Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05194 and BL03611
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:19
# Commandline: needle
# -asequence dna-align/BSNT_05194___slr.1.5803.seq
# -bsequence dna-align/BL03611___slr.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05194___slr-BL03611___slr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05194___slr-BL03611___slr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05194___slr
# 2: BL03611___slr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity: 324/498 (65.1%)
# Similarity: 324/498 (65.1%)
# Gaps: 78/498 (15.7%)
# Score: 1028.5
#
#
#=======================================
BSNT_05194___ 1 ATGATTGGAAGAATTATCCGTTTGTACCGTAAAAGAAAAGGCTATTCTAT 50
|||||.||||||.|.|||||..|||||.|.||.|||||||||||.||.||
BL03611___slr 1 ATGATCGGAAGAGTCATCCGAATGTACAGAAAGAGAAAAGGCTACTCCAT 50
BSNT_05194___ 51 TAATCAGCTGGCTG-TTGAGTCAGGCGTATCCAAATCCTATTTAAGCAAA 99
|||.|||||.|||| |..|| ||||||||||.|||||.||||||||||||
BL03611___slr 51 TAACCAGCTTGCTGATATAG-CAGGCGTATCAAAATCATATTTAAGCAAA 99
BSNT_05194___ 100 ATTGAAAGAGGCGTTCACACGAATCCGTCCGTTCAATT-TTTAAAAAAAG 148
||||||.|.||||||||||..||||||||.||..|||| .|.|||||||
BL03611___slr 100 ATTGAACGCGGCGTTCACAGAAATCCGTCAGTCGAATTCCTGAAAAAAA- 148
BSNT_05194___ 149 TTTCTGCC--ACACTGGAAGTTGAATTAACAGAATTATTTGACGCAGAAA 196
|||.|| .|.|||.||||.|||||||..|||||.|||||..|.|||.
BL03611___slr 149 --TCTCCCGGGCGCTGAAAGTCGAATTAAAGGAATTGTTTGATACCGAAG 196
BSNT_05194___ 197 CAATGATGTATGAAAAAATCAGCGGCGG--------TGAAGAAGAATGGC 238
..||..|.||| ||.||| .|||||.||.|||.
BL03611___slr 197 TGATCCTTTAT-----------CGCCGGACTGAGCAGGAAGATGAGTGGA 235
BSNT_05194___ 239 GCGTACATTTAGTGCAAGCCGTACAAGCCGGGATGGAAAAGGAAGAATTG 288
|....|||.|.||.||.|||||.||.|||||||||.|..||||||||.||
BL03611___slr 236 GAACCCATCTTGTACAGGCCGTGCAGGCCGGGATGAACCAGGAAGAACTG 285
BSNT_05194___ 289 -TTCACTTTTACGAACA--GGCT---------AAAGAAAGAACAGCCTGA 326
||||.|| |..||| |.|| |||||||||||.|
BL03611___slr 286 TTTCAATT---CACACATCGCCTCAAGCAGAAAAAGAAAGAACGG----- 327
BSNT_05194___ 327 AACTGC-CTCTTACCGCAACCGTAAATTGAC---GGAATCCAATATAGAA 372
|| || |||.||.|||.|..|..|||| || |.|||||.||.
BL03611___slr 328 ----GCGCT-TTATCGAAACAGAGAGCTGACCCGGG---CGAATATCGAC 369
BSNT_05194___ 373 GAATGGAAAGCGCTGATGGCGGAAGCAAGAGAAATCGGCTTGACTGTCTA 422
|||||||.|||.||.|||..|||.||.|.||||||.||..||||.|||.|
BL03611___slr 370 GAATGGAGAGCCCTTATGCTGGAGGCCAAAGAAATGGGACTGACCGTCAA 419
BSNT_05194___ 423 TGAAGTCAAATCCTTTTT-----------AAAAACAATGGGAAGATGA 459
.|||||..||.|.||||| ||||.||.| ||
BL03611___slr 420 AGAAGTAGAAGCGTTTTTGATGAGGACAAAAAATCATT---AA----- 459
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