Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03605 and BL03609
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_03605___yqiG.1.5803.seq
# -bsequence dna-align/BL03609___yqiG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03605___yqiG-BL03609___yqiG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03605___yqiG-BL03609___yqiG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03605___yqiG
# 2: BL03609___yqiG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1350
# Identity: 682/1350 (50.5%)
# Similarity: 682/1350 (50.5%)
# Gaps: 456/1350 (33.8%)
# Score: 1492.5
#
#
#=======================================
BSNT_03605___ 1 GTGCGAATCCAAACGAAAGAAGATGATCAA-ATGAATCCTAAGTATAAGC 49
|.||||.|| ||| |.||.||.|.|.|
BL03609___yqi 1 ------------ATGAAAAAA------CAATACGAGTCTTTATT------ 26
BSNT_03605___ 50 CACTTTTTGAACCATTTACGTTTAAAAGCGGCGTTACAATCG-ACAACCG 98
||| .||.|||||.|||||||.||| ..|.||||.| |.||..|
BL03609___yqi 27 CAC-------CCCGTTTACTTTTAAAAACGG-AATCCAATTGAAAAATAG 68
BSNT_03605___ 99 GATC-----GCAGTAGCACCGATG----------ACTCATT------ACG 127
|||| || |.||.||| .|||||| |.|
BL03609___yqi 69 GATCATCATGC-----CGCCAATGGGGCATTCATCCTCATTGCCGGGAGG 113
BSNT_03605___ 128 CTTCTAATGAAGACGGTACAATATCTGAAGCGGAGCTCGACTACATCAT- 176
.||| ||.|||||.|..||.||.|.|| ||.||
BL03609___yqi 114 ATTC----------------ATTTCTGACGACGAACTGGTCT--ATTATG 145
BSNT_03605___ 177 -CCCCCGTTCAAAAGAGATGGGAATGGTGATTACAGCCTGCG-CAAATGT 224
|.|.||..|.|.|||..|.||.|||||.||.||| .||||| |||..|
BL03609___yqi 146 CCGCGCGGGCGACAGAAGTCGGGATGGTCATCACA-TCTGCGACAACCG- 193
BSNT_03605___ 225 TACA--CCGGA--CGGA----AAAGCATTCCCCGGGCAGCCG-GCCATCC 265
|||| ||||| |||| .|.||| ||||||| |||.| | |.|.
BL03609___yqi 194 TACAGCCCGGAACCGGATTTCCAGGCA-TCCCCGG--AGCTGAG--AACG 238
BSNT_03605___ 266 ATGA-CGATTCC-------AAC----ATTCCAG---GTTTAAAAAA---- 296
|||| |.|.||| ||| .||.||| .||||||.||
BL03609___yqi 239 ATGATCAAATCCCTGGACTAACCCGGCTTGCAGCCACTTTAAAGAAACAC 288
BSNT_03605___ 297 -GTTAGCACAAGCCATTCAGGCACAAGGCGCTAAAGCTGTTGTACAAATT 345
| ||||.||||.|| .||..||||.| |.
BL03609___yqi 289 GG--AGCAAAAGCAAT-------------CCTCCAGCTCT--------TC 315
BSNT_03605___ 346 CATCACGG------CGGTATTGAG-TGCCCGTCTGAGC--------TCGT 380
||||..|| .|||||.||| .|.|.|||.|.|| |||.
BL03609___yqi 316 CATCCTGGAGCCAAAGGTATAGAGCGGACGGTCAGCGCCAGCGCCGTCGC 365
BSNT_03605___ 381 TCC---TCAACAGGATGTTGTGGGGCCAAGTGACG-TGTTTGATAACGGC 426
||| |||||.|.|||....||.|||.|| |.|| |||.|||
BL03609___yqi 366 TCCGAATCAACCGAATGCACCGGTGCCGAG-GGCGCTGTCTGA------- 407
BSNT_03605___ 427 AAACAAATTGCTCGCGCATTAAAAGAAGAAGAAGTGGAAAACATTGTGAA 476
|| |||||.|..||.||.||.|..|
BL03609___yqi 408 ---------------GC-----------AAGAAATTCAAGACCTTATCCA 431
BSNT_03605___ 477 GGCTTTTGG--AGA-AGCGACAAGACGCGCCATTGAAGCCGGCTTTGACG 523
..||||.|| ||| .|||..|||| ||.||.||||||||.|||||||
BL03609___yqi 432 TTCTTTCGGCCAGACGGCGCGAAGA---GCGATAGAAGCCGGGTTTGACG 478
BSNT_03605___ 524 GTGTCGAAATTCACGGTGCAAACGGCTACTTAATTCAGCAGTTTTATTCT 573
|.||||||||||||||.||||||||.|...|.||.||.|||||.|..|||
BL03609___yqi 479 GAGTCGAAATTCACGGCGCAAACGGGTTTCTCATCCATCAGTTCTTCTCT 528
BSNT_03605___ 574 CCGAAAACCAATCAGCGCACGGATCGCTGGGGAGGAAGCGAT-GAAAAAC 622
||..|...|||.|.|||||..||..|||||||.||.| |..| ||.||||
BL03609___yqi 529 CCTTATTACAACCGGCGCAATGACGGCTGGGGCGGCA-CTTTAGAGAAAC 577
BSNT_03605___ 623 -GATTAGCCTTCCCGCTCGCT----ATTGTCGATGAAGTGAAA------- 660
|||.||..||| |||| |||.|.||.|||.|.|.|
BL03609___yqi 578 GGATGAGATTTC-----CGCTTCAGATTATAGAAGAAATCAGACGCGTAG 622
BSNT_03605___ 661 ---AAAGCCGCTTCAGAACATGCGAAG-GGTGCGTTCTTAGTCGGCTAC- 705
|.|||.|| ||| ||| .||.|.||.|.| ||||||||
BL03609___yqi 623 CGGATAGCTGC-------CAT---AAGCCGTCCTTTATCA-TCGGCTACA 661
BSNT_03605___ 706 CGTCTGTCTCCGGAAGAACCTGAGACACCGGGATTGACAATGACTGAAAC 755
.|| |.||.||.|||||.||.||.|||||.|||.|.||||||..||||||
BL03609___yqi 662 AGT-TTTCGCCCGAAGAGCCGGAAACACCTGGAATCACAATGGATGAAAC 710
BSNT_03605___ 756 -TTATACGCTT--GTTGATGCTTTAGGGGATAAAGAATTGGATTATCTTC 802
||.| ||| ||..|||...|..||||..|||.|||||||||.||.|
BL03609___yqi 711 GTTGT---CTTTCGTCAATGTACTGCGGGAGCAAGGATTGGATTACCTGC 757
BSNT_03605___ 803 ATATCTCACTGATGGA---------CGTGAACTCAAAAGCGCGCCGCGGT 843
|..|.||||||.|.|| |.|| .|||||.|.|||
BL03609___yqi 758 ACGTATCACTGGTTGATTTCCGGTCCTTG---------CCGCGCAGGGGT 798
BSNT_03605___ 844 GCAGATCCGA-CTCGCACACGCATGG-ACTTATTGAATGAA--CGTGTCG 889
||||| |.|| |.|||.||.|.|||| |||.| |.||.||| |||
BL03609___yqi 799 GCAGA-CAGATCCCGCGCAAGGATGGAACTGA-TCAAAGAAGCCGT---- 842
BSNT_03605___ 890 GAAACAAAG------TGCCGCTGATCGCCGTCGG----TTCCATCCATTC 929
|.||| |.||.|||||||..|.||| .|.|| ||..|
BL03609___yqi 843 ----CCAAGACCGTCTCCCACTGATCGGAGCCGGGCAAGTACA--CACAC 886
BSNT_03605___ 930 CGCTGATGACGCGCTT------------------GCCG---TCATCGAAA 958
|| ||.|||||.||| |||| ||||||.||
BL03609___yqi 887 CG--GAAGACGCCCTTCAAGCGCTGGAAACAGGAGCCGATCTCATCGGAA 934
BSNT_03605___ 959 ACGGTATTCCGCTAGTCGCTATGGGACGCGAAATTCTAGTTGACCCTGAC 1008
.||| || ||| .||| |||||
BL03609___yqi 935 TCGG-------------GC---GGG--------GTCT-------CCTGA- 952
BSNT_03605___ 1009 TGGA--CGGTAAAAG----TAAAAGAAG-----GCCGTGAAAAG------ 1041
|||| ||| || ||.||.||| |||| ||||||
BL03609___yqi 953 TGGATCCGG----AGTGGCTACAAAAAGTTCGAGCCG-GAAAAGAGGACG 997
BSNT_03605___ 1042 -----CAAA--------TCGAAACAGTGATCA----AAG---GCA----C 1067
|||| ||.|.||| |||||| ||| ||| |
BL03609___yqi 998 ATATTCAAACAACCCTGTCAAGACA-TGATCAGCGGAAGCTCGCAATTCC 1046
BSNT_03605___ 1068 AGAT----------AAAGAAAA-------ATA-TCATTTGCCTGAACCGC 1099
|||| ||||.|.| ||| |.||||
BL03609___yqi 1047 AGATGCCTTTTGGGAAAGTATACCGATGTATATTGATTT----------- 1085
BSNT_03605___ 1100 TATGGCAAGCAATTGTGAACACGCCAGGCTGGGTGCCTTATAAAGATTAA 1149
.|||.||||.
BL03609___yqi 1086 ------CAGCGATTGA---------------------------------- 1095
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