Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03605 and BL03609

See Amino acid alignment / Visit BSNT_03605 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_03605___yqiG.1.5803.seq
#    -bsequence dna-align/BL03609___yqiG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03605___yqiG-BL03609___yqiG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03605___yqiG-BL03609___yqiG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03605___yqiG
# 2: BL03609___yqiG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1350
# Identity:     682/1350 (50.5%)
# Similarity:   682/1350 (50.5%)
# Gaps:         456/1350 (33.8%)
# Score: 1492.5
# 
#
#=======================================

BSNT_03605___      1 GTGCGAATCCAAACGAAAGAAGATGATCAA-ATGAATCCTAAGTATAAGC     49
                                 |.||||.||      ||| |.||.||.|.|.|      
BL03609___yqi      1 ------------ATGAAAAAA------CAATACGAGTCTTTATT------     26

BSNT_03605___     50 CACTTTTTGAACCATTTACGTTTAAAAGCGGCGTTACAATCG-ACAACCG     98
                     |||       .||.|||||.|||||||.||| ..|.||||.| |.||..|
BL03609___yqi     27 CAC-------CCCGTTTACTTTTAAAAACGG-AATCCAATTGAAAAATAG     68

BSNT_03605___     99 GATC-----GCAGTAGCACCGATG----------ACTCATT------ACG    127
                     ||||     ||     |.||.|||          .||||||      |.|
BL03609___yqi     69 GATCATCATGC-----CGCCAATGGGGCATTCATCCTCATTGCCGGGAGG    113

BSNT_03605___    128 CTTCTAATGAAGACGGTACAATATCTGAAGCGGAGCTCGACTACATCAT-    176
                     .|||                ||.|||||.|..||.||.|.||  ||.|| 
BL03609___yqi    114 ATTC----------------ATTTCTGACGACGAACTGGTCT--ATTATG    145

BSNT_03605___    177 -CCCCCGTTCAAAAGAGATGGGAATGGTGATTACAGCCTGCG-CAAATGT    224
                      |.|.||..|.|.|||..|.||.|||||.||.||| .||||| |||..| 
BL03609___yqi    146 CCGCGCGGGCGACAGAAGTCGGGATGGTCATCACA-TCTGCGACAACCG-    193

BSNT_03605___    225 TACA--CCGGA--CGGA----AAAGCATTCCCCGGGCAGCCG-GCCATCC    265
                     ||||  |||||  ||||    .|.||| |||||||  |||.| |  |.|.
BL03609___yqi    194 TACAGCCCGGAACCGGATTTCCAGGCA-TCCCCGG--AGCTGAG--AACG    238

BSNT_03605___    266 ATGA-CGATTCC-------AAC----ATTCCAG---GTTTAAAAAA----    296
                     |||| |.|.|||       |||    .||.|||   .||||||.||    
BL03609___yqi    239 ATGATCAAATCCCTGGACTAACCCGGCTTGCAGCCACTTTAAAGAAACAC    288

BSNT_03605___    297 -GTTAGCACAAGCCATTCAGGCACAAGGCGCTAAAGCTGTTGTACAAATT    345
                      |  ||||.||||.||             .||..||||.|        |.
BL03609___yqi    289 GG--AGCAAAAGCAAT-------------CCTCCAGCTCT--------TC    315

BSNT_03605___    346 CATCACGG------CGGTATTGAG-TGCCCGTCTGAGC--------TCGT    380
                     ||||..||      .|||||.||| .|.|.|||.|.||        |||.
BL03609___yqi    316 CATCCTGGAGCCAAAGGTATAGAGCGGACGGTCAGCGCCAGCGCCGTCGC    365

BSNT_03605___    381 TCC---TCAACAGGATGTTGTGGGGCCAAGTGACG-TGTTTGATAACGGC    426
                     |||   |||||.|.|||....||.|||.|| |.|| |||.|||       
BL03609___yqi    366 TCCGAATCAACCGAATGCACCGGTGCCGAG-GGCGCTGTCTGA-------    407

BSNT_03605___    427 AAACAAATTGCTCGCGCATTAAAAGAAGAAGAAGTGGAAAACATTGTGAA    476
                                    ||           |||||.|..||.||.||.|..|
BL03609___yqi    408 ---------------GC-----------AAGAAATTCAAGACCTTATCCA    431

BSNT_03605___    477 GGCTTTTGG--AGA-AGCGACAAGACGCGCCATTGAAGCCGGCTTTGACG    523
                     ..||||.||  ||| .|||..||||   ||.||.||||||||.|||||||
BL03609___yqi    432 TTCTTTCGGCCAGACGGCGCGAAGA---GCGATAGAAGCCGGGTTTGACG    478

BSNT_03605___    524 GTGTCGAAATTCACGGTGCAAACGGCTACTTAATTCAGCAGTTTTATTCT    573
                     |.||||||||||||||.||||||||.|...|.||.||.|||||.|..|||
BL03609___yqi    479 GAGTCGAAATTCACGGCGCAAACGGGTTTCTCATCCATCAGTTCTTCTCT    528

BSNT_03605___    574 CCGAAAACCAATCAGCGCACGGATCGCTGGGGAGGAAGCGAT-GAAAAAC    622
                     ||..|...|||.|.|||||..||..|||||||.||.| |..| ||.||||
BL03609___yqi    529 CCTTATTACAACCGGCGCAATGACGGCTGGGGCGGCA-CTTTAGAGAAAC    577

BSNT_03605___    623 -GATTAGCCTTCCCGCTCGCT----ATTGTCGATGAAGTGAAA-------    660
                      |||.||..|||     ||||    |||.|.||.|||.|.|.|       
BL03609___yqi    578 GGATGAGATTTC-----CGCTTCAGATTATAGAAGAAATCAGACGCGTAG    622

BSNT_03605___    661 ---AAAGCCGCTTCAGAACATGCGAAG-GGTGCGTTCTTAGTCGGCTAC-    705
                        |.|||.||       |||   ||| .||.|.||.|.| |||||||| 
BL03609___yqi    623 CGGATAGCTGC-------CAT---AAGCCGTCCTTTATCA-TCGGCTACA    661

BSNT_03605___    706 CGTCTGTCTCCGGAAGAACCTGAGACACCGGGATTGACAATGACTGAAAC    755
                     .|| |.||.||.|||||.||.||.|||||.|||.|.||||||..||||||
BL03609___yqi    662 AGT-TTTCGCCCGAAGAGCCGGAAACACCTGGAATCACAATGGATGAAAC    710

BSNT_03605___    756 -TTATACGCTT--GTTGATGCTTTAGGGGATAAAGAATTGGATTATCTTC    802
                      ||.|   |||  ||..|||...|..||||..|||.|||||||||.||.|
BL03609___yqi    711 GTTGT---CTTTCGTCAATGTACTGCGGGAGCAAGGATTGGATTACCTGC    757

BSNT_03605___    803 ATATCTCACTGATGGA---------CGTGAACTCAAAAGCGCGCCGCGGT    843
                     |..|.||||||.|.||         |.||         .|||||.|.|||
BL03609___yqi    758 ACGTATCACTGGTTGATTTCCGGTCCTTG---------CCGCGCAGGGGT    798

BSNT_03605___    844 GCAGATCCGA-CTCGCACACGCATGG-ACTTATTGAATGAA--CGTGTCG    889
                     ||||| |.|| |.|||.||.|.|||| |||.| |.||.|||  |||    
BL03609___yqi    799 GCAGA-CAGATCCCGCGCAAGGATGGAACTGA-TCAAAGAAGCCGT----    842

BSNT_03605___    890 GAAACAAAG------TGCCGCTGATCGCCGTCGG----TTCCATCCATTC    929
                         |.|||      |.||.|||||||..|.|||    .|.||  ||..|
BL03609___yqi    843 ----CCAAGACCGTCTCCCACTGATCGGAGCCGGGCAAGTACA--CACAC    886

BSNT_03605___    930 CGCTGATGACGCGCTT------------------GCCG---TCATCGAAA    958
                     ||  ||.|||||.|||                  ||||   ||||||.||
BL03609___yqi    887 CG--GAAGACGCCCTTCAAGCGCTGGAAACAGGAGCCGATCTCATCGGAA    934

BSNT_03605___    959 ACGGTATTCCGCTAGTCGCTATGGGACGCGAAATTCTAGTTGACCCTGAC   1008
                     .|||             ||   |||        .|||       ||||| 
BL03609___yqi    935 TCGG-------------GC---GGG--------GTCT-------CCTGA-    952

BSNT_03605___   1009 TGGA--CGGTAAAAG----TAAAAGAAG-----GCCGTGAAAAG------   1041
                     ||||  |||    ||    ||.||.|||     |||| ||||||      
BL03609___yqi    953 TGGATCCGG----AGTGGCTACAAAAAGTTCGAGCCG-GAAAAGAGGACG    997

BSNT_03605___   1042 -----CAAA--------TCGAAACAGTGATCA----AAG---GCA----C   1067
                          ||||        ||.|.||| ||||||    |||   |||    |
BL03609___yqi    998 ATATTCAAACAACCCTGTCAAGACA-TGATCAGCGGAAGCTCGCAATTCC   1046

BSNT_03605___   1068 AGAT----------AAAGAAAA-------ATA-TCATTTGCCTGAACCGC   1099
                     ||||          ||||.|.|       ||| |.||||           
BL03609___yqi   1047 AGATGCCTTTTGGGAAAGTATACCGATGTATATTGATTT-----------   1085

BSNT_03605___   1100 TATGGCAAGCAATTGTGAACACGCCAGGCTGGGTGCCTTATAAAGATTAA   1149
                           .|||.||||.                                  
BL03609___yqi   1086 ------CAGCGATTGA----------------------------------   1095


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