Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05315 and BL03598
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_05315___yvpB.1.5803.seq
# -bsequence dna-align/BL03598___yvpB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05315___yvpB-BL03598___yvpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05315___yvpB-BL03598___yvpB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05315___yvpB
# 2: BL03598___yvpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity: 499/826 (60.4%)
# Similarity: 499/826 (60.4%)
# Gaps: 164/826 (19.9%)
# Score: 1469.0
#
#
#=======================================
BSNT_05315___ 1 ATGAAA----ACACTGCGAACTCTATGTGTCCTGATGATTCTTTCAGGCG 46
|||||| .|| .||||| ||.|||
BL03598___yvp 1 ATGAAATTTTTCA----AAACTC---------------TTTTTT------ 25
BSNT_05315___ 47 TTATTTTTTTCGGA---------------------CTTAAAATAGATGCA 75
||||||||||||.| ||||.|.|...|.|.
BL03598___yvp 26 TTATTTTTTTCGTAGCAGTTCTTATGACCGCCGTTCTTATACTGTTTTCT 75
BSNT_05315___ 76 AAAGATATAGATATTCCTTTT----------TTG---AACAGCCTTAAAA 112
|||||| ..|.||..||..|| ||| |.|||||.|||||
BL03598___yvp 76 AAAGAT-GCGTTAAGCCCGTTAGCCGAAATGTTGCACAGCAGCCATAAAA 124
BSNT_05315___ 113 AAG-TGGTTTCTGATAGCGATACAGACTCAGCTGCGAATAGCAAAAAGGA 161
..| || ||||.| .|||||||| |.||||||
BL03598___yvp 125 CTGCTG----CTGACA---------------ATGCGAATA--ATAAAGGA 153
BSNT_05315___ 162 GCTGAAGGGAAGCG-CAAAACCGCTGGATGTCATC--CTTTACAATCAAA 208
| |||| | |.|||||.||.|| || ||...|||.||||
BL03598___yvp 154 G---------AGCGTC--AGCCGCTTGACGT--TCCGCTGATCAACCAAA 190
BSNT_05315___ 209 TGGACGCACCCCGGCTCTATAACGGCTGTGAAGTAACAAGCCTTGCGATG 258
|||||.|.||...|||.|||||||||||||||||..|.|||||.||||||
BL03598___yvp 191 TGGACCCGCCGAAGCTTTATAACGGCTGTGAAGTCGCCAGCCTGGCGATG 240
BSNT_05315___ 259 GTGCTGAATTAC-GCGG-GATACGACGTGACAAAAAACACT---CTGGCA 303
.|..|.||.||| |||| .||| |||.||.|||| ||| ||.||.
BL03598___yvp 241 ATCTTAAACTACAGCGGATATA----GTGTCACAAAA-ACTGAACTTGCC 285
BSNT_05315___ 304 AATCAGATTGCCACAGTGCCTTTGACATACAGCAGCGGATTAAAGGGTGA 353
|||.||.|....|.|||||||.||..|||....|.|||.||||||||..|
BL03598___yvp 286 AATGAGGTGAAAAGAGTGCCTCTGCAATATGAAAACGGCTTAAAGGGAAA 335
BSNT_05315___ 354 TCCGAATGACGGATTTGTCGGGGATATGGCGAATGGCCCTGGTCTCGGTG 403
|||.||.|||||.||||||||.|||||||..||.||.||.||.||..|||
BL03598___yvp 336 TCCTAACGACGGCTTTGTCGGCGATATGGAAAACGGACCCGGACTGAGTG 385
BSNT_05315___ 404 TCTACCATCGACCGATCTATCAGCTGGCGAAAACCTATGCGGGAGACAAA 453
||||||||.|.|||||.||..|..||||..|..|.||.||.||..|.|||
BL03598___yvp 386 TCTACCATGGCCCGATTTACGATTTGGCCCATTCATACGCAGGTAATAAA 435
BSNT_05315___ 454 G-TGTCTGATCTGA------------CTGGAAAAAGTATTTCCGCTGTTT 490
| .||| ||||||| |.||||||| |||
BL03598___yvp 436 GCGGTC-GATCTGACGGGAAGTGAGCCGGGAAAAA------------TTT 472
BSNT_05315___ 491 ATCAGCAGCTTGAA-AAAGGCAATCCAGTTTGGGTTATTACGACAGCCAA 539
||.|.|||| |||| .|.||||..||.||||||||.||.||.||.|...|
BL03598___yvp 473 ATGAACAGC-TGAATCAGGGCAGACCGGTTTGGGTCATCACCACTGTACA 521
BSNT_05315___ 540 CTTTACGCCAGTTGACAACATGCAGACATGGAAAAC-------GCCAAAC 582
.||.||.|||||..||.|.|||.|.||||||||.|| |.||||
BL03598___yvp 522 TTTCACCCCAGTCAACGATATGGAAACATGGAATACACCGTCAGGCAAA- 570
BSNT_05315___ 583 GGAACGATAGAAATTACGTACAGCGAACACAGCGTCGCCGTTACGGGATA 632
.|.||..|.||||||||||..|||||.||.|||||.||.||.||
BL03598___yvp 571 ------GTCGATGTGACGTACAGCGTTCACAGTGTTGCCGTGACAGGCTA 614
BSNT_05315___ 633 TGATGATAAATATGTGTATCTCAATGATCCGTATGGCTATAAAAACAGAA 682
||||||..|.||.||.|||.|.|||||||||||.||.|||||||||||||
BL03598___yvp 615 TGATGAGGATTACGTTTATGTGAATGATCCGTACGGATATAAAAACAGAA 664
BSNT_05315___ 683 AAACCGATAGAACAAGCTTTGAAAAAGCGTGGAAACAAATGGGCAGCCAG 732
||||.||.|||..||..|||||||||.|.||||||||.||||||||.|||
BL03598___yvp 665 AAACAGACAGAGAAAATTTTGAAAAATCATGGAAACAGATGGGCAGTCAG 714
BSNT_05315___ 733 GCCGTGGTTAT-----TCAAAAGTAA 753
||..|.||.|| .|.||
BL03598___yvp 715 GCGATCGTGATCGCCGCCTAA----- 735
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