf    651 CAACGACAAAGCCATTTACGCTAATATCAACCGCATCAAAGAAGAGCTTG    700

BSNT_03763___    701 AGTATTTCGAAAAGATTGTGGATCGGATCGGCTGCCAAGTTGTTGATGTT    750
                     |.|..||.||||||||.||.|..||.||.||||||.|.||.||.||.||.
BL03679___yqf    701 AATTCTTTGAAAAGATCGTCGGCCGCATTGGCTGCAATGTCGTAGACGTA    750

BSNT_03763___    751 TCAAATAAAGCGGTTGAGGAAACAGCAAATATTATCCATCATC-TCAAAA    799
                     ||||||||||||||.||||||||.||.||.|||||.|| ||.| |.|..|
BL03679___yqf    751 TCAAATAAAGCGGTGGAGGAAACGGCCAACATTATTCA-CAACATGATGA    799

BSNT_03763___    800 CAAAAAACATATAA    813
                     ||||||...|.|||
BL03679___yqf    800 CAAAAAGGGTCTAA    813


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