Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05118 and BL03617

See Amino acid alignment / Visit BSNT_05118 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:14
# Commandline: needle
#    -asequence dna-align/BSNT_05118___yvbF.1.5803.seq
#    -bsequence dna-align/BL03617___yvbF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05118___yvbF-BL03617___yvbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05118___yvbF-BL03617___yvbF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05118___yvbF
# 2: BL03617___yvbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 581
# Identity:     398/581 (68.5%)
# Similarity:   398/581 (68.5%)
# Gaps:          64/581 (11.0%)
# Score: 1351.5
# 
#
#=======================================

BSNT_05118___      1 ---GTGAAAAAAACCGCTCTCGACATCATTGAACATGCTGAAGAGCATCT     47
                        |.|.||||   ||||.|..|..|.||||||||.||.|||||.|||.|
BL03617___yvb      1 TTGGAGGAAAA---CGCTTTAAAAGTGATTGAACAAGCGGAAGAACATTT     47

BSNT_05118___     48 CATTGAGAAGATTGCCGAAAATATGCATACGTTTGGAATGCCTTCAACTG     97
                     |||.||.||.||.||||||||||||.||||.|..||..|..|.|||||||
BL03617___yvb     48 CATAGAAAAAATCGCCGAAAATATGAATACATACGGTCTATCATCAACTG     97

BSNT_05118___     98 TCGGACGTGTGCTCGGAATTATTTATATGAATCGAAAACCGATGACCTTA    147
                     ||||.||.||||||||.||.||.||||||||..||||.||||||||||||
BL03617___yvb     98 TCGGCCGCGTGCTCGGGATCATCTATATGAACAGAAAGCCGATGACCTTA    147

BSNT_05118___    148 AGCGAGCTCTCTGAGGCAACGGGCATGAGCAAAACACGGATGAGCCAGGT    197
                     |..||.||.||.||.|.||||||||||||||||||..|.|||||||||||
BL03617___yvb    148 AATGAACTGTCAGAAGAAACGGGCATGAGCAAAACGAGAATGAGCCAGGT    197

BSNT_05118___    198 TGTCCGGGAAATGATCGATGCCAATATCGCCGAAAAGGTGTTTGAAAAAG    247
                     .|||||.||||||||||||...|||||.||.|||||.||.||||||||||
BL03617___yvb    198 CGTCCGCGAAATGATCGATTTAAATATAGCTGAAAAAGTTTTTGAAAAAG    247

BSNT_05118___    248 GCGTACGAAAAGACCTTTATGACGTCGAGCAGGATTATTATCAAACCTTC    297
                     ||||.||.|||||.||.||.||.|||||.||.||.|||||||||||.||.
BL03617___yvb    248 GCGTCCGCAAAGATCTGTACGATGTCGAACAAGACTATTATCAAACGTTT    297

BSNT_05118___    298 ATTTCTTTATTTGCGGCGAATTGGA-CAAAGGTCGTGAGCAAAAACAA-A    345
                     |||||.||.|||.||||.||.|||| |||| ||||   .||||||.|| |
BL03617___yvb    298 ATTTCATTGTTTACGGCCAACTGGAGCAAA-GTCG---CCAAAAAGAACA    343

BSNT_05118___    346 GTGCTGTAT-----AAAAAATTAAACCGGGAACTGAGTGATCTTTTACA-    389
                     | |.|| ||     |||||||.|      |||..|||    ||.||..| 
BL03617___yvb    344 G-GATG-ATTGGGAAAAAAATCA------GAAAAGAG----CTGTTGGAG    381

BSNT_05118___    390 ------AAGG--GACGGGCTTACCCCGGAAGCGGAAGAGAAAGTCAATCA    431
                           .|||  ||.||.|||||.||.|||.|.||||..|||.||||..|
BL03617___yvb    382 GCGCTCGAGGAAGAAGGCCTTACGCCTGAAACCGAAGCTAAAATCAACGA    431

BSNT_05118___    432 GCTGCTGAATGAATTAAAAGAATGGCTTCATTACTATGATTGGC-TGAGC    480
                     |||||||..||||..||||.|||||.|..||||||..||.|||| ||| |
BL03617___yvb    432 GCTGCTGGCTGAAACAAAACAATGGATCGATTACTGCGAGTGGCTTGA-C    480

BSNT_05118___    481 AGGTTGATTGAATTTTTTGAGAGTGAGGAAGTCTTTCGGTACGTGCCAAA    530
                     |...||||.|..|||||.||.||.||.||..||||...|.|.||||||||
BL03617___yvb    481 AATCTGATCGCGTTTTTGGAAAGCGAAGAGATCTTCAAGCATGTGCCAAA    530

BSNT_05118___    531 A---ACAAAAGAAAGCAGCTCTCTAAAATAA    558
                     |   .||.||                     
BL03617___yvb    531 ACCTTCATAA---------------------    540


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