Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03774 and BL03672

See Amino acid alignment / Visit BSNT_03774 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:48
# Commandline: needle
#    -asequence dna-align/BSNT_03774___dgkA.1.5803.seq
#    -bsequence dna-align/BL03672___dgkA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03774___dgkA-BL03672___dgkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03774___dgkA-BL03672___dgkA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03774___dgkA
# 2: BL03672___dgkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 420
# Identity:     263/420 (62.6%)
# Similarity:   263/420 (62.6%)
# Gaps:          87/420 (20.7%)
# Score: 726.0
# 
#
#=======================================

BSNT_03774___      1 ATGGACTCAAAAGA---TCATAGA-------AATGAG------CTG--AA     32
                     ||||.|||..||||   |||||.|       |||| |      |||  ||
BL03672___dgk      1 ATGGGCTCTCAAGATCCTCATAAACAAAACGAATG-GCGCCGTCTGAAAA     49

BSNT_03774___     33 TCGA-TTCTTCAAAAG-CTTCGTGCATGCAGGCCGGGGCATCTGGGAAA-     79
                     | || ||.||||||.| |||      |.||||               || 
BL03672___dgk     50 T-GAGTTTTTCAAACGCCTT------TACAGG---------------AAT     77

BSNT_03774___     80 ---CAGTGCGGACG---------GAGCGGAATTTCCAATTTCA-TGCCGC    116
                        ||    .||||         |||||.|||||...|.|||| || ||.
BL03672___dgk     78 TATCA----AGACGTTCATATCAGAGCGCAATTTTAGAATTCACTG-CGG    122

BSNT_03774___    117 AGCCGCC-TGCGC-TGTTCTCATTTGCGGC--TTCCTTGTAGAGCTCA-G    161
                     ||||||| |.|.| ||.||.|  .||||||  ||.||| .|| |||.| |
BL03672___dgk    123 AGCCGCCATCCTCGTGATCGC--CTGCGGCTTTTTCTT-CAG-GCTGACG    168

BSNT_03774___    162 CATGATTGAGTGGATGATTATATTCCTTTTGATAGGCGGTATGTTTTCGC    211
                     | ||||.||.||||...|.||.||..|..||||.|||||.|||  .||||
BL03672___dgk    169 C-TGATCGAATGGACCGTCATCTTGATCCTGATCGGCGGAATG--CTCGC    215

BSNT_03774___    212 --TTGAGCTTTTAAATACAGCCATTGAACATACGGTGGA---TTTAATAA    256
                       |.|||||..|.|||||.||..||||.||||||||.||   .||.|.||
BL03672___dgk    216 CTTGGAGCTGATGAATACGGCTGTTGAGCATACGGTCGACCTCTTCACAA    265

BSNT_03774___    257 CTGACAAACATCACCCTCTTGCTAAAGCGGCCAAGGACGCTGCCGCCGGG    306
                     ..||.|   |.|||||.|||||.|||||.||.||||||||.||.||||||
BL03672___dgk    266 AAGAGA---ACCACCCGCTTGCAAAAGCTGCAAAGGACGCGGCAGCCGGG    312

BSNT_03774___    307 GCTGTTTGCGTTTTTGCCGTGATTTCGTGTATCATTGGTTTACTTATTTT    356
                     ||.||||||||.|||||.|...||||||||||.|||||.||||||||.||
BL03672___dgk    313 GCGGTTTGCGTGTTTGCAGCCGTTTCGTGTATGATTGGGTTACTTATCTT    362

BSNT_03774___    357 TTTGCCAAAGCTGT----AA    372
                     ||||.||||..|||    | 
BL03672___dgk    363 TTTGTCAAAATTGTTTTGA-    381


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