Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03776 and BL03670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_03776___yqfF.1.5803.seq
# -bsequence dna-align/BL03670.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03776___yqfF-BL03670.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03776___yqfF-BL03670.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03776___yqfF
# 2: BL03670
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2244
# Identity: 1560/2244 (69.5%)
# Similarity: 1560/2244 (69.5%)
# Gaps: 201/2244 ( 9.0%)
# Score: 5145.0
#
#
#=======================================
BSNT_03776___ 1 GTGTTGAAAAAGAAGGCTAAGACCAAAA----GCAGCTCAAAAAAAT--- 43
||||||||||| |||| ||.| |||.|
BL03670 1 ---TTGAAAAAGAA----------AAAAAGAGGCGG------AAAGTTTC 31
BSNT_03776___ 44 GG---AGCAGTTTTAAAAA-----------TGCCCGCTCCATGC---ATG 76
|| |.|.|.||.||.|| |.|||| .|||.| |||
BL03670 32 GGCTTATCCGCTTGAATAACGGGGGCTTCCTTCCCG--TCATTCTTTATG 79
BSNT_03776___ 77 TACTGCTGTATCTTCTGCTGGCTACCATTATGTTTGCTT--TGCTCTTTA 124
|.|||.||||..| |||| ||||| |.| ||||.|||.
BL03670 80 --CGGCTTTATCCGC-GCTG---------ATGTT--CATCCTGCTGTTTT 115
BSNT_03776___ 125 TACATGTTAAGCCGGA-------AACACTTGATTTAGACCTGTTTTCAGT 167
|.|||||.|.|||||| .|| ||.|||||| |||||..|
BL03670 116 TCCATGTGAGGCCGGAGTCCCTCGAC-CTCGATTTA------TTTTCGAT 158
BSNT_03776___ 168 TAGCGACAAGACCATTTACGCTCCGGCAACCGTAGAAGATCAAAAAGCCA 217
.|||||.||.||.||.||.||.|||||.||.||.|||||.|||||.||.|
BL03670 159 CAGCGAGAATACGATCTATGCGCCGGCGACAGTTGAAGACCAAAAGGCAA 208
BSNT_03776___ 218 CAGAGGAAAAAAAGCAAGCCGCTGAG-GACGCGGTTGAAGATCAATATAC 266
|.|...|.||||||||.|..|| ||| ||.|..|||...||.||.||.||
BL03670 209 CGGCTAATAAAAAGCAGGAAGC-GAGAGAGGAAGTTCCCGACCAGTACAC 257
BSNT_03776___ 267 ATTAAAAAAAGAATATACAGACAATCGGATTGACCTTGTGTCATCAATAT 316
.||.||||||||.||..|.|||||..||.|.||||||||.|||||.||.|
BL03670 258 TTTGAAAAAAGAGTACTCTGACAACAGGGTCGACCTTGTCTCATCGATTT 307
BSNT_03776___ 317 TCGACAGTATTAGTGAAGTGAAAAAATCA---TCAGAAGAAGGCAGTAAA 363
||||||..||||..||||||||||||..| .|||||.||| ||.|||
BL03670 308 TCGACATCATTAAAGAAGTGAAAAAAGAAAGCGCAGAAAAAG--AGAAAA 355
BSNT_03776___ 364 -----------TCACCATCGGAAAA--ATCAATGGTCAAATCTGTAAAGG 400
.|.|||||.||||| |.|| |.||||||||||..|.|
BL03670 356 AAGACAAGCAGGCCCCATCTGAAAAAGACCA--GATCAAATCTGTTGAAG 403
BSNT_03776___ 401 ACAAATTGACATCAGATGTGAATGATTCTATATCGGAGGATTCCATCAAG 450
|.||..||||.||.|||||||..||.||..|.||..|||||||..||||
BL03670 404 AAAAGCTGACTTCCGATGTGACGGACTCGCTGTCACAGGATTCAGTCAA- 452
BSNT_03776___ 451 ACA-TTGCTGAAAGCAGACAGTGA---AGA-CTTTTCTTTTGTCAGAGAT 495
||| .||||||..|| |||.|| ||| ||||.|.|....||| |||
BL03670 453 ACACCTGCTGAGGGC---CAGCGACGGAGAGCTTTCCATGACGCAG-GAT 498
BSNT_03776___ 496 ACGGTCATTACCGCGGTAAAT-ACGGTCATGAGCAGTGAAATCCCCTC-G 543
.|||||||.|||||.||.||| || ||.|||||||..|||||||.|.| |
BL03670 499 TCGGTCATCACCGCCGTCAATGAC-GTGATGAGCAAAGAAATCCGCGCAG 547
BSNT_03776___ 544 GATAAACTATCTGATGCAAAGGATAAGGTAGAAAAAGAGCTAAAGAGCAA 593
|| ||.||...|||.||.||.||..|.|||...|||||.||.|||.||||
BL03670 548 GA-AAGCTCGATGAAGCGAAAGAACATGTAACGAAAGAACTGAAGGGCAA 596
BSNT_03776___ 594 TTCTATTCCGTCTAAAT------ACTTGGGAGCCGC-GACAGAAATCGGG 636
|||.||.||.||.|||| || ||||| || .||||||||.
BL03670 597 TTCGATACCTTCAAAATTAAAAAAC------GCCGCTGA-TGAAATCGGA 639
BSNT_03776___ 637 CGTTTTGCTATTATTCCGAATTACGTCTTCGATCC-GA-AAGCAACAGAG 684
||.|||||.||.|||||.||||||||.|.|||||| || ||| ||.||
BL03670 640 CGCTTTGCGATCATTCCCAATTACGTATACGATCCTGACAAG--ACGGA- 686
BSNT_03776___ 685 GCA-AAACGGCAGGAAGCCTCAGATAATGTCCAGCAGGTTCAAATCAAAC 733
||| ||.||.||.|||||..|.||.|..||.||||||||.||.|||||.|
BL03670 687 GCAGAAGCGTCAAGAAGCGGCTGACAGCGTACAGCAGGTACAGATCAAGC 736
BSNT_03776___ 734 AGGGACAAGTGCTCGTGGAAGAAAATGACCTCATTGATCGGGAAGTGTAC 783
||||.||..|.|||||.||.||||||.|.||.||.||..|||||||.||.
BL03670 737 AGGGGCAGATACTCGTTGAGGAAAATCAGCTGATCGACAGGGAAGTCTAT 786
BSNT_03776___ 784 AGAAAACTTGAGCTGACCGGGTTATTAA----ATAACTCAAATCTCTTTA 829
.||||.||.||..||||.|||.|.||.| | .|.||..||||.|
BL03670 787 CGAAAGCTCGAATTGACAGGGCTCTTGAGCGGA----GCCAACATCTTCA 832
BSNT_03776___ 830 AACCGATCAGCGGGCTATTGATTATGATCGGACTTTTCATTGCAACACTT 879
||||..||.||||.||..||.||.|.||||..||||||||..||.|..|.
BL03670 833 AACCTGTCGGCGGACTGCTGCTTTTAATCGCGCTTTTCATCTCAGCTTTG 882
BSNT_03776___ 880 GTATATTATTTTGAAAAACAGAAACAAAATCTGAAGTTT---AAAAACCA 926
||.||.|||||.|||||.|| |.|||..|.|.| |.|| ||||||.|
BL03670 883 GTTTACTATTTCGAAAAGCA-ATACAGCAGCCG--GATTCCGAAAAACAA 929
BSNT_03776___ 927 ATC---CATTCTGTTATTC-TCCATAATCACA---ACACTTTTGCTTGTG 969
.|| |||.||||| ||| | |.|||||| |...||||..|.|
BL03670 930 GTCGCTCATGCTGTT-TTCGT---TGATCACAGGGATCGTTTTAATCG-- 973
BSNT_03776___ 970 ATCATGGAGGTTGTCAGTTTGTTTCAGAAGATGGAGTATAAT----AATA 1015
|||||||.||..||||..||||||||.||.|.|| ||| .|||
BL03670 974 -TCATGGAAGTGATCAGCCTGTTTCAGCAGCTTGA----AATCGGCCATA 1018
BSNT_03776___ 1016 TCGGCTATCTGGTCCCCATTGCGGCCGGCGCCATCTTAATCAAACTGCTG 1065
||||||||||.||.||.||||||...||||..||..|.||.|||||||||
BL03670 1019 TCGGCTATCTCGTGCCGATTGCGATGGGCGTGATGCTCATTAAACTGCTG 1068
BSNT_03776___ 1066 ATGAATGAACGCATTGCCATTTTGGGAAGTATCATTCTTGCGATTTGCGG 1115
||.||||||.|..|.||.||..||...||.||.||||||.|.||||||||
BL03670 1069 ATCAATGAAAGGCTGGCGATCCTGTCGAGCATGATTCTTTCCATTTGCGG 1118
BSNT_03776___ 1116 AAGTATGATGTTTAATCAGGGTGTGACAGGAACATTCAATTATGTCATAG 1165
|||.|||||||||||.||||||||||||||.||.|||||.||||..||.|
BL03670 1119 AAGCATGATGTTTAACCAGGGTGTGACAGGCACGTTCAACTATGGAATCG 1168
BSNT_03776___ 1166 GGATTTATTATTTGATCAGCGGCATTTCAGGTGTATTATTTTTAGGAAAA 1215
|.|..||||..||.||||||...||..|.|||.||.|.||||||||.||.
BL03670 1169 GAACGTATTTCTTAATCAGCTCGATGGCGGGTATACTGTTTTTAGGGAAG 1218
BSNT_03776___ 1216 CACAATGCAAGATCAAAGATTTTGCAGACCGGACTTTTCGTGGCGTTTAT 1265
||.||.||.||..|.||.|||.|.|||.||||..|.||.||..|..|.||
BL03670 1219 CATAACGCGAGGGCGAAAATTCTCCAGGCCGGTTTATTTGTCTCTCTGAT 1268
BSNT_03776___ 1266 TAATATGGTTGTCGTTCTATCCTTATTA--------TTGATCCAGAACAC 1307
.||.||.||| |||||.| ||| .||||.||.|||||
BL03670 1269 CAACATCGTT---GTTCTGT-----TTACCCTGCAGCTGATTCAAAACAC 1310
BSNT_03776___ 1308 TGCGCTGTCGGGTCTTGAAATCGGCACGT-TAATGCTCATGGGGGTTGTG 1356
.||||...|.||.|||||.||.||.||.| |..|| |||||||||..|||
BL03670 1311 GGCGCAAACCGGGCTTGAGATGGGTACATATCTTG-TCATGGGGGCGGTG 1359
BSNT_03776___ 1357 TCGGGGTTTGCTTCATCTG-TATTGATCATCGGCCTGATGCCGTTTTTTG 1405
||.||..|.|..||.||.| |.|||.|| ||||.||.|||||||||||||
BL03670 1360 TCCGGCATCGGATCGTCAGTTCTTGTTC-TCGGACTCATGCCGTTTTTTG 1408
BSNT_03776___ 1406 AGACGGGCTTTGGCATTTTATCCACCATGAGGCTGCTCGAGCTGTCTAAT 1455
|.|..||.||||||||..|.|||||.||||.|||.||||||||.||.|||
BL03670 1409 AAAGCGGATTTGGCATCCTGTCCACGATGAAGCTTCTCGAGCTTTCAAAT 1458
BSNT_03776___ 1456 CCTAACCATCCGCTATTGCGCAAAATACTGACAGAAACACCAGGTACATA 1505
||.||.||||||||..|.||||||||.|||||.||||||||.||.|||||
BL03670 1459 CCGAATCATCCGCTGCTCCGCAAAATTCTGACGGAAACACCGGGCACATA 1508
BSNT_03776___ 1506 TCATCACAGTGTAATGGTTGCCAATTTATCAGAGGCAGCCTGTGAAGCGG 1555
.||||||||.||.|||||.||.||.|||||.|||||.||.||.|||||||
BL03670 1509 CCATCACAGCGTTATGGTCGCGAACTTATCTGAGGCGGCATGCGAAGCGG 1558
BSNT_03776___ 1556 TTGGGGCTAATGGTTTGCTTGCAAGAGTCGGCGCATATTATCACGATCTC 1605
|.||.||.||.||..||||.|||||.||||||||.|||||.||.|||.||
BL03670 1559 TCGGAGCAAACGGGCTGCTGGCAAGGGTCGGCGCCTATTACCATGATATC 1608
BSNT_03776___ 1606 GGAAAAACAAAGCGCCCGCAATATTTTATTGAAAACCAAATGAATATTGA 1655
||.||.||||||||.||.|||||||||||.||||||||||||||||||||
BL03670 1609 GGCAAGACAAAGCGGCCCCAATATTTTATAGAAAACCAAATGAATATTGA 1658
BSNT_03776___ 1656 CAATCCGCATGACAAGCTGTCACCTCAGTTGAGTAAAAATATTATTATCT 1705
.||.||||||||||||||.||.||.|||.||||.|||||.|||||.||..
BL03670 1659 TAACCCGCATGACAAGCTTTCTCCGCAGCTGAGCAAAAACATTATCATTG 1708
BSNT_03776___ 1706 CGCATACGACAGACGGTGCGAATATGCTGAGAAGCT-ATAAATTTCCGAA 1754
|.|||..|||.|||||.||..|||||||||| .|.| |||||.|.|||||
BL03670 1709 CCCATGTGACGGACGGCGCCGATATGCTGAG-GGATCATAAAATGCCGAA 1757
BSNT_03776___ 1755 AGAGCTTGTCGATATTGCTGAGCAGCATCATGGAACCTCGCTTTTAAAGT 1804
.|||||||||||.||.||.||.||||||||.||.||.|||||..|.||||
BL03670 1758 GGAGCTTGTCGACATAGCCGAACAGCATCACGGCACATCGCTGCTCAAGT 1807
BSNT_03776___ 1805 TTTTTTACTATAAAGCGAAGGAAAAAGGCGACCAGATTACAGAGGAAGAG 1854
|||||||||||||.|||||.|||||||||||.||||..||.||.||||||
BL03670 1808 TTTTTTACTATAAGGCGAAAGAAAAAGGCGATCAGACGACTGAAGAAGAG 1857
BSNT_03776___ 1855 TTCCGTTATCCGGGGCCGAAGCCGCAGTCAAAGGAAGCCGCAATTATATC 1904
|||||.|||||.||.||||||||.|||.||||.||.||.||.||.||.||
BL03670 1858 TTCCGCTATCCCGGTCCGAAGCCCCAGACAAAAGAGGCGGCGATCATCTC 1907
BSNT_03776___ 1905 AGTGGCCGACAGTGTTGAAGCGGCCGTCAGATCCATGCACAATCCAAATC 1954
.|||||||||||.||.||||||||||||.|.||.|||||.||.||.||||
BL03670 1908 GGTGGCCGACAGCGTCGAAGCGGCCGTCCGCTCAATGCATAACCCTAATC 1957
BSNT_03776___ 1955 CTGAACGAATTGAAAAGCTTGTCCGGGGTATTATATCCGATAAGCTTCAG 2004
|.|||.|.|||||||||||.||.||.||.||.|||.|.||||||||.|||
BL03670 1958 CCGAAAGGATTGAAAAGCTGGTGCGCGGGATCATAGCGGATAAGCTGCAG 2007
BSNT_03776___ 2005 GACGGACAGTTCAGTGAATGCGATCTGACATTTAAAGAGCTGGATACAAT 2054
|||||.|||||....|||||.|||.||||.||.||||||||..||||.||
BL03670 2008 GACGGGCAGTTTGACGAATGTGATTTGACTTTAAAAGAGCTCAATACTAT 2057
BSNT_03776___ 2055 CGCAAAAACGCTCTGTGCAACATTAAAAGGAATTTTCCACTCCCGGATTG 2104
|||.||.||||||||.|.|||..|.|||||.|||||.||.||||||||.|
BL03670 2058 CGCGAAGACGCTCTGCGAAACGCTGAAAGGCATTTTTCATTCCCGGATAG 2107
BSNT_03776___ 2105 AATATCCGGAGGCTA---CTA---AGAAGGTGAAATAG------ 2136
||||||||||.|||| ||| |||||||||||.|.
BL03670 2108 AATATCCGGAAGCTAATCCTAAACAGAAGGTGAAACATACATGA 2151
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