Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03769 and BL03675

See Amino acid alignment / Visit BSNT_03769 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:48
# Commandline: needle
#    -asequence dna-align/BSNT_03769___recO.1.5803.seq
#    -bsequence dna-align/BL03675___recO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03769___recO-BL03675___recO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03769___recO-BL03675___recO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03769___recO
# 2: BL03675___recO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 800
# Identity:     575/800 (71.9%)
# Similarity:   575/800 (71.9%)
# Gaps:          61/800 ( 7.6%)
# Score: 2036.5
# 
#
#=======================================

BSNT_03769___      1 ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGA     50
                     ||||||||.|||||||||||.|||||.|||||.|||||.||.||.||.||
BL03675___rec      1 ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGA     50

BSNT_03769___     51 GACGAATAAAATCGTAACTTTACTGACAAGAGAACACGGAAAAATAGGTG    100
                     .||.|||||.|||.|.||..||.||||.|||||||||||.|||||.||||
BL03675___rec     51 AACAAATAAGATCATTACGCTATTGACGAGAGAACACGGGAAAATCGGTG    100

BSNT_03769___    101 TTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGC    150
                     |..|||||.|.|||||||||||.|||||||||||.||.|||||..|...|
BL03675___rec    101 TGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCC    150

BSNT_03769___    151 CAGCCCTTTTTGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGG    200
                     |||||.||..|.||||..|||||.|||.|.|..|||.||||.||||||||
BL03675___rec    151 CAGCCGTTCCTTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGG    200

BSNT_03769___    201 AACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGCATCAGGGAAG    250
                     .||..|..|||||||.||.||||||...||||||||....|||.|.||.|
BL03675___rec    201 CACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAATATCCGCGAGG    250

BSNT_03769___    251 ACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGA    300
                     |..|||||||||||||.||.||.|||||.||.|||||.|||.||||||..
BL03675___rec    251 ATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAG    300

BSNT_03769___    301 GGCACAGAAGAAAAAAAGCCAAATCCTTATTTATTTGA-----------A    339
                     ||.||.||.|||||.||.||.|||||.|.|||||||||           |
BL03675___rec    301 GGAACGGAGGAAAAGAAACCGAATCCGTTTTTATTTGAGCTGCTGCTTCA    350

BSNT_03769___    340 TTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGT    389
                     .||| ||.||.|          .|||||||||.||.||||||||.||..|
BL03675___rec    351 GTCA-ATGAGGA----------GGCTGAATGACGGTACAGATCCCGACAT    389

BSNT_03769___    390 TATC----ACCTTCATTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTG    435
                     ||||    ||| ||||.|   ||.|.||.||||||.|.||.|||||.|||
BL03675___rec    390 TATCGCCAACC-TCATCG---AAGTCAAAATGCTCAGCGTGATGGGGCTG    435

BSNT_03769___    436 TATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGAACCTT    485
                     |||||.||||||.||.|.|||||.||.||.||.|||.|||||||.||.||
BL03675___rec    436 TATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGCACATT    485

BSNT_03769___    486 TCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAA    535
                     ||||||.||..|.||.||.||.||.|||||.||||||||||||||||..|
BL03675___rec    486 TCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGA    535

BSNT_03769___    536 AAGATCCTTACAGGATACCG----CTCAAACCGCAAACGGCAAGGCTGTT    581
                     |||||||.||||||||||||    |||   |||| |.|.||.||||||||
BL03675___rec    536 AAGATCCATACAGGATACCGCTGTCTC---CCGC-ATCCGCCAGGCTGTT    581

BSNT_03769___    582 AAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAA    631
                     .|||||.||||..||||||||.|||||.||||||||.|||||.||..|.|
BL03675___rec    582 GAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCA    631

BSNT_03769___    632 AAGAGGAAACAAA-----AGCTGAATTAAAGCAAGTGATTGATTTA----    672
                     ||.||||.||.||     |||||||       |||.|  |.|||.|    
BL03675___rec    632 AACAGGAGACGAAGGATGAGCTGAA-------AAGGG--TTATTCAGACG    672

BSNT_03769___    673 TATTACGAAGAATATTC-GGGATTGTATTTAAAATCAAAGCGCTTTTTAG    721
                     ||.||.||.||.||.|| |||| |.||..|.|||||...||||||..|.|
BL03675___rec    673 TACTATGACGAGTACTCAGGGA-TCTACCTGAAATCGCGGCGCTTCATGG    721

BSNT_03769___    722 ATCAAATGGAAAGCATGAAACATCTTATGGG---TGAAAACAAAAGTTGA    768
                     |.||||||||.|..||||||.|..|..||||   ||||||||||||||||
BL03675___rec    722 AACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03769 and BL03675

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
