Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02301 and BL03640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_02301.1.5803.seq
# -bsequence dna-align/BL03640___clpE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02301-BL03640___clpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02301-BL03640___clpE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02301
# 2: BL03640___clpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2147
# Identity: 1374/2147 (64.0%)
# Similarity: 1374/2147 (64.0%)
# Gaps: 403/2147 (18.8%)
# Score: 5015.5
#
#
#=======================================
BSNT_02301 0 -------------------------------------------------- 0
BL03640___clp 1 ATGCGTTGTCAACATTGTCAAAAAAATGAGGCGACGATTCGCCTAAACAT 50
BSNT_02301 0 -------------------------------------------------- 0
BL03640___clp 51 GCAAATCAACTTTACAAAAAAACAAATGGATTTATGTGAAGACTGCTATA 100
BSNT_02301 0 -------------------------------------------------- 0
BL03640___clp 101 AAGAGCTGACTCAGCCTTCTATGTTTTCAGGAAATCACTTTTTTGGCGGC 150
BSNT_02301 0 -------------------------------------------------- 0
BL03640___clp 151 GGAGGTTCTTTCTTCAGCCAGCCATCACAAGCGCAGACGCAAACCGCTGC 200
BSNT_02301 0 -------------------------------------------------- 0
BL03640___clp 201 CAAAAAAGGCTTGCTCGATGAACTTGCCGTCAATTTAACAAATGCAGCAA 250
BSNT_02301 0 -------------------------------------------------- 0
BL03640___clp 251 AGACCGGCTTGATCGATCCGGTGATCGGCCGCGATGATGAAGTAGCCCGT 300
BSNT_02301 1 GTGATCGAAATTCTAAACCGCCGGAACAAAAACAATCCGGTTCTT-ATTG 49
||||||||.||..||||||||.|.||.||||||||||||| |||| ||.|
BL03640___clp 301 GTGATCGAGATCTTAAACCGCAGAAATAAAAACAATCCGG-TCTTAATCG 349
BSNT_02301 50 GTGAGCCGGGTGTAGGGAAAACTGCCATCGCTGAAGGGCTCGCTTTAAAA 99
||||.|||||.||.||.|||||.|||.||||||||||.||.|||.|.|||
BL03640___clp 350 GTGAACCGGGCGTCGGTAAAACAGCCGTCGCTGAAGGACTTGCTCTCAAA 399
BSNT_02301 100 ATTGCTGAAGGTGATGTTCCAAACAAACTGAAAAACAAAGAGCTATATTT 149
||.||.|||||.|||||||||||.|||.||||||||||||||||.||..|
BL03640___clp 400 ATCGCCGAAGGCGATGTTCCAAATAAATTGAAAAACAAAGAGCTCTACCT 449
BSNT_02301 150 GCTTGATGTTGCATCCCTTGTTGCAAACACAGGGATCAGAGGCCAATTTG 199
|||||||||.||.|||||.||.||||||||.||.||||||||.|||||||
BL03640___clp 450 GCTTGATGTCGCTTCCCTCGTGGCAAACACCGGCATCAGAGGGCAATTTG 499
BSNT_02301 200 AGGAGAGAATGAAACAGCTGATCACTGAGCTGAAGGAACGAAAAAATGTC 249
|.||.|||||||||||||||||.|..||||||||.|||||.|||||.| |
BL03640___clp 500 AAGAAAGAATGAAACAGCTGATGAAAGAGCTGAAAGAACGCAAAAACG-C 548
BSNT_02301 250 ATTC-TGTTCATTGATGAAATTCACCTTCTCGTCGGCGCAGGCTCTGCAG 298
|.|| ||||.|||||.||||||||||||||.|||||.||.||||||||||
BL03640___clp 549 AATCTTGTTTATTGACGAAATTCACCTTCTTGTCGGGGCCGGCTCTGCAG 598
BSNT_02301 299 AAGGATCAATGGACGCCGGCAACATTCTCAAACCGGCCCTAGCCAGAGGC 348
||||.||.|||||.||.|||||||||.|.|||||.||.||.|||||||||
BL03640___clp 599 AAGGCTCCATGGATGCGGGCAACATTTTAAAACCTGCACTTGCCAGAGGC 648
BSNT_02301 349 GAACTGCAAGTCATTGGTGCGACAACACTGAAAGAATATCGTCAAATCGA 398
||.||||||||.||.||.||.||.||..||||.||||||||.|||||.||
BL03640___clp 649 GAGCTGCAAGTTATCGGCGCTACGACGTTGAAGGAATATCGCCAAATTGA 698
BSNT_02301 399 AAAAGATGCCGCGCTGGAAAGACGTTTTCAGCCTGTCATGGTGCAGGAGC 448
|||||||||.|||.|.||..|.||.||||||||..||||||||||.||.|
BL03640___clp 699 AAAAGATGCGGCGTTAGAGCGGCGCTTTCAGCCGATCATGGTGCACGAAC 748
BSNT_02301 449 CTTCAATTGAACAGGCTATCCTC----ATTCTGCAAGGGATTAAAGACAA 494
|..|||||||.|||| ||.| |||.|..|.|||.|.||.||.||
BL03640___clp 749 CGACAATTGAGCAGG----CCGCAGCGATTTTAAACGGGCTCAAGGAAAA 794
BSNT_02301 495 ATACGAGGCATACCATGGCGTAACATTCAGTGATGAAGCAATCAAAGCAT 544
||||||.|||||.||.|..||.||.|.||..||||||||.||||||||.|
BL03640___clp 795 ATACGAAGCATATCACGATGTGACTTACACGGATGAAGCGATCAAAGCCT 844
BSNT_02301 545 GTGTCACTTTATCATCCCGCTACATTCAGGACAGACACCTGCCGGATAAA 594
|.||||.|.|.|||..||||||.|||||||||.|.||.||.||.|||||.
BL03640___clp 845 GCGTCATTCTGTCAAGCCGCTATATTCAGGACCGCCATCTTCCCGATAAG 894
BSNT_02301 595 GCAATTGATTTATTAGATGAAGCAGGTTCAAAAGCCAACCTGTTAATTGA 644
||.||.||..|.||.||||||||.|||||||||||.|||.||..|||.||
BL03640___clp 895 GCGATCGACCTTTTGGATGAAGCCGGTTCAAAAGCGAACTTGAAAATCGA 944
BSNT_02301 645 TGAACTGAATGATGAGGATGCCGCTGAAC--GCTT---AA---CTGC--- 683
.|.|.|.|| ||.||||| |||| || ||||
BL03640___clp 945 -------CACGGTCAG-----CGGTGAACAAGCTTCCCAACGCCTGCAAG 982
BSNT_02301 684 -AATTGAAGCCGAAAAAACAAAAGCCCTGGAAGAAGAAAATTACGAACTT 732
|||.|||||.||||||.|.|||||.||..||||||||||.|||||.|||
BL03640___clp 983 AAATCGAAGCGGAAAAAGCCAAAGCGCTTCAAGAAGAAAACTACGAGCTT 1032
BSNT_02301 733 GCGGCAAAACTCCGTGATGAAGAACTCGCATTGGAGAAAAAACTGAACAG 782
||.|||||||||||.||.||||||...||..||.|.||||||.||.|.||
BL03640___clp 1033 GCAGCAAAACTCCGCGACGAAGAAGAAGCGCTGCATAAAAAAATGGAAAG 1082
BSNT_02301 783 CTCCTCCGCTCAT-----------ACCGCTGTCACTGTGGAAGCTGAGCA 821
| ||| ||.| |..||.||.|||||.||..|
BL03640___clp 1083 C---------CATGAGGAAGAAAAACGG--GCAACAGTTGAAGCGGAAGA 1121
BSNT_02301 822 CATTCAGGAAATTGTTGAACAAAAAACAGGCATCCCTGTCGGCAAACTGC 871
||||||.|..||..|.|||||||||||.|||||.||.||||||||.||.|
BL03640___clp 1122 CATTCAAGCGATCATCGAACAAAAAACCGGCATTCCGGTCGGCAAGCTTC 1171
BSNT_02301 872 AGGCA-GACGAACAAACGAAAATGAAAGAACTCGAAGCAAAACTTCATGA 920
| ||| |||||.||.|.||||||||||||.||.||||||.|.||| |.|
BL03640___clp 1172 A-GCACGACGATCAGAAGAAAATGAAAGAGCTTGAAGCACACCTT--TCA 1218
BSNT_02301 921 A--CGCGTGATTGGACAAGAAGCCGCTGTTCAAAAAGTGGCAAAGGCGGT 968
| ||||||||.||.|||.|||..||.||..|||||||||||||.||.||
BL03640___clp 1219 AGCCGCGTGATCGGTCAAAAAGAAGCGGTGAAAAAAGTGGCAAAAGCCGT 1268
BSNT_02301 969 AAGACGAAGCCGCGCCGGTTTAAAATCCAAAAACAGACCAGTCGGCTCCT 1018
.|||.|||||||||||||..|.|||||.||||||||.||.|||||.||.|
BL03640___clp 1269 CAGAAGAAGCCGCGCCGGCCTGAAATCAAAAAACAGGCCTGTCGGTTCAT 1318
BSNT_02301 1019 TCCTCTTCGTCGGTCCTACCGGCGTAGGGAAAACAGAGCTTTCTAAAACA 1068
||||.||||||||.||.||.||.||.||.||||||||.||||||||||..
BL03640___clp 1319 TCCTGTTCGTCGGCCCGACAGGTGTCGGTAAAACAGAACTTTCTAAAAGG 1368
BSNT_02301 1069 CTGGCAGATGAATTATTCGGCACAAAAGACGCTATTATCCGACTCGATAT 1118
||.||.||.|||.|.||||||||.||.||.||.||.|||||.||||||||
BL03640___clp 1369 CTTGCGGAAGAACTGTTCGGCACGAAGGATGCCATCATCCGCCTCGATAT 1418
BSNT_02301 1119 GAGCGAATACATGGAGAAACACGCCGTATCTAAAATTATCGGTTCACCGC 1168
|||||||||||||||.||||||||||||||.||..|.||||||||.||.|
BL03640___clp 1419 GAGCGAATACATGGAAAAACACGCCGTATCAAAGCTGATCGGTTCGCCTC 1468
BSNT_02301 1169 CTGGATATGTCGGCCATGAGGAAGCTGGACAATTAACTGAGAAAGTGCGC 1218
||||||||||||||||.||.|||||.|||||..|.||.||.|||||.||.
BL03640___clp 1469 CTGGATATGTCGGCCACGAAGAAGCCGGACAGCTTACCGAAAAAGTCCGG 1518
BSNT_02301 1219 CGCAATCCTTACAGCATTGTGTTGCTGGATGAGATTGAAAAAGCACACCC 1268
.|.||.||.||||||||.||.|||||.|||||.||.||||||||.||.||
BL03640___clp 1519 AGGAACCCGTACAGCATCGTTTTGCTCGATGAAATCGAAAAAGCCCATCC 1568
BSNT_02301 1269 AGACGTTCAGCATATGTTCCTGCAAATTATGGAGGATGGCCGTCTGACAG 1318
.||.||.|||||.||||||||||||||.|||||.||.||.||||||||||
BL03640___clp 1569 CGATGTCCAGCACATGTTCCTGCAAATCATGGAAGACGGACGTCTGACAG 1618
BSNT_02301 1319 ACAGCCAAGGCAGAACTGTAAGCTTCAAAGACACAGTGATCATCATGACA 1368
||||||||||..|.||.||.|||||.|||||.||.||.||.||.||||||
BL03640___clp 1619 ACAGCCAAGGGCGGACGGTCAGCTTTAAAGATACCGTCATTATTATGACA 1668
BSNT_02301 1369 AGTAATGCGGGTGCTGGTGAGAA----ACAAACGAAAGTCGGTTTCCAAT 1414
||.|||||.||||....|||.|| ||||.| |||||||| .||.
BL03640___clp 1669 AGCAATGCCGGTGTATCTGAAAAGCGGACAACC----GTCGGTTT-TAAC 1713
BSNT_02301 1415 C-AGATGA-CAGTGTCATCGAAGAACAAACATTGATTGATTCACTGAGCA 1462
| .||.|| || .||.||.|..||||||.||.||||.||||||.|.|||.
BL03640___clp 1714 CGGGAAGAGCA-AGTAATGGGCGAACAATCAATGATCGATTCATTAAGCG 1762
BSNT_02301 1463 TGTTCTTTAAACCTGAGTTCCTCAACCGTTTTGACAGCATTATTGAGTT- 1511
..|.||||||.||.||.|||||.|||.|.|||||||||||.||.||.||
BL03640___clp 1763 GCTACTTTAAGCCGGAATTCCTGAACAGATTTGACAGCATCATCGAATTC 1812
BSNT_02301 1512 ---CCGCTCATTGGAAAAAGAACATCTTGTCAAAATCGTCAGCCTTCTT- 1557
|||||| |||||||||.||||.|||||.|||| |.|||.||||
BL03640___clp 1813 CAGCCGCTC----GAAAAAGAAGATCTGGTCAAGATCG-CCGCCCTCTTG 1857
BSNT_02301 1558 CTTGGAGAACTTGAAGAAACATTGGCTGAACGGGGCATTA------GCTT 1601
||...|||.|||||||||||.|| ||..|.|||..| |||.
BL03640___clp 1858 CTGAAAGAGCTTGAAGAAACGTT-----AAAAGAGCAAAACATGACGCTC 1902
BSNT_02301 1602 GAATGTGACAGATGAAGCGAAAGAAAAAATCGCTGAGCTGGGCTACCACC 1651
||| ||..|||||||.||.|||||||||||||||||..|.||.|||||.|
BL03640___clp 1903 GAA-GTTTCAGATGAGGCAAAAGAAAAAATCGCTGAAATCGGATACCATC 1951
BSNT_02301 1652 CTTCATTCGGTGCACGTCCGCTTAGAAGAACCATCCAAGAATGGGTTGAG 1701
|..|.||.||.||.||.||..|.|||||||||||.|||..|..|||.||.
BL03640___clp 1952 CGGCCTTTGGCGCCCGCCCATTAAGAAGAACCATTCAAACAGCGGTCGAA 2001
BSNT_02301 1702 GATGAAATGACCGATCTGCTGCTTGATAATGGCGAGATCACAAGTTTTCA 1751
|||.||||||||||||||||||||||..|.|...|.||||.|.|||||..
BL03640___clp 2002 GATCAAATGACCGATCTGCTGCTTGAAGAAGAACACATCAAAGGTTTTGC 2051
BSNT_02301 1752 CGTGATTTTAGAAGATGATAAAATCAAAGTG----CAAGCGAAATAA 1794
.||.||..|.|||.|.|||.|||||...||| ||| |.|.||||
BL03640___clp 2052 GGTTATCGTTGAAAACGATGAAATCCGGGTGAAAACAA-CCAGATAA 2097
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